ID:

dsi_6676

Coordinate:

3l:16214859-16215003 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACCACCAACAAGCAGGGCAAACAGGCGCCCGCCCCACCAAAGCGAACCAGGTAAGACGACGACTTCTCTGGATGTGTGGATCAGAACGAGCTGTTCAAGTAAAACCATTTATGACGGGGAAAAACCCAAGAAGAGGAGCTAGGATCAATGGCAAGCCCACCAAAAGTTAATCATCTAATTTTAATATATTTATAGCCTGCTCTCGAGCAGTCGGGACTCCACTTATCGCGAGGAGGATCCAGCGA ************************************************...(((.((.(((((...(((.(((...((((......((((.(((..(((((....)))))...(((......))).....))).))))..))))....)))...)))....)))))..)).)))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo	M024 male body	SRR553486 Makindu_3 day-old ovaries
..................................................................................................................................................................................TTTGAATATATTTATAGCC................................................	19	1	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................ACTTATCGCGAGGAGG.........	16	0	1	1.00	1	0	1	0	0	0	0
.......................................................ACGACGACTTTTCGGGAT............................................................................................................................................................................	18	2	3	0.33	1	0	0	1	0	0	0
...................................................................................................................................AGAGGAGCCAGGGTCAACGGC.............................................................................................	21	3	6	0.17	1	0	0	1	0	0	0
........................................AGCGAACCAGGTAAC..............................................................................................................................................................................................	15	1	6	0.17	1	0	1	0	0	0	0
....................................................................................................................................GAGGAGGAAGGATCAAGGGC.............................................................................................	20	3	10	0.10	1	0	0	0	1	0	0
........................................................................................................................................AGCTAAGATCAATGACAGG..........................................................................................	19	3	20	0.05	1	0	0	0	0	1	0
..........................................................................................................ATTCATGACTGGGAAA...........................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

TGGTGGTTGTTCGTCCCGTTTGTCCGCGGGCGGGGTGGTTTCGCTTGGTCCATTCTGCTGCTGAAGAGACCTACACACCTAGTCTTGCTCGACAAGTTCATTTTGGTAAATACTGCCCCTTTTTGGGTTCTTCTCCTCGATCCTAGTTACCGTTCGGGTGGTTTTCAATTAGTAGATTAAAATTATATAAATATCGGACGAGAGCTCGTCAGCCCTGAGGTGAATAGCGCTCCTCCTAGGTCGCT ************************************************...(((.((.(((((...(((.(((...((((......((((.(((..(((((....)))))...(((......))).....))).))))..))))....)))...)))....)))))..)).)))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	GSM343915 embryo
.........................................................................................................................................................................TAGTAGATTAAAATTATA..........................................................	18	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................CGGGTGATTTTCGATAAGTA.......................................................................	20	3	13	0.15	2	0	0	2	0	0
........................................................................................................................................................................................ATATAGATGTCGGACGGGA..........................................	19	3	19	0.11	2	0	2	0	0	0
.GGTTGTTGTTCTTCCGGTTTGT..............................................................................................................................................................................................................................	22	3	10	0.10	1	0	0	0	0	1
.........................................................................................................................................................................TAGTATATTAAAATTATA..........................................................	18	1	10	0.10	1	1	0	0	0	0
.................................................................................................................................................................................................TCGGACGAGAGGTCGCC...................................	17	2	20	0.05	1	0	1	0	0	0
.......................CCCCGGGCAGGGTGGT..............................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0
.......................................TTCGCCTGGACCATTC..............................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0

Generated: 04/24/2015 at 03:10 AM