ID:

dsi_6720

 Coordinate:

3r:4165079-4165228 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.8 -22.8 -22.6

Flybase annnotation

CDS [3r_4165229_4165426_+]; exon [3r_4165229_4165426_+]; intron [3r_4164850_4165228_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCATTAGATACATTTGTATAGTTTATGTTTAAGTAGTTAACACTGCTCGCAATCTTACTCCTTGATTTAAGAGCACAAATTAGTAATTATTTATCTTAGAAGTTCTTTTACTGCAGATAGAATTGATTTTACACCTTTCTAATGCAGTAATATGAATGATGGAATGAAATTTATAACATTCTTTCCTTGTCTATGTCCAGAGTACTCCTGCCACGGATCCTGGAGCGAAAACAGCACCTTCTACATCATA
**************************************************...............(((((((.....((((...)))).....))))))).((((..((((((((..(((((..............))))).))))))))...))))((.((((((..........)))))).))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................CGTTCCTTGTCTATGTTC.................................................... 18 2 2 8.50 17 10 0 7 0 0 0 0 0
.....................................................................................................................TAGAATTGATTTTACA..................................................................................................................... 16 0 1 2.00 2 0 2 0 0 0 0 0 0
....................................................................................................................GTAGAATTGATTTTACA..................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................GGATCCTGGAGCGAAAACAGC............... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................CGTTCCTTGTCTATG....................................................... 15 1 4 0.75 3 0 0 0 0 2 0 0 1
.....................................................................................................................TAGAATTGATTTTACACGTG................................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0
...............................................................................................................TGAACGTAGAATTGATTTTAC...................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................TGTCCGGAGTAATCCTGCC...................................... 19 2 2 0.50 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................................CGTTCCTTGTCTATGTTCC................................................... 19 3 18 0.33 6 4 0 1 0 1 0 0 0
....................................................................................................................................................................................CGTTCCTTGTCTATGT...................................................... 16 1 3 0.33 1 0 0 0 0 0 1 0 0
...................................................................................................................CGTAGAATTGATTTTACA..................................................................................................................... 18 2 8 0.25 2 0 2 0 0 0 0 0 0
....................................................................................................................................................................................CGTTCCTTGTCTATGTTCCG.................................................. 20 3 8 0.25 2 2 0 0 0 0 0 0 0
.....................................................CTTATTCGTTGATTTAAG................................................................................................................................................................................... 18 2 8 0.13 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................CCGTTCCTTGTCTATGTTC.................................................... 19 3 20 0.10 2 0 0 2 0 0 0 0 0
......................................................................................................................................................................................TTCCTTGTCTATGTT..................................................... 15 1 12 0.08 1 0 0 0 0 0 1 0 0
............................................................................................................TACTGCACATAGAAT............................................................................................................................... 15 1 14 0.07 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................................CGTTCCTTGTCTATGTT..................................................... 17 2 17 0.06 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................CCGTTCCTTGTCTATGT...................................................... 17 2 18 0.06 1 0 0 0 0 0 1 0 0
...................................................................................................................GATAGAATTGATTGT........................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGTAATCTATGTAAACATATCAAATACAAATTCATCAATTGTGACGAGCGTTAGAATGAGGAACTAAATTCTCGTGTTTAATCATTAATAAATAGAATCTTCAAGAAAATGACGTCTATCTTAACTAAAATGTGGAAAGATTACGTCATTATACTTACTACCTTACTTTAAATATTGTAAGAAAGGAACAGATACAGGTCTCATGAGGACGGTGCCTAGGACCTCGCTTTTGTCGTGGAAGATGTAGTAT
**************************************************...............(((((((.....((((...)))).....))))))).((((..((((((((..(((((..............))))).))))))))...))))((.((((((..........)))))).))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body		 M053
female body
 GSM343915
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................................................AGAATCTTCAAGAAAATGACGTCT..................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GGAAAGATTACGTCATTATAATTACT........................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTGCCGTGGAAGATGTAGTT. 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................ACTTGCATCTTAACTAAAATG...................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCTAGCTTGTGTCCTGGA........... 19 3 20 0.35 7 0 0 2 0 4 1 0 0 0 0
...............CGTATCAAATACCAATTC......................................................................................................................................................................................................................... 18 2 13 0.23 3 0 0 0 0 1 2 0 0 0 0
.......................................................ATGAGAAGTTAAATTCTCGTG.............................................................................................................................................................................. 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.............................ATTTATCGATTGTGACGA........................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
................................................................TACATTCTCGTCTTTAATTAT..................................................................................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................GGAACTATTACGTCATT.................................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0
..............CCATATCAAATACCAATTCT........................................................................................................................................................................................................................ 20 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................CGCTTTTGTCCTGGAA.......... 16 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................AAAGAAAATGACGTC...................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.................TATCAAATACCAATTCT........................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 09:43 PM