ID:

dsi_6760

 Coordinate:

3l:8317580-8317766 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-62.4 -62.4 -62.4

Flybase annnotation

CDS [3l_8317399_8317579_+]; exon [3l_8317345_8317579_+]; CDS [3l_8317767_8318533_+]; exon [3l_8317767_8318533_+]; intron [3l_8317580_8317766_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTATTTGGCACAGAAAGACGGCACCGTGCCGTTTTGGGAGTACGGGGGAAGTGAGTACGAGTGGAAGACGCAGCTCCACGTCAGTTGTTTTGGCCCACTCGCTGCTGCTCTGCGGCCGTGGGTGCGAGCGAGATGGCGCGAGGCGGCCAAGTGTACACGCAGGCACTTTGTTTGGATGTCGTTTTGACCACGATTCCGGGTGTTTCTATAGCCACAACTTGTTGCTCCTCATTTCAGATGCCATCGCCAGTTCGGAAAGTGTGCGCGTGGCGCCATCGCTGCGCTCA
**************************************************..((((((((((......(((..(((..(((((.((((((..((((((..(((((......))))).))))))..))))))..))))).))))))((.((((((........)))))).))..(((.(((((.......))))))))((.(((....))).))...))))).)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 GSM343915
embryo
 M023
head
..........................................................................................................................TGCGAGCGTGACGGCGCGAGC................................................................................................................................................ 21 3 15 13.80 207 207 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CCAGTTCGGAAAGTGTGCGCGTGGC................ 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................................GAACTTAGTACGAGAGGAA............................................................................................................................................................................................................................. 19 3 8 1.13 9 1 0 0 2 2 1 0 0 2 0 1
..............................................GGAGGTGAGTACGTGTGGAAC............................................................................................................................................................................................................................ 21 3 4 1.00 4 0 4 0 0 0 0 0 0 0 0 0
................................................AAGTTAGTACGAGAGGAACAC.......................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................TCGGAAAGTGTGCGCGTGGCGCCAT........... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................GCCGTTTTGGGAGCACGGGGG............................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................GCCAGTTCGGAAAGTGTGCGCG.................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................GGACGTGAGTCCGAGTGGA.............................................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................TTCGGAAAGTGTGCGCGTGGCGCCA............ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................GTCAGTTGTTTTGGCCCAC............................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................CGCCAGTTCGGAAAGG........................... 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................GCGGCCGTAGGTTCGA................................................................................................................................................................ 16 2 9 0.33 3 0 0 0 0 0 0 0 3 0 0 0
...............................................GAGGTGAGTACGTGTGGAACA........................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................TGCGAGCGTGACGGCGCGAG................................................................................................................................................. 20 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...............................................GAAGTTAGTACGAGAGG............................................................................................................................................................................................................................... 17 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................CGATTCCGGGGGTTTGTA............................................................................... 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................CGAGATGGCTTGTGGCGGCCA.......................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................................AAGTGAGTACGTGTGGAAC............................................................................................................................................................................................................................ 19 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGCGAGCGTGACGGCGCGAGCC............................................................................................................................................... 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CGGGAAGTGAGAGCGTGGC................ 19 3 19 0.11 2 0 0 0 0 0 0 2 0 0 0 0
...............................................................................................................GCGGCTTTGGGTGCGAG............................................................................................................................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TCGCCAGATCGGAAAGTGAT........................ 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
................................................AGGTGAGTACGTGTGGAACA........................................................................................................................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCGAGCGTGAAGGCGCGAGC................................................................................................................................................ 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGCGAGCGTGACGGCGCG................................................................................................................................................... 18 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................AAGCGATCGCAAGTTCGGA............................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACGATTTCGGGAGTTTC................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................GCTGAGCGGCCGTCGGTGC.................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................CGGCCGTAGGTTCGA................................................................................................................................................................ 15 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CATAAACCGTGTCTTTCTGCCGTGGCACGGCAAAACCCTCATGCCCCCTTCACTCATGCTCACCTTCTGCGTCGAGGTGCAGTCAACAAAACCGGGTGAGCGACGACGAGACGCCGGCACCCACGCTCGCTCTACCGCGCTCCGCCGGTTCACATGTGCGTCCGTGAAACAAACCTACAGCAAAACTGGTGCTAAGGCCCACAAAGATATCGGTGTTGAACAACGAGGAGTAAAGTCTACGGTAGCGGTCAAGCCTTTCACACGCGCACCGCGGTAGCGACGCGAGT
**************************************************..((((((((((......(((..(((..(((((.((((((..((((((..(((((......))))).))))))..))))))..))))).))))))((.((((((........)))))).))..(((.(((((.......))))))))((.(((....))).))...))))).)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................................GCCCACAAAGATATCGGTGTT...................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................AGCGGTCAAGCCTTTCACACG....................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................AGGAGTAAACTCTAAGGTA........................................... 19 2 2 1.00 2 0 0 2 0 0 0 0
............................................................................................................................................................................................................................CAACGCGGGCTAAAGTCTACG.............................................. 21 3 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................GGCCCACAAAGATATCGGTGT....................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................TACGGGAGCGGTCAAGTCTAT............................. 21 3 2 0.50 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................ACAAAGATATCGGTCT....................................................................... 16 1 7 0.14 1 0 0 0 0 0 1 0
.................................................................................................................................................CGTGTCACAAGTGCGTCCGT.......................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:49 AM