ID:

dsi_6748

Coordinate:

3l:7588332-7588479 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-24.2	-23.6	-23.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATCGTCAGTGATTGTTTTATACGCACTTATGTGTATCGGATTCTCCACAGGTAAGTTGTGAATCTATTATAACATAAATTTATTTGTTTAAATTGATTGAAAAAGCATTAATGGTGTGAAAAACTATTTAGGCTAAATGGTCAGTTTATTATATACTCAATTTTAATTTCATTGATTTTTAATGAATTGATTTTACAGCTTCGTTAAATGATAATCCCGAAATCACCCCCGCAATAGATAACAATTTA ************************************************(((((((((((.....)))))))...((((((......)))))).........(((...((((((.......))))))...)))....(((((((((((((.....(((((.........)))))....)))))))))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
.....................................................................................................................................................................ATTTCATTGATTTTTAAT.................................................................	18	0	1	1.00	1	1	0	0
......................................................................................................................................................................TTTCATTGATTTTTATTGA...............................................................	19	1	2	0.50	1	1	0	0
.....................................GGAGTCTCCCCAGGTAAGA................................................................................................................................................................................................	19	3	6	0.17	1	0	1	0
.........................................................................................................................................................TACTCAAATTTAATTTC..............................................................................	17	1	9	0.11	1	0	0	1
......................................GAGTCTCCCCAGGTAAGA................................................................................................................................................................................................	18	3	19	0.11	2	0	2	0
.........................................TCACCACAGGTAAGT................................................................................................................................................................................................	15	1	18	0.06	1	0	0	1

Anti-sense strand reads

TAGCAGTCACTAACAAAATATGCGTGAATACACATAGCCTAAGAGGTGTCCATTCAACACTTAGATAATATTGTATTTAAATAAACAAATTTAACTAACTTTTTCGTAATTACCACACTTTTTGATAAATCCGATTTACCAGTCAAATAATATATGAGTTAAAATTAAAGTAACTAAAAATTACTTAACTAAAATGTCGAAGCAATTTACTATTAGGGCTTTAGTGGGGGCGTTATCTATTGTTAAAT ************************************************(((((((((((.....)))))))...((((((......)))))).........(((...((((((.......))))))...)))....(((((((((((((.....(((((.........)))))....)))))))))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
....................................ACCTCAGAGGGGTCCATTC.................................................................................................................................................................................................	19	3	10	0.40	4	4	0	0
............ACAAAATATGCGTTAAT...........................................................................................................................................................................................................................	17	1	6	0.17	1	0	1	0
..................................TAGCCGAAGAGGTGT.......................................................................................................................................................................................................	15	1	11	0.09	1	0	0	1
..............................................................................................................................................................................................................................ATTGCGGGCGTTATCTA.........	17	2	14	0.07	1	0	0	1

Generated: 04/24/2015 at 10:23 AM