ID:dsi_6665 |
Coordinate:2r:5293413-5293603 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
CDS [2r_5293604_5293618_-]; five_prime_UTR [2r_5293619_5293756_-]; CDS [2r_5292936_5293412_-]; exon [2r_5292799_5293412_-]; exon [2r_5293604_5293756_-]; intron [2r_5293413_5293603_-]
No Repeatable elements found
| ##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCACAACTACCAACCACCCACTCACCTCAGCCAACATGTTCTGCAAGCTGGTAAGTGCCCTTTGAGTCGAGTTTCTGCCCACAAGGATAGCGTCTGAAAAAGTTCCTTTAACTACTAAGTGGATCCATATCTGCAACAACTTAGTTGAAGTTCTTAAGATCTGAAGATCTAAGTTCAAGATATTCTACAGATGTATCTTATTACATTTACGAATTCAATATATTTGTAATCTTTTCACTAGCTTTTCGCTACCTTCGTGGCCCTGGCGGTTGCCAAGCCCCAGCACCAACC **************************************************...((((...(((.((.((...((((.......))))...)).)).)))......(((((((((....((((((....)))))).......)))))))))..((((.((((....))))))))...(((((((((....)).))))))).......((((((((.......))))))))......))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................AACATGTTCTGCAAGCTG................................................................................................................................................................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................AAGCTGGTAAGAGCC........................................................................................................................................................................................................................................ | 15 | 1 | 5 | 0.40 | 2 | 0 | 1 | 1 | 0 | 0 | 0 |
| .......................................TCTGCAAACTCGTAAGTG.......................................................................................................................................................................................................................................... | 18 | 2 | 4 | 0.25 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................AAGCTGGTAAGAGCCT....................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.20 | 4 | 0 | 0 | 3 | 0 | 0 | 1 |
| ..............................................GCTGGTAAGGGCCCTGGGA.................................................................................................................................................................................................................................. | 19 | 3 | 11 | 0.09 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................GATACCTTCGGGACCCTGG......................... | 19 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................................................ATCTGAAGATCTATGCT.................................................................................................................... | 17 | 2 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
|
GGTGTTGATGGTTGGTGGGTGAGTGGAGTCGGTTGTACAAGACGTTCGACCATTCACGGGAAACTCAGCTCAAAGACGGGTGTTCCTATCGCAGACTTTTTCAAGGAAATTGATGATTCACCTAGGTATAGACGTTGTTGAATCAACTTCAAGAATTCTAGACTTCTAGATTCAAGTTCTATAAGATGTCTACATAGAATAATGTAAATGCTTAAGTTATATAAACATTAGAAAAGTGATCGAAAAGCGATGGAAGCACCGGGACCGCCAACGGTTCGGGGTCGTGGTTGG
**************************************************...((((...(((.((.((...((((.......))))...)).)).)))......(((((((((....((((((....)))))).......)))))))))..((((.((((....))))))))...(((((((((....)).))))))).......((((((((.......))))))))......))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR902009 testis |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................TAGTGGAGTCGGTTGTAAAAGTC........................................................................................................................................................................................................................................................ | 23 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................TGGAGTCGGTTGTAAAAGTCTT...................................................................................................................................................................................................................................................... | 22 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................AGTCGGTTGTTCAAGACG....................................................................................................................................................................................................................................................... | 18 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................ATTGACGTTGTTGAA..................................................................................................................................................... | 15 | 1 | 20 | 0.25 | 5 | 1 | 3 | 0 | 0 | 0 | 1 |
| ...............................................................................................................................ATTGACGTTGTTGAAT.................................................................................................................................................... | 16 | 1 | 8 | 0.25 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................................................ACGGGAAACTCAGAGCAA.......................................................................................................................................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......ATGGTGGGTGGGTGAGGGGA........................................................................................................................................................................................................................................................................ | 20 | 2 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .........................................................GGGAAACTTAGCTCA........................................................................................................................................................................................................................... | 15 | 1 | 11 | 0.09 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................................AGAAAAGTGGTCGCAAAG............................................ | 18 | 2 | 12 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................GAAGGGAATGGATGATTCA........................................................................................................................................................................... | 19 | 3 | 15 | 0.07 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................................................................................................................................GGACCGCCAACGGTA............... | 15 | 1 | 17 | 0.06 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................TGAAAAGCGATGGAATC.................................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................................................................................................................................................................AAGCGATGGAATCCCC............................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| GGTGTTGAGGGTTGG.................................................................................................................................................................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................................................................CATCGGTTCGGGTTGGTGGT... | 20 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................AAGGGTATTGATGATTC............................................................................................................................................................................ | 17 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
Generated: 04/23/2015 at 12:05 PM