ID:

dsi_6778

 Coordinate:

3r:10735849-10735998 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.3 -24.1 -23.9

Flybase annnotation

CDS [3r_10735999_10737857_+]; exon [3r_10735999_10737857_+]; intron [3r_10735555_10735998_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAATTTCAAGTGTATGCTAATCACATGGTAAACAAATTCTGGAATTTTGATTGCAAAAGAAATGGTGATAATTTCAGAACCTGAACTTCAATATGAACAGGTTCCAGCTTTAAATATGCTATTGTATTACGATGGCTTTATGTACACAACCGTATTCCATGAAATTCACTTACCCAACTGTTTTGCTTACATATTGCAGAAATCGAGAGCCCGCCTAACCGACAGCAATAGAGGCAGCAACAAGAGGCA
*****************************************************************((((..(((((((((((((...((((...))))))))))).............((((((((...)))))))).....((((......))))....))))))))))...........................***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
............................................................................................................................................................................................TACATATTTCAGAAAACGAGAGA....................................... 23 3 1 2.00 2 2 0 0 0 0 0 0 0
...............................AACAAATTCTGGAATTTTGATT..................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................GACAGCAATAGAGGCA............. 16 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................TACCCAACTGTTTTGCTTACATATTG..................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0
.................................................................GTGATAATTTCAGAACCTGAACTTC................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................AATCGAGAGCCCGCCTAACCGACA......................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................TTCAGAACCTGAACTTCAATATGAACA...................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0
.........................................................................................................................ATTGTACTACGATGGCT................................................................................................................ 17 1 2 0.50 1 0 0 1 0 0 0 0 0
....................................................................................................................................................AACCCTATTCCATGA....................................................................................... 15 1 4 0.50 2 0 0 0 2 0 0 0 0
.................................................................................................................................................CATAACCCTATTCCATGA....................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0
.................................................TATTGCAAAAGATATGTTGATA................................................................................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0
..................................................................................................................................................ATAACCCTATTCCATGA....................................................................................... 17 2 20 0.15 3 0 0 0 3 0 0 0 0
..................................................................................................................................................................................CTGTTTTGCTTACCTAGTC..................................................... 19 3 20 0.10 2 0 0 0 2 0 0 0 0
.............................................................................................................TTTAAATATGCTATT.............................................................................................................................. 15 0 10 0.10 1 0 0 0 0 0 0 0 1
...........................................................................................................................AGTATTACGATGGGTTT.............................................................................................................. 17 2 16 0.06 1 0 0 0 0 0 0 0 1
............................................................................................................................................................TCCATGAAATTAACTT.............................................................................. 16 1 16 0.06 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGTTAAAGTTCACATACGATTAGTGTACCATTTGTTTAAGACCTTAAAACTAACGTTTTCTTTACCACTATTAAAGTCTTGGACTTGAAGTTATACTTGTCCAAGGTCGAAATTTATACGATAACATAATGCTACCGAAATACATGTGTTGGCATAAGGTACTTTAAGTGAATGGGTTGACAAAACGAATGTATAACGTCTTTAGCTCTCGGGCGGATTGGCTGTCGTTATCTCCGTCGTTGTTCTCCGT
*****************************************************((((..(((((((((((((...((((...))))))))))).............((((((((...)))))))).....((((......))))....))))))))))...........................***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...............................................................................TGGAATTGAAGTTAT............................................................................................................................................................ 15 1 16 1.00 16 16 0 0
..................................................................................ACGTGAAGTTATACTTGTG..................................................................................................................................................... 19 2 6 0.17 1 0 1 0
..............................TTTGTTTTAGACCTTAA........................................................................................................................................................................................................... 17 1 7 0.14 1 0 1 0
..........................................................TCTTTACCACGAATAAAG.............................................................................................................................................................................. 18 2 12 0.08 1 0 1 0
............................................................................................CTACTTGTCCAAGGTCT............................................................................................................................................. 17 2 20 0.05 1 0 0 1

Generated: 04/24/2015 at 10:47 AM