ID:

dsi_6658

Coordinate:

3l:11815340-11815489 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTATTTTTTATTTTGGCCATTATCACACGTTTAATTAACATAGGAAAGTCCGTATTTATACTGTTTTATAATCATTGATACAGAATGGTTGCAACTGATTTTAAATTAAATGATCCTTATAGTTTGTGGAATAAGAACCGCCAAAAATATTGACCAATCCACTAAGAATATTCATAATTTCTAACCTTTCCATTTGCAGCCACCAAAGTCACCGGCACCGTCAAGTGGTTCAACGTGAAGAGCGGCTAC ************************************************...........((((((((.((((((((..((......))..))).))))).)))).....((.((..(((..((.((((........)))).))..)))..)).))........((((..........)))).............))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	M053 female body	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
.................................................................................CAGAATGGTTGGAAATCATT.....................................................................................................................................................	20	3	20	2.25	45	31	10	4	0	0	0	0
.............................................................................................................................................................................................................AAAGCCACCGGCACCGTCAAGTGGTT...................	26	1	1	1.00	1	0	0	1	0	0	0	0
............................................GAAAGTCCGTATTTATACTGTT........................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................TCAAGTGGTTCAACGTGAAGA........	21	0	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................AATTGGTTCAACGTGAA..........	17	1	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................CACCAAATTCTCCGGCACGGT............................	21	3	2	0.50	1	0	0	0	0	0	1	0
..........................................................................................................................GTTTGTGGAATGAGAAC...............................................................................................................	17	1	2	0.50	1	0	0	0	0	0	0	1
............................................................................................................................................................................................................................GTCAAGTCGTTCGATGTGAA..........	20	3	9	0.22	2	0	0	0	0	0	2	0
................................................................................................................................................................................................................................AGTGATTCAACGTGA...........	15	1	6	0.17	1	0	0	0	1	0	0	0
..................................................................................................................................................................................TTTCTTATCGTTCCATTTGCAG..................................................	22	3	7	0.14	1	0	0	0	0	0	1	0
...................................................................................................................................................................................TTCAAATCGTTCCATTTGCAG..................................................	21	3	10	0.10	1	0	0	0	0	0	0	1
.........................................................................................................................................................ACCAATCCATTAAGA..................................................................................	15	1	12	0.08	1	0	0	0	0	1	0	0
.........................................................................................TGGCAACGGACTTTAAATTA.............................................................................................................................................	20	3	19	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

AAATAAAAAATAAAACCGGTAATAGTGTGCAAATTAATTGTATCCTTTCAGGCATAAATATGACAAAATATTAGTAACTATGTCTTACCAACGTTGACTAAAATTTAATTTACTAGGAATATCAAACACCTTATTCTTGGCGGTTTTTATAACTGGTTAGGTGATTCTTATAAGTATTAAAGATTGGAAAGGTAAACGTCGGTGGTTTCAGTGGCCGTGGCAGTTCACCAAGTTGCACTTCTCGCCGATG ************************************************...........((((((((.((((((((..((......))..))).))))).)))).....((.((..(((..((.((((........)))).))..)))..)).))........((((..........)))).............))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
........................................................................................................................................................................................................................................TTGCACTTCTCGCCGATG	18	0	1	2.00	2	2	0	0	0	0
...............................................TCAGGCATAAGCATGA...........................................................................................................................................................................................	16	2	20	0.25	5	0	5	0	0	0
............................................................................................................................................................................................................................CAGTTCAGCAAGCTACACTT..........	20	3	9	0.11	1	0	0	1	0	0
...............................................TCAGGCATAAGCATGAC..........................................................................................................................................................................................	17	2	13	0.08	1	0	1	0	0	0
.......................................................................................................................................................ATTGGTTAGGTAATTCTT.................................................................................	18	2	17	0.06	1	0	0	0	1	0
...................................................................................................................................................................................................................GGGCCATGGCAGTTC........................	15	2	20	0.05	1	0	0	1	0	0
............................................................................ACCATGTCTTACTAAGGT............................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 10:38 AM