ID:

dsi_6663

 Coordinate:

2l:22128451-22128600 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.7 -24.1 -24.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DMCR1ALINECR1-

Sense Strand Reads

GCATAAGTCCAGATCCGGATAAACACTCATCAACGTTTGTCATTCAACCGGTGAGTGCAACCGGTACAACAAATTGAAACTAACTTGTTTCAGCCCCTGTTATTTTGTTTTCATAAGTTCAATTTAAATTTAACCATGGCTTGGCTTGTTAATTATAAATTGACTATATTAACTTTCAAATTTAATTAGGTTTATTCATTTCGCTAGTCCGTCCGATTCTTGAGTATGGATCACCTCTTTGGAGTCCTCA
**************************************************(((((((.((((.....(((((((((((((......)))))))..........))))))......(((.(((((((...(((((...(((...))).)))))...)))))))))).......................))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
............................................................................................................................................................................................................................TGAGTATGGATCACCTCTTTGGA....... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGAGTATGGATCACCTCTTTGGACT..... 25 1 1 1.00 1 0 0 0 1 0 0 0 0
.............TCCGGATAAACACTCATCAACGTT..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................................................................TTCATAAGTTCAATT.............................................................................................................................. 15 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................CATTTCGCTAGTCCGTCCGATTCTTGA........................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTCGCTAGTCCGTCCGATTC............................... 20 0 10 1.00 10 0 10 0 0 0 0 0 0
.........CAGATCCGGATAAACACTCATCAAC........................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTCGCTAGTCCGTCCGAT................................. 18 0 10 1.00 10 0 10 0 0 0 0 0 0
....................................................................................................................................................................................................CATTTCGCTAGTCCGTCC.................................... 18 0 4 0.75 3 0 3 0 0 0 0 0 0
......................................................................................................................................................................................................TTTCGCTAGTCCGTCCGATTCTTGA........................... 25 0 4 0.50 2 0 0 0 1 1 0 0 0
............................................................................................................................................................................................................TAGTCCGTCCGATTCTTGAGTATGGA.................... 26 0 16 0.44 7 2 0 4 0 0 1 0 0
...............................................................................................................................................................................................TTATTCATTTCGCTAGTCCGTCCGA.................................. 25 0 3 0.33 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTGGATCACCTCTTT.......... 16 1 3 0.33 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................GTCTGGATCACCTCTTT.......... 17 1 3 0.33 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................TTGAGTATGGATCACCTCTTTA......... 22 1 3 0.33 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................................TATTCATTTCGCTAGTCCGTCCGA.................................. 24 0 3 0.33 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................TTCGCTAGTCCGTCCGATTCTTGAGT......................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................CATTTCGCTAGTCCGTCCGATTC............................... 23 0 4 0.25 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGCTAGTCCGTCCGATTCTTGAGG......................... 24 1 4 0.25 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................TTTCGCTAGTCCGTCCGATTCTTGAG.......................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TCATTTCGCTAGTCCGTCCGA.................................. 21 0 4 0.25 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................CATTTCGCTAGTCCGTCCGATTCT.............................. 24 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTTCGCTAGTCCGTCCGATTCTGGA........................... 25 1 5 0.20 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................TTCGCTAGTCCGTCCGATTCT.............................. 21 0 9 0.11 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................TTTCGCTAGTCCGTCCG................................... 17 0 9 0.11 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................GCTAGTCCGTCCGATTCT.............................. 18 0 10 0.10 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................TTTCGCTAGTCCGTC..................................... 15 0 10 0.10 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................TCGCTAGTCCGTCCGATTC............................... 19 0 10 0.10 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TGCGGTTGGATCACCTCTTT.......... 20 3 10 0.10 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................CTAGTCCGTCCGATTC............................... 16 0 11 0.09 1 0 0 1 0 0 0 0 0
....................................................................................................TATTTTGTTTTCATA....................................................................................................................................... 15 0 11 0.09 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTCTTGAGTATGGATCACCT.............. 20 0 14 0.07 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................CGATTCTTGAGTATGGATC.................. 19 0 15 0.07 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................TAGTCCGTCCGATTCTTGAGTATGGAT................... 27 0 15 0.07 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................GTCCGTCCGATTCTTGAGTATGGA.................... 24 0 16 0.06 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................AGTCCGTCCGATTCTTGAGTATGGA.................... 25 0 16 0.06 1 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................TAGTCCGTCCGATTCTTGAGTATGGG.................... 26 1 16 0.06 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................TAGTCCGTCCGATTCTTG............................ 18 0 20 0.05 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................CTTGAGTATGGAACA................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGTATTCAGGTCTAGGCCTATTTGTGAGTAGTTGCAAACAGTAAGTTGGCCACTCACGTTGGCCATGTTGTTTAACTTTGATTGAACAAAGTCGGGGACAATAAAACAAAAGTATTCAAGTTAAATTTAAATTGGTACCGAACCGAACAATTAATATTTAACTGATATAATTGAAAGTTTAAATTAATCCAAATAAGTAAAGCGATCAGGCAGGCTAAGAACTCATACCTAGTGGAGAAACCTCAGGAGT
**************************************************(((((((.((((.....(((((((((((((......)))))))..........))))))......(((.(((((((...(((((...(((...))).)))))...)))))))))).......................))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR902009
testis
 SRR1275483
Male prepupae		 M023
head
......................................................................................................................................................................................................AAAGCGATCAGGCAGGCTAAGAACTCAT........................ 28 0 2 12.00 24 16 2 0 2 1 3 0 0 0 0 0
.....TCAGGTCTAGGCCTATTTGTGAGTAGT.......................................................................................................................................................................................................................... 27 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAGCGATCAGGCAGGCTAAGAACT........................... 25 0 4 5.50 22 6 10 0 0 0 5 1 0 0 0 0
............................................................................................CGGGGACAATAAAACAAAAGTATTCAAGT................................................................................................................................. 29 0 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACTCAT........................ 21 0 20 4.95 99 79 13 1 2 0 4 0 0 0 0 0
..................................................................................................................................................................................................................................ACCTAGTGGAGAAACCTCAGGAG. 23 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGAAAGTTTAAATTAATCCAAATAAGT.................................................... 27 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGAACTCATACCTAGTGGAGAAACCT....... 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGGCTAAGAACTCATACCTAGTGGAG............. 26 0 1 3.00 3 1 0 0 1 0 1 0 0 0 0 0
.....TCAGGTCTAGGCCTATTTGTGAGTAGTT......................................................................................................................................................................................................................... 28 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................AGCGATCAGGCAGGCTAAGAACTCAT........................ 26 0 2 3.00 6 4 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACTCAT........................ 20 0 20 2.85 57 39 10 0 1 6 1 0 0 0 0 0
..........................................................................................................................................................................................................CGATCAGGCAGGCTAAGAACT........................... 21 0 4 2.75 11 3 2 1 0 0 0 5 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACTCATACCTAGT................. 27 0 12 2.42 29 4 1 0 0 20 4 0 0 0 0 0
...............................................................................................................................................................................................................AGGCAGGCTAAGAACTCATACCTAGT................. 26 0 12 2.25 27 2 3 0 10 9 2 0 0 1 0 0
.......................................................................................................................................................................................................AAGCGATCAGGCAGGCTAAGAACTCAT........................ 27 0 2 2.00 4 0 3 0 0 0 1 0 0 0 0 0
............................................................................................CGGGGACAATAAAACAAAAGTATTCAAGTT................................................................................................................................ 30 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CATACCTAGTGGAGAAACCTCAGGAG. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTAGTGGAGAAACCTCAGGAG. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGGCTAAGAACTCATACCTAGTGGAGA............ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................TTGTGAGTAGTTGCAAACAGTAAGTT........................................................................................................................................................................................................... 26 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AAGCGATCAGGCAGGCTAAGAACT........................... 24 0 4 1.50 6 2 3 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AAAACGATCAGGCAGGCTAAGAACTCAT........................ 28 1 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCAGGCTAAGAACTCATACCT.................... 23 0 16 1.13 18 9 1 0 0 7 0 0 0 1 0 0
................................................................................................................................................................................................................GGCAGGCTAAGAACTCATA....................... 19 0 18 1.11 20 0 0 0 0 0 0 0 20 0 0 0
...........................................................TGGCCATGTTGTTTAACTTTGATTGAACAA................................................................................................................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AAGAACTCATACCTAGTGGAGAAACCT....... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGATCAGGCAGGCTAAGAACTCAT........................ 24 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................CGGGGACAATAAAACAAAAGTATTCAATTT................................................................................................................................ 30 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................TGGCCATGTTGTTTAACTTTGATT....................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................ACAAAGTCGGGGACAATAAAACAAAAGT......................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCATACCTAGTGGAGAAACCTCAGGAG. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................CACTCACGTTGGCCATGTTGTTTAACTT............................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GCGATCAGGCAGGCTAAGAACTCAT........................ 25 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0
.......AGGTCTAGGCCTATTTGTGAGTAGT.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........CTAGGCCTATTTGTGAGTAGTTGCA...................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TGATTGAACAAAGTCGGGGACAAT.................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................CACTCACGTTGGCCATGTTGTTTAACT............................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................CAAAGTCGGGGACAATAAAACAAAAGT......................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAAAGCGATCAGGCAGGCTAAGAACTCAT........................ 29 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCAGGCTAAGAACTCATACCTAGTGGAG............. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................AGTTGCAAACAGTAAGTTGGCCACT.................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TAGTGGAGAAACCTCAGGAG. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CCAAATAAGTAAAGCGATCAGGC....................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................GGCTAAGAACTCATACCTAGTGGAG............. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...ATTCAGGTCTAGGCCTATTTGTGAGT............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................TGGCCATGTTGTTTAACTTTGAT........................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATACCTAGTGGAGAAACCTCAGGA.. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................AAAAAACAAAAGTATTCAAGTTAAAT............................................................................................................................ 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................AAAGTCGGGGACAATAAAACAAAAGT......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTAACTGATATAATTGAAAGTTT...................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................CGATCAGGCAGGCTAAGAACTCATACC..................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTCATACCTAGTGGAGAAACCTCAGGAG. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................ATTTGTGAGTAGTTGCAAACAGTAAGT............................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................CCACTCACGTTGGCCATGTTGTTT................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................GGCCATGTTGTTTAACTTTGATTGAACA.................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TCAAGTTAAATTTAAATTGGTACCGAAC........................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................TGTGAGTAGTTGCAAACAGTAAGT............................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACTCATACCT.................... 24 0 16 0.81 13 1 0 0 0 9 0 0 0 3 0 0
......................................................................................................................................................................................................AAAGCGATCAGGCAGGCTAAGAACTCA......................... 27 0 4 0.75 3 1 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGCAGGCTAAGAACTCATACCTAGT................. 25 0 12 0.67 8 0 0 0 1 7 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACTCATACCTAGTGG............... 29 0 12 0.67 8 4 0 0 3 0 1 0 0 0 0 0
..................................................................................................................................................................................................AAGTAAAGCGATCAGGCAGGCTAAGAA............................. 27 0 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGCAGGCTAAGAACTCATACCT.................... 22 0 16 0.63 10 0 0 0 0 10 0 0 0 0 0 0
...........................................................................................................................................................................................................GATCAGGCAGGCTAAGAACTCAT........................ 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGATCAGGCAGGCCAAGAACTCAT........................ 24 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................GGAGAAACCTCAGGAG. 16 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGGCTAAGAACTCATACCTAGTGGA.............. 25 0 14 0.50 7 1 0 1 1 0 4 0 0 0 0 0
.......................................................................................................................................................................................................................................GTGGAGAAACCTCAGGAG. 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAAACGATCAGGCAGGCTAAGAACTCAT........................ 29 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATCAGGCAGGCTAAGAACTCATACCT.................... 26 0 16 0.50 8 0 0 0 0 6 1 0 0 1 0 0
.......................................................................................................................................................................................................TAGCGATCAGGCAGGCTAAGAACTCAT........................ 27 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................AACGATCAGGCAGGCTAAGAACTCAT........................ 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAGGCAGGCTAAGAACTCATACCTAGT................. 28 1 14 0.50 7 1 0 0 0 5 0 0 0 1 0 0
......................................................................................................................................................................................................AAAGCGAGCAGGCAGGCTAAGAACTCAT........................ 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GATCAGGCAGGCTAAGAACT........................... 20 0 4 0.50 2 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAAGCGATCAGGCAGGCTAAGAACT........................... 26 1 4 0.50 2 0 0 0 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................AAGGCAGGCTAAGAACTCAT........................ 20 1 20 0.45 9 1 1 0 1 6 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAA............................. 16 0 20 0.45 9 0 0 8 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGGCTAAGAACTCATACCTAGTGG............... 25 0 14 0.43 6 2 0 0 1 0 3 0 0 0 0 0
...................................................................................................................................................................................................................AGGCTAAGAACTCATACCTAGTGG............... 24 0 14 0.43 6 1 2 0 2 0 1 0 0 0 0 0
................................................................................................................................................................................................................GGCAGGCTAAGAACTCATACCTAGTGG............... 27 0 12 0.42 5 1 1 0 0 2 1 0 0 0 0 0
........................................................................................................................................................................................................TGCGATCAGGCAGGCTAAGAACTCAT........................ 26 1 5 0.40 2 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACT........................... 18 0 20 0.35 7 2 0 4 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACTCATACCTAGT................. 28 0 12 0.33 4 0 0 0 0 4 0 0 0 0 0 0
..............................................................................................................................................................................................................AAGGCAGGCTAAGAACTCATACCT.................... 24 1 18 0.33 6 1 1 0 0 4 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAGGCAGGCTAAGAACTCATACCT.................... 25 1 18 0.33 6 0 0 0 0 6 0 0 0 0 0 0
......................................................................................................................................................................................................TAAGCGATCAGGCAGGCTAAGAACTCAT........................ 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAAACGATCAGGCAGGCTAAGAACTCAT........................ 28 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACTCATACCT.................... 25 0 16 0.31 5 0 0 1 0 4 0 0 0 0 0 0
.......................................AGTAAGCCGGCCACTCA.................................................................................................................................................................................................. 17 2 11 0.27 3 0 0 0 0 0 2 0 0 0 1 0
.........................................................................................................................................................................................................GCGATCAGGCAGGCTAAGAACT........................... 22 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................AAGCGATCAGGCAGGCTAAGAACTC.......................... 25 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACT........................... 17 0 20 0.25 5 2 0 1 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATCAGGCAGGCTAAGAACTCAT........................ 22 0 20 0.25 5 0 0 0 2 2 1 0 0 0 0 0
......................................................................................................................................................................................................AAAACGATCAGGCAGGCTAAGAACT........................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAGGCAGGCTAAGAACTCATACCTAGT................. 27 1 12 0.25 3 0 0 0 0 2 1 0 0 0 0 0
......................................................................................................................................................................................................AAAGCGATCAGGCAGGCTAAGAACTC.......................... 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCAGGCTAAGAACTCAT........................ 19 0 20 0.25 5 0 2 0 0 2 0 0 0 1 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAAC............................ 16 0 20 0.25 5 0 0 0 5 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AAGCGATCAGGCAGGCTAAGAACTCA......................... 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCAGCGATCAGGCAGGCTAAGAACTCAT........................ 28 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AGCGATCAGGCAGGCTAAGAACTCA......................... 25 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................GCAGGCTAAGAACTCATACCTAGT................. 24 0 13 0.23 3 0 0 0 0 3 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAAGCGATCAGGCAGGCT.................................. 19 1 9 0.22 2 0 0 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................ATATGTAAAACGATCAGGAAGGCT.................................. 24 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AAAGCGATCAGGCAGGCTAAGAAC............................ 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGATCAGGCAGGCTAAGAACT........................... 21 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TTAAGCGATCAGGCAGGCTAAGAACT........................... 26 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACTCATACC..................... 23 0 16 0.19 3 0 0 0 0 2 0 0 0 1 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACTCATACCTAGTGG............... 30 0 12 0.17 2 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCAGGCTAAGAACTCATACCTAGTGG............... 28 0 12 0.17 2 0 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTGCGATCAGGCAGGCTAAGAACTCAT........................ 27 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GAAGCGATCAGGCAGGCTAAGAACTCA......................... 27 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................TTCAGGCAGGCTAAGAACT........................... 19 1 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0
............................................................................................................................................................................................................TTCAGGCAGGCTAAGAACTCAT........................ 22 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGCAGGCTAAGAACTCAT........................ 19 1 20 0.15 3 1 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TTAGGCAGGCTAAGAACT........................... 18 1 20 0.15 3 2 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGCAGGCTAAGAACTCAT........................ 18 0 20 0.15 3 2 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGTAGGCTAAGAACTCAT........................ 21 1 20 0.15 3 0 0 0 1 0 2 0 0 0 0 0
......................................................................................................................................................................................................AAAACGATCAGGCAGGCTAAGAA............................. 23 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGGCTAAGAACTCATACCTAGTGGA.............. 26 0 14 0.14 2 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGCTAAGACCTCATACCTAGTGGAT............. 25 2 14 0.14 2 0 0 0 0 0 0 0 0 2 0 0
....................................................................................................................................................................................................................GGCTAAGAACTCATACCTAGTGG............... 23 0 14 0.14 2 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAGCGATCAGGCAGGCTAAGAA............................. 23 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTCAGCGATCAGGCAGGCTAAGAACT........................... 26 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACTCATACCTA................... 25 0 15 0.13 2 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................AAGCGATCAGGCAGGCTAAGAA............................. 22 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................AAACGATCAGGCAGGCTAAGAA............................. 22 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCAGGCTAAGAACTCATACCT.................... 21 0 17 0.12 2 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................................................................................AAAGCGATCAGGCAGGCT.................................. 18 0 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AAAGCGATCAGGCAGGC................................... 17 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAAAGCGATCAGGCAGGCT.................................. 19 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGACAGGCTAAGAACTCATACC..................... 24 1 19 0.11 2 0 0 0 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................TAAGATCAGGCAGGCTAAGAACT........................... 23 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATCAGGCAGGCTAAGAACT........................... 19 0 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACTC.......................... 19 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................TTAGGCAGGCTAAGAACTCAT........................ 21 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTCAGGCAGGCTAAGAACTCAT........................ 22 1 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAGGCAGGCTAAGAACTCAT........................ 21 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................................AAGAACTCATACCTAGTGGATAAACCTCA..... 29 1 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................AACAGGCAGGCTAAGAACTCAT........................ 22 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCAGGCCAAGAACTCATACCTAGTGG............... 28 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCAGACTAAGAACTCATACCTAGT................. 26 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACTCATACCTAGTGGA.............. 30 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGTAGGCTAAGAACTCATACCTAGT................. 25 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTATCGATCAGGCAGGCTAAGAAC............................ 24 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GAGGCAGACTAAGAACTCATACCTAGT................. 27 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGCAGGCTAAGAACTCATACCTAGT................. 26 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................TTTAGGCAGGCTAAGAACTCATACCTAGTG................ 30 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCAGGCTAAGAACTCATACCTAG.................. 25 0 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................GCAGGCTAAGAACTCATACCTAGTGG............... 26 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACTCATACCTAG.................. 26 0 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................AGGCTAAGAACTCATACCTAGTGTATA............ 27 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGCTAAGAACTCATACCTAGTGGA.............. 24 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................AGGCTAAGAACTCATACCTAGT................. 22 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAGGCAGGCTAAGAACTCATACCTAGT................. 27 1 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................GGCTAAGAACTCATACCTAGT................. 21 0 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TAGGCTAAGAACTCATACCTAGTGG............... 25 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
.......GGGTCGAGGCCTATTTG.................................................................................................................................................................................................................................. 17 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGGCTAAGAACTCATACCTAGT................. 23 0 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................AACAGGCAGGCTAAGAACTCATACCTAGT................. 29 1 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAGGCAGACTAAGAACTCATACCTAGT................. 28 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................TTCAGGCAGGCTAAGAACTCATACCTA................... 27 1 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................ATGGCAGGCTAAGAACTCATACCTAGT................. 27 2 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTATAAACTCATACCTAGTGG............... 29 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCAGGCTAAGAACTCATACC..................... 22 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGGCAGGCTAAGAACTCATACCT.................... 23 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................ATCAGGCAGGCTAAGAACTCATACC..................... 25 0 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAAGCTAAGAACTCATACCT.................... 24 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACTCATACC..................... 24 0 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................CATCAGGCAGGCTAAGAACTCATACC..................... 26 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................TTTTGGCAGGCTAAGAACTCATACCTA................... 27 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................AAGGCTGGCTAAGAACTCATACCT.................... 24 2 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACTCATAC...................... 23 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGGCTAAGAACTCATACCT.................... 20 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACAGGCAGGCTAAGAACTCATACCT.................... 26 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACTCATA....................... 22 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAACTCATA....................... 21 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAGCCATCAGGCAGGCTAAGAACTCAT........................ 28 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGTTAAGAACTCATACCT.................... 24 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGGCTAAGAACTCATACCT.................... 19 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAAGCTAAGAACTCATAC...................... 23 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATGGCAGGCTAAGAACTCATACCT.................... 24 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGCAGGCTAAGAACT........................... 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCGGCAGGCTAAGAACTCAT........................ 20 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGCATGCTAAGAACTCAT........................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCAGGCAGGCTAAGAACTCAT........................ 21 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................CTAGGCAGGCTAAGAACTCAT........................ 21 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TCAGGCAGGCTAAGAACTCAAAC...................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAAGGCAGGCTAAGAACTCAT........................ 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.GTATTCAGGTCGGGGC......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................GCTCAAAGTCGCGGACAAT.................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCAGGCTAAGAACTCATA....................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAGCCATCAGGCAGGCTAAGAACTCA......................... 27 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................GCAGGCTAAGAACTCAT........................ 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCAGGCAGGCTAAGAA............................. 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATATTTAACTGATTCAAT............................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TCAGGTAGGCTAAGAACT........................... 18 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.......................................AGTAAGCCGGCCACTC................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................AATAGGCAGGCTAAGAACTCAT........................ 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TAAGGCAGGCTAAGAACT........................... 18 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................ATCCGGCAGGCTAAGAACTCA......................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TACAGGCAGGCTAAGAACTCAT........................ 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGCAGGCTAAGAA............................. 15 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAGCGATCAGGCAGGCTAAGAGCT........................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:22128401-22128650 - dsi_6663 GCATAAGTCCAGATCCGGATAAACACTCATCAACGTTTGTCATTCAACCGGTGAGTGCAACC-GGT-----------------------ACAACAAATTGAAACTAACTTGTTTCAGCCCCTGTTATTTTGTTTTC----------------------------------------------------------------ATAAGTTCAATTTAAATTTAACCATGGCTTGGCTTGTT---AATTA---TAAATTGACTATAT--------TAACTTTCAAATTTAAT--TAGGTTTATTCATTTCGCTAGTCCGTCCGATTCTTGAGTATGGATCACCTCTTTGGAGTCCTCA
droSec2 scaffold_42:144083-144332 - GCATATGTCCAGATCCGGATAAACACTCATCAACGTTTGTCATTCAACCGGTGAGTGCAACC-GGT-----------------------ACAACAAATTGAAACTAACTTTTTTCAGCCCCTGTTATTTTGTTTTC----------------------------------------------------------------ATAAGTTCAATTTAAATTTAACCATGGTTTGGCTTGTT---AATTA---TAAATTGACTATAT--------TAACTTTCAAATTTAAT--TAGGATTATTCATTTCGCTAGTCCGTCCGATTCTTGAGTATGGATCACCTCTTTGGAGTCCTCA
dm3 chr2L:22568531-22568705 - GCATAAGTCCAGATCCGGATAAACACTCATCAACCTTTGTCATTCAACCGGTAAGTGCAACC-GGT-----------------------ATAAAAAATTGAAACTAACTTGGTTCAGCCCCTGTTATTTTGTTTTC----------------------------------------------------------------ATAAGTTCAATATAAACTTAATCAATGCTTGGTTTGTT---AATTA---TATATTGACTATAT--------TAACT-----------------------------------------------------------------------------T
droEre2 scaffold_4845:711320-711551 + GCTTAAGTCCAGATCCGAGAAAACACTCATCAACATTTGTTATTCAACCAGTAAGTGCATCT-CATTACAAAATTGTATTTACTTAATAACAACAAATTAAAAATGACTTGCTA------------A-----------------------------CAGCGGGTGTGGTTCAGCTTTACTTTAAGCTTTACTTTA-----ATTACTTCAATTTAAACTTAATAATATGTTGGCTTATTCGTA--------------------------------------------------------------------------ATGATATTAATAAAATATTTAAATCTATT-AATTTTAT
droYak3 2L:21211526-21211674 + ATTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAGTCAATAAGGCCAGGGGTGGGCTTGGT---T-TTATAAAAAGGTGGCATATGGAATTTGATGAT--CCTTAATTGACTAATGCATTATTAATTTCGCTAGTACATCCGATTCTTGAGTATAGATCACC--TTTGGAGTTCGCT
droEug1 scf7180000405472:4890-4965 - TTTAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAATTTTATTTGTCTCTCTCGTTCGTCCGATCTTAGAGTATGGATCTTGCGTCTGGAACCCCCA
droBia1 scf7180000302512:130264-130402 - CATAATGTCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAACAAAGCCATGATTGTACTTGTG---T-TTATAAAGCGTTGGTCAAAAGAATTTGACGA-------------CCAAATTATTATTTACTTCCTTTGTCCGTCCTATTTTGGAATATTGTTCGTCGGTTTAGAGTCCACA
droTak1 scf7180000412788:7724-7849 - TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAGCCAGGGGTGCGCTTGGC---T-TTATTAAAA----------GGAATTTGATGAT--CCTTATATTACTAAGACCTTATTCAGCTCGCTCGTCCGGCCGATACTTGTGTATGGATCACCCGTCTGGAGTCCACA
droEle1 scf7180000490353:4888-5030 - ATTTTCTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATATTTAGTCCATGGTGAATAAACCCAGG-----GCTTGGA---T-TTATAAA--------------AATTTTATGAT--CCGTATGTCACAAAGACCTTATTTATTTCATTAGTTCGTCCAATCCTGGAGTATTGGTCACCACGTTGGAGTCCCGA
droRho1 scf7180000777575:8790-8948 - TATTATTT-------------------------------------------------------------------------------------------------------------------------TTTTTTC--------------------------------------------------------------------GTCCATGGTTAATAAAGCCAGAGGAGTGCTTGGA---T-TTATTAAAAGGTGGTCAAAAGAATTCGATGAT--CCTTATTTGACTAAAACTTTATTTATTTCGCTAGTCCGTACGATTCTGGAGTATGGGTCTCCCGTCTTGAGTCCACA
droFic1 scf7180000454138:26206-26360 + TTTCTTTTT-------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------CTTACCGCAATTCA---AAAGCCAAGGGTGTGCTTGAA---T-TTATAAAAAGGTGGTCAAAGGAATTTGACGAC--CCTTACATAACTAAAAATTTATTTATTTCACTTGTCCGTCCCATTCTTGAATATGAATCACCGGTCTGGAGTCCCTG
droKik1 scf7180000301574:12365-12468 + GCTTGGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTC----------AATGAATTCAATGAT--TT---TGTAACATAATCTTTATATACTTCACTTGTTCGTCCTATCTTAGAATATGGATCCTGCGTTTGGAGCCCTTA
droAna3 scaffold_13034:120256-120440 - AATAGA-------TCGAAATATAAACTCATG--------TCATTTTATCGA------------------------------------------------------------------------------------------------------------------------------------------------TCGTACT--TCAAATGGTTAATAAAGCTATAGGTGTGCTTGGT---T-TTATTATAAGATGGTCAAAAGAATTTAATGAC--CCGCACATAAA--GAACATTTTATATATCATTGGTCCGACCGATTCTTGAGTATGGATCGTGTGTCTGGAGTCCTCA
droBip1 scf7180000394817:16223-16372 - TATTTCCACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCATATAATGCTAAAGGTGTCCTTGGT---T-TGATGAAAAGGTGGTCAAAAGAATTTATCGAC--TCCTATATTACTAGAAGTTTATTTTTTTCATTGGACCGTCAGATATTAGAGTACAGTTCATGGGTCTGGAGACCTCA
dp5 Unknown_singleton_1990:115-248 - ATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGGCCATGGGCGTGCTTGGT---T-TTATAA-----TGGTCAAAGGAATTTGACGAC--CCCTATATAACAAAGACTCTGTATACCTCGCTTCTTCGTCCGATCTTAAAATACGGCTCCTGTCTATGGTGCCCTCA
droPer2 scaffold_136:65088-65213 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGGGCCATGGGTGTGCTTTGG---T-TTATAAATAGGTTTATAAATAAAT------------ATAAATAACAAAGACTCTCTATACCTCGCTTGTTCGTCCAATCTTAGAGTACGGCTCCTGTATACGGTGCCCTCA
droWil2 scf2_1100000002286:4254-4407 - GTTATGTTT-------------------------------------------------------------------------------------------------------------------------GACCCCAAAATTTTCATTTAATTTTC---------------------------------------AAATCTC--TTGAATTGTCAATAGAGCA------------------------------------TGAAGTCTTTGATGAA--CCTTACGTAACAAAGGTTTTATATACTTCGTTAGTTCACCCTACTCTAGAATATTGCTCGCCAGTGTGGAACCCTCA
droVir3 scaffold_12963:2401400-2401455 + GCATGCAGCCAGATCCTGAAAAGCATTCTTCAGCCTTTGTCATCCAACCGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:24235072-24235130 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCACTTCGCTTGTGCGTCCTATCTTAGAGTATTGCTCAGTTGTATGGTCTCCGCA
droGri2 scaffold_15126:2614627-2614713 - GAATGCAGCCAGATCCTGCCAAGCACTCTACAGCATTTGTCATACAACCGGTAAGTA--ACCTTGT-------------------AGCAGCCACAAAACAAAACAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCATAAGTCCAGATCCGGATAAACACTCATCAACGTTTGTCATTCAACCGGTGAGTGCAACC-GGT-----------------------ACAACAAATTGAAACTAACTTGTTTCAGCCCCTGTTATTTTGTTTTC----------------------------------------------------------------ATAAGTTCAATTTAAATTTAACCATGGCTTGGCTTGTT---AATTA---TAAATTGACTATAT--------TAACTTTCAAATTTAAT--TAGGTTTATTCATTTCGCTAGTCCGTCCGATTCTTGAGTATGGATCACCTCTTTGGAGTCCTCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................TGAGTATGGATCACCTCTTTGGA.......2311.00100000001000000000
.............TCCGGATAAACACTCATCAACGTT.............................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.....................................................................................................................................TTC----------------------------------------------------------------ATAAGTTCAATT..............................................................................................................................................1511.00100000000001000000
............................................................................................................................................................................................................................................................................................................CATTTCGCTAGTCCGTCCGATTCTTGA...........................2711.00100000001000000000
...............................................................................................................................................................................................................................................................................................................TTCGCTAGTCCGTCCGATTC...............................20101.0010000001000000000000
.........CAGATCCGGATAAACACTCATCAAC................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
...............................................................................................................................................................................................................................................................................................................TTCGCTAGTCCGTCCGAT.................................18101.0010000001000000000000
............................................................................................................................................................................................................................................................................................................CATTTCGCTAGTCCGTCC....................................1840.75300000300000000000
..............................................................................................................................................................................................................................................................................................................TTTCGCTAGTCCGTCCGATTCTTGA...........................2540.50200100000010000000
....................................................................................................................................................................................................................................................................................................................TAGTCCGTCCGATTCTTGAGTATGGA....................26160.44700000012004000000
.......................................................................................................................................................................................................................................................................................................TTATTCATTTCGCTAGTCCGTCCGA..................................2530.33100000001000000000
...................................................................................................................................................................................................................................................................................................................................TTGAGTATGGATCACCTCTTTA.........2230.33100000010000000000
........................................................................................................................................................................................................................................................................................................TATTCATTTCGCTAGTCCGTCCGA..................................2430.33100000010000000000
...............................................................................................................................................................................................................................................................................................................TTCGCTAGTCCGTCCGATTCTTGAGT.........................2640.25100000000001000000
............................................................................................................................................................................................................................................................................................................CATTTCGCTAGTCCGTCCGATTC...............................2340.25100000001000000000
.................................................................................................................................................................................................................................................................................................................CGCTAGTCCGTCCGATTCTTGAGG.........................2440.25100100000000000000
..............................................................................................................................................................................................................................................................................................................TTTCGCTAGTCCGTCCGATTCTTGAG..........................2640.25100000000001000000
...........................................................................................................................................................................................................................................................................................................TCATTTCGCTAGTCCGTCCGA..................................2140.25100000001000000000
............................................................................................................................................................................................................................................................................................................CATTTCGCTAGTCCGTCCGATTCT..............................2440.25100000001000000000
...............................................................................................................................................................................................................................................................................................................TTCGCTAGTCCGTCCGATTCT..............................2190.11100000000001000000
..............................................................................................................................................................................................................................................................................................................TTTCGCTAGTCCGTCCG...................................1790.11100000000001000000
..................................................................................................................................................................................................................................................................................................................GCTAGTCCGTCCGATTCT..............................18100.10100000000001000000
..............................................................................................................................................................................................................................................................................................................TTTCGCTAGTCCGTC.....................................15100.10100000000001000000
................................................................................................................................................................................................................................................................................................................TCGCTAGTCCGTCCGATTC...............................19100.10100000000001000000
...................................................................................................................................................................................................................................................................................................................CTAGTCCGTCCGATTC...............................16110.09100000000001000000
............................................................................................................................TATTTTGTTTTC----------------------------------------------------------------ATA.......................................................................................................................................................15110.09100000001000000000
................................................................................................................................................................................................................................................................................................................................TTCTTGAGTATGGATCACCT..............20140.07100000000001000000
.............................................................................................................................................................................................................................................................................................................................CGATTCTTGAGTATGGATC..................19150.07100000000001000000
....................................................................................................................................................................................................................................................................................................................TAGTCCGTCCGATTCTTGAGTATGGAT...................27150.07100000000001000000
......................................................................................................................................................................................................................................................................................................................GTCCGTCCGATTCTTGAGTATGGA....................24160.06100000010000000000
.....................................................................................................................................................................................................................................................................................................................AGTCCGTCCGATTCTTGAGTATGGA....................25160.06100010000000000000
....................................................................................................................................................................................................................................................................................................................TAGTCCGTCCGATTCTTGAGTATGGG....................26160.06100000010000000000
....................................................................................................................................................................................................................................................................................................................TAGTCCGTCCGATTCTTG............................18200.05100000000001000000
droSec2
GCATATGTCCAGATCCGGATAAACACTCATCAACGTTTGTCATTCAACCGGTGAGTGCAACC-GGT-----------------------ACAACAAATTGAAACTAACTTTTTTCAGCCCCTGTTATTTTGTTTTC----------------------------------------------------------------ATAAGTTCAATTTAAATTTAACCATGGTTTGGCTTGTT---AATTA---TAAATTGACTATAT--------TAACTTTCAAATTTAAT--TAGGATTATTCATTTCGCTAGTCCGTCCGATTCTTGAGTATGGATCACCTCTTTGGAGTCCTCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................TCATTTCGCTAGTCCGTCCGATTC...............................2440.5021010
............................................................................................................................................................................................................................................................................................................CATTTCGCTAGTCCGTCCGATT................................2240.2511000
.............................................................................................................................................................................................................................................................................................................................CGATTCTTGAGTATGGATC..................19200.0511000
dm3
GCATAAGTCCAGATCCGGATAAACACTCATCAACCTTTGTCATTCAACCGGTAAGTGCAACC-GGT-----------------------ATAAAAAATTGAAACTAACTTGGTTCAGCCCCTGTTATTTTGTTTTC----------------------------------------------------------------ATAAGTTCAATATAAACTTAATCAATGCTTGGTTTGTT---AATTA---TATATTGACTATAT--------TAACT-----------------------------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........CAGATCCGGATAAACACTC......................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCCAGATCCGGATAAACACTCATCAACC...............................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCCGGATAAACACTCATCAACCTTTGT..........................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAAACACTCATCAACCTTTGTCAT.......................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAGATCCGGATAAACACTCATCAACCTT.............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAGATCCGGATAAACACTCATCAACC...............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TAAGTCCAGATCCGGATAAACACTC......................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ACCTTTGTCATTCAACCGGTAAGTGC........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TTGTCATTCAACCGGTAAGTGCAACC-...................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCCGGATAAACACTCATC...................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AATTGAAACTAACTTGGT.................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAAACACTCATCAACCTTTGTCATT......................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CACTCATCAACCTTTGTCATTCAA...................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCCGGATAAACACTCATCAACCTTTG...........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CAACCGGTAAGTGCAACC-GGT-----------------------ATAA.....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCCGGATAAACACTCATCAACCTTTGC..........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CCAGATCCGGATAAACACTCATCAACC...............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................TCAATGCTTGGTTTGTA---GG...............................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCTTAAGTCCAGATCCGAGAAAACACTCATCAACATTTGTTATTCAACCAGTAAGTGCATCT-CATTACAAAATTGTATTTACTTAATAACAACAAATTAAAAATGACTTGCTA------------A-----------------------------CAGCGGGTGTGGTTCAGCTTTACTTTAAGCTTTACTTTA-----ATTACTTCAATTTAAACTTAATAATATGTTGGCTTATTCGTA--------------------------------------------------------------------------ATGATATTAATAAAATATTTAAATCTATT-AATTTTATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ATTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAGTCAATAAGGCCAGGGGTGGGCTTGGT---T-TTATAAAAAGGTGGCATATGGAATTTGATGAT--CCTTAATTGACTAATGCATTATTAATTTCGCTAGTACATCCGATTCTTGAGTATAGATCACC--TTTGGAGTTCGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TTTAATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTAATTTTATTTGTCTCTCTCGTTCGTCCGATCTTAGAGTATGGATCTTGCGTCTGGAACCCCCASizeHit CountTotal NormTotal
No Reads
droBia1
CATAATGTCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAACAAAGCCATGATTGTACTTGTG---T-TTATAAAGCGTTGGTCAAAAGAATTTGACGA-------------CCAAATTATTATTTACTTCCTTTGTCCGTCCTATTTTGGAATATTGTTCGTCGGTTTAGAGTCCACASizeHit CountTotal NormTotal
No Reads
droTak1
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAGCCAGGGGTGCGCTTGGC---T-TTATTAAAA----------GGAATTTGATGAT--CCTTATATTACTAAGACCTTATTCAGCTCGCTCGTCCGGCCGATACTTGTGTATGGATCACCCGTCTGGAGTCCACASizeHit CountTotal NormTotal
No Reads
droEle1
ATTTTCTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATATTTAGTCCATGGTGAATAAACCCAGG-----GCTTGGA---T-TTATAAA--------------AATTTTATGAT--CCGTATGTCACAAAGACCTTATTTATTTCATTAGTTCGTCCAATCCTGGAGTATTGGTCACCACGTTGGAGTCCCGASizeHit CountTotal NormTotal
No Reads
droRho1
TATTATTT-------------------------------------------------------------------------------------------------------------------------TTTTTTC--------------------------------------------------------------------GTCCATGGTTAATAAAGCCAGAGGAGTGCTTGGA---T-TTATTAAAAGGTGGTCAAAAGAATTCGATGAT--CCTTATTTGACTAAAACTTTATTTATTTCGCTAGTCCGTACGATTCTGGAGTATGGGTCTCCCGTCTTGAGTCCACASizeHit CountTotal NormTotal
No Reads
droFic1
TTTCTTTTT-------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------CTTACCGCAATTCA---AAAGCCAAGGGTGTGCTTGAA---T-TTATAAAAAGGTGGTCAAAGGAATTTGACGAC--CCTTACATAACTAAAAATTTATTTATTTCACTTGTCCGTCCCATTCTTGAATATGAATCACCGGTCTGGAGTCCCTGSizeHit CountTotal NormTotal
No Reads
droKik1
GCTTGGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTC----------AATGAATTCAATGAT--TT---TGTAACATAATCTTTATATACTTCACTTGTTCGTCCTATCTTAGAATATGGATCCTGCGTTTGGAGCCCTTASizeHit CountTotal NormTotal
No Reads
droAna3
AATAGA-------TCGAAATATAAACTCATG--------TCATTTTATCGA------------------------------------------------------------------------------------------------------------------------------------------------TCGTACT--TCAAATGGTTAATAAAGCTATAGGTGTGCTTGGT---T-TTATTATAAGATGGTCAAAAGAATTTAATGAC--CCGCACATAAA--GAACATTTTATATATCATTGGTCCGACCGATTCTTGAGTATGGATCGTGTGTCTGGAGTCCTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................AAGAATTTAATGAC--CCGCACATAAA--................................................................2511.001010000
..................................................................................................................................................................................................................................................................CAAAAGAATTTAATGAC--CCGCACA......................................................................24110.091010000
droBip1
TATTTCCACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCATATAATGCTAAAGGTGTCCTTGGT---T-TGATGAAAAGGTGGTCAAAAGAATTTATCGAC--TCCTATATTACTAGAAGTTTATTTTTTTCATTGGACCGTCAGATATTAGAGTACAGTTCATGGGTCTGGAGACCTCASizeHit CountTotal NormTotal
No Reads
dp5
ATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAGGCCATGGGCGTGCTTGGT---T-TTATAA-----TGGTCAAAGGAATTTGACGAC--CCCTATATAACAAAGACTCTGTATACCTCGCTTCTTCGTCCGATCTTAAAATACGGCTCCTGTCTATGGTGCCCTCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................TATACCTCGCTTCTTCGTCCGATC................................2461.67100700001200
...........................................................................................................................................................................................................................................GGT---T-TTATAA-----TGGTCAAAGGAATT......................................................................................2411.0010100000000
......................................................................................................................................................................................................................................................................................................TCTGTATACCTCGCTTCTTCGTCCGA..................................2611.0010100000000
..........................................................................................................................................................................................................................................................................................................TATACCTCGCTTCTTCGTCCGA..................................2260.8350300000200
..........................................................................................................................................................................................................................................................................................................TATACCTCGCTTCTTCGTCCGATCTT..............................2650.6030000000030
........................................................................................................................................................................................................................TAAGGCCATGGGCGTGCTTGGT---.................................................................................................................2230.3310000100000
.........................................................................................................................................................................................................................AAGGCCATGGGCGTGCTTGGT---.................................................................................................................2130.3310100000000
..........................................................................................................................................................................................................................................................................................................TATACCTCGCTTCTTCGTCCGATCTTAA............................2830.3310100000000
..........................................................................................................................................................................................................................................................................................................TATACCTCGCTTCTTCGTCCGATCTTA.............................2750.2010100000000
...........................................................................................................................................................................................................................................................................TTGACGAC--CCCTATATAACAAAGACT...........................................................26200.2040200000200
..........................................................................................................................................................................................................................................................................................................TATACCTCGCTTCTTCGTCCGAT.................................2360.1710100000000
...........................................................................................................................................................................................................................................................................................................................TCCGATCTTAAAATACGGCTCCTG...............2480.1310100000000
..........................................................................................................................................................................................................................................................................................................TATACCTCGCTTCTTCGTCCGATCC...............................2590.1110010000000
............................................................................................................................................................................................................................................................................TGACGAC--CCCTATATAACAAAGACTC..........................................................26200.1020000000200
........................................................................................................................................................................................................................TAAGGCCATGGGCGTGCTTGG.....................................................................................................................21200.1020000020000
..................................................................................................................................................................................................................................................................CAAAGGAATTTGACGAC--CCC..........................................................................20200.0510100000000
..........................................................................................................................................................................................................................................................................TTTGACGAC--CCCTATATAACAAAGAC............................................................26200.0510100000000
....................................................................................................................................................................................................................................................................AAGGAATTTGACGAC--CCC..........................................................................18200.0510000000010
..........................................................................................................................................................................................................................AGGCCATGGGCGTGCTTGG.....................................................................................................................19200.0510100000000
droPer2
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGGGCCATGGGTGTGCTTTGG---T-TTATAAATAGGTTTATAAATAAAT------------ATAAATAACAAAGACTCTCTATACCTCGCTTGTTCGTCCAATCTTAGAGTACGGCTCCTGTATACGGTGCCCTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................TAACAAAGACTCTCTATACCT.................................................21200.102200000
..............................................................................................................................................................................................................................................................................................ACAAAGACTCTCTATACCTCG...............................................21200.102020000
.........................................................................................................................................................................................................................................................................................................CTATACCTCGCTTGTTCGTC.....................................20200.051000001
...............................................................................................................................................................................................................................................................................................CAAAGACTCTCTATACCTCGCTTGTT.........................................26200.051010000
.............................................................................................................................................................................................................................................................................................AACAAAGACTCTCTATACCT.................................................20200.051010000
...........................................................................................................................................................................................................................................................................................ATAACAAAGACTCTCTATACCT.................................................22200.051100000
droWil2
GTTATGTTT-------------------------------------------------------------------------------------------------------------------------GACCCCAAAATTTTCATTTAATTTTC---------------------------------------AAATCTC--TTGAATTGTCAATAGAGCA------------------------------------TGAAGTCTTTGATGAA--CCTTACGTAACAAAGGTTTTATATACTTCGTTAGTTCACCCTACTCTAGAATATTGCTCGCCAGTGTGGAACCCTCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................AGAATATTGCTCGCCAGTGTGGAAC.....25200.20440000
...........................................................................................................................................................................................................................................................................................................................CCCTACTCTAGAATATTGCTCGCC...............24200.15330000
.................................................................................................................................................................................................................................................................................................................CGTTAGTTCACCCTACTCTAGA...........................22130.08101000
........................................................................................................................................................................................................................................................................................................................................TATTGCTCGCCAGTGTGGAACCCTCA26200.05100100
..........................................................................................................................................................................................................................................................................................................................................TTGCTCGCCAGTGTGGAACCC...21200.05100010
.............................................................................................................................................................................................................................................................................................................................................CTCGCCAGTGTGGAACCCTCA21200.05101000
........................................................................................................................................................................................................................................................................................................................................TATTGCTCGCCAGTGTGGAACC....22200.05101000
....................................................................................................................................................................................................................................................................................................................................AGAATATTGCTCGCCAGTGTGGAA......24200.05101000
droVir3
GCATGCAGCCAGATCCTGAAAAGCATTCTTCAGCCTTTGTCATCCAACCGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................TTCAGCCTTTGTCATCCAACC.................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCACTTCGCTTGTGCGTCCTATCTTAGAGTATTGCTCAGTTGTATGGTCTCCGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................TCTTAGAGTATTGCTCAGTTGTATGG........26150.477520000
...................................................................................................................................................................................................................................................................................................................................TAGAGTATTGCTCAGTTGTATGGTC......25170.244120001
..................................................................................................................................................................................................................................................................................................................................TTAGAGTATTGCTCAGTTGTATGG........24160.132200000
...................................................................................................................................................................................................................................................................................................................................TAGAGTATTGCTCAGTTGTATGGTCT.....26140.071000001
................................................................................................................................................................................................................................................................................................................................TCTTAGAGTATTGCTCAGTTGTATG.........25150.071100000
................................................................................................................................................................................................................................................................................................................................TCTTAGAGTATTGCTCAGTTGTATGGC.......27150.071100000
................................................................................................................................................................................................................................................................................................................................TCTTAGAGTATTGCTCAGTTGTAT..........24160.061100000
...................................................................................................................................................................................................................................................................................................................................TAGAGTATTGCTCAGTTGTATGGT.......24170.061100000
...................................................................................................................................................................................................................................................................................................................................TAGAGTATTGCTCAGTTGTATGG........23170.061100000
..........................................................................................................................................................................................................................................................................................................TTCACTTCGCTTGTGCGTCCTATCT...............................25180.061100000
droGri2
GAATGCAGCCAGATCCTGCCAAGCACTCTACAGCATTTGTCATACAACCGGTAAGTA--ACCTTGT-------------------AGCAGCCACAAAACAAAACAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.AATGCAGCCAGATCCTGCCAAGCACT.......................................................................................................................................................................................................................................................................................................................................2611.00110
.........................CTCTACAGCATTTGTCATACA....................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/19/2015 at 12:48 AM