ID:

dsi_6634

 Coordinate:

4:455823-455972 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.8 -6.8 -6.8

Flybase annnotation

five_prime_UTR [4_455645_456089_-]; exon [4_454832_456089_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
AGTGGGAACGAGACGAAAATATACACACATTTTCGAGAAACTGTGATCATGTATTTACTTTTACCGAAAGTATTTTTTGCTTATTAAAATTAATTGCCGTAAACGAATTCCCGAAAAAAAGGTCAATGCAATCAACAAACTCGTGCAAATTGAACCTACCTAACAAGTAATGAATGTGGATGTGAACATTTTTACAGAGATTCTAAGCGTACATATGTTATATGCCAACGTTCATAAGTATGTACATATA
*********************************************************************************************..........................(((((((((((.............))))..))).)))).......................********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR902009
testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
......................ACACACATTTTCGAGAAACTG............................................................................................................................................................................................................... 21 0 1 12.00 12 0 0 8 0 2 2 0 0 0 0 0
............................................................................................................................................................TACCTAACAAGTAATGAATGTGGA...................................................................... 24 0 1 10.00 10 4 3 0 1 0 0 2 0 0 0 0
..........................................................................................................................................................................................CATTTTTACAGAGATTCTAAGCGTAC...................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..............................TTTCGAGAAACTGTGATCATGTATT................................................................................................................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.........................CACATTTTCGAGAAACTG............................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0
.............................TTTTCGAGAAACTGTGATCATGTATT................................................................................................................................................................................................... 26 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TACAGAGATTCTAAGCGTACA..................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GTAATGAATGTGGATGTGAA................................................................ 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAGTAATGAATGTGGATGTGA................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0
.................................................................................................................................................................................................ACAGAGATTCTAAGCGTACA..................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATGTTATATGCCAACGTTCATAAGTA.......... 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
.....................................................................................................AATGAATTCCTGATAAAAAGG................................................................................................................................ 21 3 5 1.40 7 0 0 4 0 0 1 0 2 0 0 0
.....................................................................................................AATGAATTCCTGATAAAAAG................................................................................................................................. 20 3 20 1.15 23 0 0 0 0 4 0 0 19 0 0 0
............................................................................................................................................................................................TTTTTACAGAGATTCTAAGCGTACA..................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................TTCGAGAAACTGTGATCATGTATTTACT............................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................ACCTACCTAACAAGTAATGAATGTGGA...................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGTGAACATTTTTACAGAGATTCTAAG........................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGTGGATGTGAACATTTTTACAGAGA.................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TAATGAATGTGGATGTGAACATT............................................................ 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
......................ACACACATTTTCGAGAAACGG............................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................TTTTCGAGAAACTGTGATCATG....................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGTGAACATTTTTACAGAGATTCTAAGCG......................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................CACACATTTTCGAGAAACTGG.............................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..TGGGAACGAGACGAAAATATACACACAT............................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
............................ATTTTCGAGAAACTGTGATC.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AATGAATGTGGATGTGAACAT............................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................ATTTTCGAGAAACTGTGATCATGT...................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................TTGCCGTAAACGAATTCCCGAAAAAAAGG................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................TTTTCGAGAAACTGTGATCATGTATTT.................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................ATTTTCGAGAAACTGTGATCATGTATT................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGTGGATGTGAACATTTTTACAGAGAAAA............................................... 29 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................GCCGTAAACGAATTCCCGAA....................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TAACAAGTAATGAATGTGGATGTGAACA.............................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................CACACATTTTCGAGAAACTGT.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTTACAGAGATTCTAAGCGT........................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TGTGGATGTGAACATTTTTACAGAGAA................................................. 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................CAAACTCGTGCAAATTGAACC.............................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TACATATGTTATATGCCAACGTT.................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................TAATTGCCGTAAACGAATTCCCGA........................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AACTCTAAGCGTACATATGGT............................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................ATGAATGTGGATCTGA................................................................. 16 1 11 0.18 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................AAATGAATTCCTGATAAAAAG................................................................................................................................. 21 3 12 0.17 2 0 0 0 0 0 0 0 2 0 0 0
........................................................................................................GAATTCCTGATAAAAAGG................................................................................................................................ 18 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
.................TATATACATACATTTTCGATAAA.................................................................................................................................................................................................................. 23 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
......AACGAGACGCAAATAT.................................................................................................................................................................................................................................... 16 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCACCCTTGCTCTGCTTTTATATGTGTGTAAAAGCTCTTTGACACTAGTACATAAATGAAAATGGCTTTCATAAAAAACGAATAATTTTAATTAACGGCATTTGCTTAAGGGCTTTTTTTCCAGTTACGTTAGTTGTTTGAGCACGTTTAACTTGGATGGATTGTTCATTACTTACACCTACACTTGTAAAAATGTCTCTAAGATTCGCATGTATACAATATACGGTTGCAAGTATTCATACATGTATAT
**********************************************************************..........................(((((((((((.............))))..))).)))).......................********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 GSM343915
embryo
 M053
female body
 M024
male body
.................................................................................................................TTTTTTTTCAGTTACGTTA...................................................................................................................... 19 1 3 2.33 7 0 0 0 0 7 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GTATACAATATACGGTTGCAAGTAT.............. 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTCTCTAAGATTCGCATGTA.................................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCCAGTTACGTTAGTTGTTTG.............................................................................................................. 21 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................TGCAAGTATTCATACATGTAT.. 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................TTGTAAAAATGTCTCTAAGAT............................................. 21 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................TGAGCACGTTTAACTTGGATG........................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TGAAAATGGCTTTCATAAAAA............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGTAAAAATGTCTCTAAGATTCGC......................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................AAGTTGTTTGAGCACGTTTAAC.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................AGCTCTTTGACACTAGTACATAAATGA............................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................GTAAAAGCTCTTTGACACTAGTACATAA................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TTGAGCACGTTTAACTTGGA............................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................ATACAATATACGGTTGCAAGTAT.............. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................GGCTTTTTTTCCAGTTACGTT....................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................TGTGTAAAAGCTCTTTGACAC............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.CACCCTTGCTCTGCTTTTATA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CAATATACGGTTGCAAGTAT.............. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TACTGTTGCAAGTATTCATAC........ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACGGTTGCAAGTATTCATACATGT.... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ATACGGTTGCAAGTATTCATA......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................AGTGAAAATGGCTGTCATAAAAAACA.......................................................................................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................CTCTTTGACACTAGTACATAA................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................TACAATATACGGTTGCAAGTA............... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TTGAGCACGTTTAACTTGGAT............................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGGGCTTTTTTTTCCAGTTACGTTAGT.................................................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CACGTTTAACTTGGATGGATT....................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................TTGTAAAAATGTCTCTAAGATTCGCATGT..................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................GTCTCTAAGATTCGCATG...................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ATACGGTTGCAAGTATTCATACATGT.... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGGTTGCAAGTATTCATACAT...... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CAATATACGGTTGCAAGTATT............. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................TGGCTTTCGTGGAAAACGAAT....................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.................TTATATCTGTGTCAAGGCTCT.................................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TACGGTTTCTAGTAGTCATA......... 20 3 11 0.18 2 0 0 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................TGTTTGAGCACTATTAAC.................................................................................................. 18 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTTTTCAGTTACGTTA...................................................................................................................... 17 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TGTTTGAGCACTTGGAACT................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................TTGCTTACGGGCTGTATTT.................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:455773-456022 - dsi_6634 AGTGGGAACGAGACGAAAATATACACACATTTTCGAGAAACTGTGAT-C-------ATGT--ATTTACTTTTACCGAA-----AGTAT-TTT---TTGCTTAT------------------------------------TAAAATT---------------------AATTGCCGTAAACGAATTCCCGAAA-----------------------------------------------------AA---------------------AAGGTCAATG-CAATCAACAAACTCGTGCAAATTGAACCTACCT-AACAAGTAATGAATGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--GAGATTCTAAGCGTA---CAT--------------------A----------------------------------TGT---TATATGCCAACGTTCAT---------AAGTATGTAC----------ATA---------TA
droSec2 scaffold_30:368861-369108 - AGTGGGAACGAGACGAAAATATACACACATTTTCGAGAAACTGTGAT-C-------ATGT--ATTTACTTTTACCGAA-----AGTAT-TTT---TTGCTTAT------------------------------------TAAAATT---------------------AATTGCCGTAAACGAATTCCCAAAA-----------------------------------------------------AAA--------------------AAGGTCAATG-CAATCAACAAACTCGTGCAAATTGAAC-----T-AATAAGTAATGAATGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--GAGATTCTAAGCGTA---CAT--------------------A----------------------------------TGTAGATACTTGCCAACGTCCAT---------AAGTATGTAC----------ATA---------T-
dm3 chr4:646342-646589 - AGTGCGACCGAGACGAAAATATATACACATTTTCGAGGAACTGTGAT-C-------ATTT--ATTTACTT-TACCGAA-----AGAAATTTT---TTGTTTCT------------------------------------TTAAATT---------------------AAGTGCCGTAAACGAAATCCCGAAA-----------------------------------------------------AT---------------------AAGATCAATG-CAATCAACAAACTCGTGCAGATTTAACC----T-AATAAGTAATG-GTGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--GAGATTCTGAGCCTA---CA------------------------------------------------TA--CATATGTAGATACTTGCCAACGTTCAT-------------TAGTAT----------GTA---------TA
droEre2 scaffold_4512:633387-633642 + AGTGCGAACGAGACGAAAATATGTACAAATTTTCGAAGAACTGTGAT-C-------ATTT--ATTTACTTTTACCGAC-----AGTTT-TTTATTTTGTTTTC------------------------------------TTAAATT---------------------AATCAGCGTAAACGAATTCACGAAT-----------------------------------------------------CT---------------------AAGATCAATGGTGCTTAACAAACTCGTGTACATTGTACATACATAAATAACTAATG-GTGTG--ATGTGAACATTT-TT--------------------------------------------------ACA--AAGATTCTGAGCAT----CAT----------------------------------------------------------AAATACATGCCAGCAA-------------ACATATGTAC----------ATACATACGTCATA
droYak3 4:700204-700433 - CGTGCGAACGAGACAAAAATATGTACAAATCTTCGAGGAACTGTGAT-C-------ATTT--GTTTACTTTTACCGAA-----AGCTT-TTTATTTTATTATC------------------------------------CTATATT---------------------AATCACCGTAAACGAATTCCCGAAT-----------------------------------------------------CT---------------------AAGATCAATGGTGCTCAACAAACTCGTGTACAGTGTACATACATAAAAAAGTAATG-GTGTGG------------------------------------------------------------------------AGATTCTGAGCATT---CAT----------------------------------------------------------AGATACATGCCAACAA-------------ACATATGTAC----------ATA---------T-
droEug1 scf7180000408984:546375-546476 + ACTGGGAACGAGACGAAAAGATGTACAAATTTTCGTGGAACCGTGAT-C-------ATTT--TTGTA--------------------T-TTTGTGTTGTTTCC------------------------------------TTATTTG---------------------ATTACTTATAAACCAATTTCCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301495:527038-527248 - AGAGCGAACGAGACGAAAATATGTACAAATTTTCGACAAACTGTGAT-C-------ATTT--ATTTACATTTACCGAA-----AGTAT-TTTGAGATGCTTCC------------------------------------TTAAATT---------------------AA---CAAAAAACAAATTCCTGAAA-----------------------------------------------------CTTAAAGCAAG---CCAGAT---------------GTTCACAAAACTTAAGTACA-----------TAACAAATTACACAGTGTGA-ATGTGAA--TTC-CT--------------------------------------------------ACC--AAAATTCTGTGCAAA---GAT----------------------------------------------------------------------------------------------TGG------------A---------T-
droTak1 scf7180000414052:13459-13669 - AGTGCGAACGAGACGAAAATATGTACAAATTTTCGTGGAACTGTGAT-C-------ATTT--ATTTACTTTTACCGAA-----AGTAT-GTTGTGTTGTTTCC------------------------------------TTAAATT---------------------AATCCAC-AAAAAAAATTTCTGAAC-----------------------------------------------------CTGAAAGCAAA----CAGAT---------------GCTCACAGAACTTATGTACA-----------TAATTAAGTACATAGTGTGG-ATGTAAAGACTT-T---------------------------------------------------ACC--AAAATTCTGTACTCC---G-------------------------------------------------------------------------------------------------------------ATT--------GT-
droEle1 scf7180000491238:595247-595459 + AGTGCGAACGAGACGAAAATATGTACAACTTTTCGGGGAACTCTGAT-C-------GTTT--ATTTACTTTTCCCGAA-----AGTGT-TTTGTGTTGTTTCC------------------------------------TTAAATT---------------------AATCGAC-AAAACAAATTCCTGAAC-----------------------------------------------------CTTAAAGCCAA----CGGAT---------------GCTCACCGAACTCATGTGCA-----------CAAACAAGTACAAAGTGTGG-ACGTAAACATTT-T---------------------------------------------------ACAACAAAGTTTTGT------------------------------------------------------------------------------------------------------GCGTGC----------ATA---------TA
droRho1 scf7180000776189:7436-7656 - AGTGCGAACGAGACGAAAATATGTACAAATTTTCGAGGAACTCTGAT-C-------ATTT--ATTTACTTTTACCGAG-----AGCAT-TTTGTGTTGTTTCT------------------------------------TAAAAAT---------------------TATTCAC-AAACAACATTTCTGAGT-----------------------------------------------------CTGAACGTTAA----CAGAT---------------GCTCACAGAACTCATGTACA-----------CAATCTAGTACAAAGTGTGG-ATGTGAACATTT-T---------------------------------------------------ACAACAAATTTCTGTGC-------------------------------------------------------------------------------------AT---------AAATGTTTAA----------ATA---------TA
droFic1 scf7180000454040:238224-238441 - AGTGTAAACGAGACGGAAATATGCAAACCTTTTTGAGAAACAGTGAT-C-------ATTT--ATTTACTTTTACCAAA-----AGTAG-TTTGTATAGTTGTA------------------------------------TTAAATT---------------------A-TTAAT-AAAAAGAATTCCTGGA------------------------------------------------------TTGAAAGAGAG----GAAATGATAAAATAGATCGCTCTAAACAA--------------------------------AACAATGTGG-ATGTAAACATTT-TT--------------------------------------------------TTA--TAGATAATAT-------------------------------------------------------------------------------GTACATATAC---------GTTTATGGAC----------GTA---------TG
droKik1 scf7180000302809:602568-602703 - TGTAAGTAATAA-----------------TAATCGTAGTAATCGT-------------------------------------------------------------ATTACGCAAATAATAGTGATCTTAGGTGTGTAGTAAAAAT---------------------TATT------------------------------------------------------------------------------------------------------------------TGAAATATGCATA--ATTT---------------------------------------------------------------------------------------------ACA-----------AGTATT---CTT----------------------------------------------------------TGTCAAATGTTATCCTTTAT---------ATGTGTGTAC----------ATG---------TA
droAna3 scaffold_12911:471373-471415 + TAAGGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATAC------------------------------------------------------------T-----------------------------------------------------------------------------GTGCCTACATACAT---------ACATATGTAC----------ATA---------CA
droBip1 scf7180000395182:2264-2363 + AATTGAAATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGAAAAT------------------------------------------------------------------------------------------------ATCGAATATATATATATAAATATATATGTATATGCATCATAAATAAGGTAATTTATAAA-TAATTC------------------------------------------------------------------------------------------------------ATTTCATAT----------ACA---------TA
dp5 Unknown_group_497:3429-3680 + TGTG--AAAGAGACAAAAATATGTACAA-CTTTCGATAAACTGTGAT-CATACATCATTT--ATTTACTTATACTAAAACAACAGTTT-TCTGTGTTGTTTTC------------------------------------CTGAATACATATGTTCATATGTACATGC-ATCCGA-AATATCAACTCTTGAAA-----------------------------------------------------CTGGAAGAAAA----CAGAT---------------GCTCTAGCAAC----------------------------------GTGTGGAATGTGTG--TTC-TC--------------------------------------------------G--------------------TAAA------T--------------ATGTATATATATGTACTGATATATACAT---------------------------------------AAATATGTATATGTGTGAATTTA---------CA
droPer2 scaffold_42:482657-482908 + TGTG--AAAGAGACAAAAATATGTACAA-CTTTCGATAAACTGTGAT-CATTCATCATTT--ATTTACTTATACTAAAACAACAGTTT-TCTGTGTTGTTTTC------------------------------------CTGAATACATATGTTCATATGTACATGC-ATCCGA-AATATCAACTCTTGAAA-----------------------------------------------------CTGGAAGAAAA----CAGAT---------------GCTCTAGCAAC----------------------------------GTGTGGAATGTGTG--TTC-TC--------------------------------------------------G--------------------TAAA------T--------------ATGTATATATATGTACTGATATATACAT---------------------------------------AAATATGTATATGTGTGAATTTA---------CA
droWil2 scf2_1100000004909:11985235-11985369 - AACAAAGTTTC-----------ACAAAC---------------------------------------------------------------------AATTCCCAAAAAAGGTCAAAATTAAAACTCTTAGA----------------------------------------------------------AG-----------------------------------------------------AGGAAAACGAA--------------------------------------------TTGA-------------AGAAATG-ATTTTG-ATATATGTAT----------------GTAACT--------------------------------------------------ATA---TAT----------------------------------------------------------AC----ATACATATATATAC---------AAATATGTAC----------ATA---------TA
droVir3 scaffold_12970:9664136-9664294 + TTTATTATA--------------------------------------------------------------------------AATAT-TGG---CTGAGTAT------------------------------------TCAAATT---------------------AAGTA-----AAAAAAT-CAGGAAA-----------------------------------------------------AA----------------------------------AATGACAAATATTCATG--ATTTAT---------------------------------------TT--------------------------------------------------A---------------TATG---CTTGATTGTATGTATTTGTGTGCATATGAACATATGTAAGCATGTATGTTT--------------------GAATGTATGT---------ATGAAGGTAT----------GTA---------TA
droMoj3 scaffold_6482:2218131-2218335 - TTTACAAAAA--------------------------------------------------------------------------ATTA-TAT---TTAATTAT------------------------------------TAAAATT---------------------GATTTTTATGATAAAAATCAAAAATAATTATTACAGATCAATTTTTATTATAAAAATTGAATTGAAATATCTCTTGAACTAAAGG-AGC----T----------------------------------------------------------------------------------AGATCA------------------------------------------------------------T-------------------ATATTTATATATATATATGATC-----TACGCATTAATACCTTTCATT-TGA---TGTATA-ATATGTATGT---------AAATATGTAC----------ATG---------TA
droGri2 scaffold_15074:451782-452009 - TATAAGAGCTAGAG-------TCCACAAATT----TGGAATTGTAATAC-------ATTTAGATTTTCTTCTAATTAA-----TACAT-AATTTGCATATACA------------------------------------TACTATT---------------------GATCAAC-TGCCCAAATTTCATC-----------------------------AAGA----------------------TCGGATAAGAAAAA-CCCAAG---------TTA-TAATCGATAAATTCTCATA--TTGCTC---------------------------------------TC--------------------------------------------------A---------------TAGCGTCAA------TATGTTTTTGTGTGTAT-----------------------------------------TCTGCAGATCTCCATTAACTACGATTCCATGTAT----------ATA---------TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTGGGAACGAGACGAAAATATACACACATTTTCGAGAAACTGTGAT-C-------ATGT--ATTTACTTTTACCGAA-----AGTAT-TTT---TTGCTTAT------------------------------------TAAAATT---------------------AATTGCCGTAAACGAATTCCCGAAA-----------------------------------------------------AA---------------------AAGGTCAATG-CAATCAACAAACTCGTGCAAATTGAACCTACCT-AACAAGTAATGAATGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--GAGATTCTAAGCGTA---CAT--------------------A----------------------------------TGT---TATATGCCAACGTTCAT---------AAGTATGTAC----------ATA---------TASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................ACACACATTTTCGAGAAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21112.001222800000000000000
...................................................................................................................................................................................................................................................................................................................TACCT-AACAAGTAATGAATGTGG-A...................................................................................................................................................................................................................24110.001000000024310000000
...................................................................................................................................................................................................................................................................................................................................................CATTT-TT--------------------------------------------------ACA--GAGATTCTAAGCGTA---C...........................................................................................................................2612.00200200000000000000
..............................TTTCGAGAAACTGTGAT-C-------ATGT--ATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000001100000000
.........................CACATTTTCGAGAAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00210100000000000000
.............................TTTTCGAGAAACTGTGAT-C-------ATGT--ATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001010000000
..........................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------ACA--GAGATTCTAAGCGTA---CA..........................................................................................................................2112.00200000000200000000
..............................................................................................................................................................................................................................................................................................................................GTAATGAATGTGG-ATGTGAA.............................................................................................................................................................................................................2012.00200000000200000000
............................................................................................................................................................................................................................................................................................................................AAGTAATGAATGTGG-ATGTGA..............................................................................................................................................................................................................2112.00200000000000002000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACA--GAGATTCTAAGCGTA---CA..........................................................................................................................2012.00200000000200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------A----------------------------------TGT---TATATGCCAACGTTCAT---------AAGTA.............................2712.00200000000110000000
.....................................................................................................................................................................................................................................................................................................................................................TTT-TT--------------------------------------------------ACA--GAGATTCTAAGCGTA---CA..........................................................................................................................2511.00100000001000000000
...............................TTCGAGAAACTGTGAT-C-------ATGT--ATTTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
................................................................................................................................................................................................................................................................................................................ACCTACCT-AACAAGTAATGAATGTGG-A...................................................................................................................................................................................................................2711.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................TGTGAACATTT-TT--------------------------------------------------ACA--GAGATTCTAAG...................................................................................................................................2711.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................TGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--GAGA..........................................................................................................................................2611.00100000000100000000
...............................................................................................................................................................................................................................................................................................................................TAATGAATGTGG-ATGTGAACATT.........................................................................................................................................................................................................2311.00100000010000000000
.............................TTTTCGAGAAACTGTGAT-C-------ATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................TGTGAACATTT-TT--------------------------------------------------ACA--GAGATTCTAAGCG.................................................................................................................................2911.00100000000100000000
.......................CACACATTTTCGAGAAACTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..TGGGAACGAGACGAAAATATACACACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
............................ATTTTCGAGAAACTGTGAT-C-------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000100000000
................................................................................................................................................................................................................................................................................................................................AATGAATGTGG-ATGTGAACAT..........................................................................................................................................................................................................2111.00100000000010000000
............................ATTTTCGAGAAACTGTGAT-C-------ATGT--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.........................................................................................................................................................................TTGCCGTAAACGAATTCCCGAAA-----------------------------------------------------AA---------------------AAGG................................................................................................................................................................................................................................................................................2911.00100000001000000000
.............................TTTTCGAGAAACTGTGAT-C-------ATGT--ATTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
............................ATTTTCGAGAAACTGTGAT-C-------ATGT--ATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................TGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--GAGAAAA.......................................................................................................................................2911.00100000001000000000
...........................................................................................................................................................................GCCGTAAACGAATTCCCGAA.................................................................................................................................................................................................................................................................................................................................................................2011.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................T-AACAAGTAATGAATGTGG-ATGTGAACA...........................................................................................................................................................................................................2811.00100000000010000000
.......................CACACATTTTCGAGAAACTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................TT-TT--------------------------------------------------ACA--GAGATTCTAAGCGT................................................................................................................................2111.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................TGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--GAGAA.........................................................................................................................................2711.00100000000010000000
..............................................................................................................................................................................................................................................................................................CAAACTCGTGCAAATTGAACC.............................................................................................................................................................................................................................................2111.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TA---CAT--------------------A----------------------------------TGT---TATATGCCAACGTT..............................................2311.00100010000000000000
.................................................................................................................................................T---------------------AATTGCCGTAAACGAATTCCCGA..................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
droSec2
AGTGGGAACGAGACGAAAATATACACACATTTTCGAGAAACTGTGAT-C-------ATGT--ATTTACTTTTACCGAA-----AGTAT-TTT---TTGCTTAT------------------------------------TAAAATT---------------------AATTGCCGTAAACGAATTCCCAAAA-----------------------------------------------------AAA--------------------AAGGTCAATG-CAATCAACAAACTCGTGCAAATTGAAC-----T-AATAAGTAATGAATGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--GAGATTCTAAGCGTA---CAT--------------------A----------------------------------TGTAGATACTTGCCAACGTCCAT---------AAGTATGTAC----------ATA---------T-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTA---CAT--------------------A----------------------------------TGTAGATACTTG......................................................2211.0010100
..................................................................................................................................................................................................................................................................................................................................................ACATTT-TT--------------------------------------------------ACA--GAGATTCT......................................................................................................................................1911.0010001
dm3
AGTGCGACCGAGACGAAAATATATACACATTTTCGAGGAACTGTGAT-C-------ATTT--ATTTACTT-TACCGAA-----AGAAATTTT---TTGTTTCT------------------------------------TTAAATT---------------------AAGTGCCGTAAACGAAATCCCGAAA-----------------------------------------------------AT---------------------AAGATCAATG-CAATCAACAAACTCGTGCAGATTTAACC----T-AATAAGTAATG-GTGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--GAGATTCTGAGCCTA---CA------------------------------------------------TA--CATATGTAGATACTTGCCAACGTTCAT-------------TAGTAT----------GTA---------TASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................ACATTTTCGAGGAACTGTGAT-C-------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAGCCTA---CA------------------------------------------------TA--CATATGTAGA............................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGCCTA---CA------------------------------------------------TA--CATATGTAGA............................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..................................................................................................................................................................................................................................................................................................................................TG-GTGTGG-ATGTGAACATTT-TT--------------------------------------------------...................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CTCGTGCAGATTTAACC----T-AATAA..................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TTTCT------------------------------------TTAAATT---------------------AAGTGCCGT................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAAGTAATG-GTGTGG-ATGTGA..............................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................T-TT--------------------------------------------------ACA--GAGATTCTGAGCCTA---............................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CATTT-TT--------------------------------------------------ACA--GAGATTCTGAGCC.................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................T-AATAAGTAATG-GTGTGG-ATG.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CACATTTTCGAGGAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................CATTTTCGAGGAACTGTGAT-C-------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATTTTCGAGGAACTGTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................ACTCGTGCAGATTTAACC----T-AA.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AGTAATG-GTGTGG-ATGTG...............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..TGCGACCGAGACGAAAATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGATACTTGCCAACGTT..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAAGTAATG-GTGTGG-ATGTGAACAT..........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................T---------------------AAGATCAATG-CAATCAACA................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACATTTTCGAGGAACTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................T-TACCGAA-----AGAAATTTT---TTGTTTCT------------------------------------TT...................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CA--GAGATTCTGAGCCTA---CA------------------------------------------------TA--......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TG-GTGTGG-ATGTGAACATTT-TT--------------------------------------------------ACA--..............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CTCGTGCAGATTTAACC----T-AATAC..................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTAGATACTTGCCAACG................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...GCGACCGAGACGAAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................AAATT---------------------AAGTGCCGTAAACGAAATC......................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCAACGTTCAT-------------TAGTAT----------GT............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................TTGTTTCT------------------------------------TTAAATT---------------------AAGTGC...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TA---CA------------------------------------------------TA--CATATGTAGATACTTGCCAAC.................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................ATCCCGAAA-----------------------------------------------------AT---------------------AAGATCAA............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TATATACACATTTTCGAGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CAACAAACTCGTGCAGATTTAACC----T-.......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAGATACTTGCCAACGT...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................A---CA------------------------------------------------TA--CATATGTAGATACTTGC.....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TTT-TT--------------------------------------------------ACA--GAGATTCTGAGCCTA---CA------------------------------------------------..........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................T---------------------AAGTGCCGTAAACGAAATCCCGAA.................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------ACA--GAGATTCTGAGCCTA---CA------------------------------------------------TA--CATA..................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTGCCAACGTTCAT-------------TAGTAT----------GTA---------..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TGTGG-ATGTGAACATTT-TT--------------------------------------------------AC.................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TACCGAA-----AGAAATTTT---TTGTTTCT------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACACATTTTCGAGGAACTGTGAT-C-------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTTCGAGGAACTGTGAT-C-------ATTT--AT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCTA---CA------------------------------------------------TA--CATATGTAGATACT........................................................2611.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACACATTTTCGAGGAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAAGTAATG-GTGTGG-ATGTGAACATT.........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................T-TT--------------------------------------------------ACA--GAGATTCTGAGCCTA---CA------------------------------------------------TA--C.....................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CACATTTTCGAGGAACTGTGAT-C-------ATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AACC----T-AATAAGTAATG-GTGT.......................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGATACTTGCCAACGTTC.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
AGTGCGACCGAGACGAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................TTGTTTCT------------------------------------TTAAATT---------------------AAGTGCCG.................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................TTTAACC----T-AATAAGTAATG-GTGTGG-A...................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAGCCTA---CA------------------------------------------------TA--TGG...................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGTGCGAACGAGACGAAAATATGTACAAATTTTCGAAGAACTGTGAT-C-------ATTT--ATTTACTTTTACCGAC-----AGTTT-TTTATTTTGTTTTC------------------------------------TTAAATT---------------------AATCAGCGTAAACGAATTCACGAAT-----------------------------------------------------CT---------------------AAGATCAATGGTGCTTAACAAACTCGTGTACATTGTACATACATAAATAACTAATG-GTGTG--ATGTGAACATTT-TT--------------------------------------------------ACA--AAGATTCTGAGCAT----CAT----------------------------------------------------------AAATACATGCCAGCAA-------------ACATATGTAC----------ATACATACGTCATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................T---------------------AAGATCAATGGTGCTTAACAAACTCGTG........................................................................................................................................................................................................................................................2911.0011000000
.........................................................................................................................................................................................................................................................................................................................AATAACTAATG-GTGTG--ATGTGAAC............................................................................................................................................................................................................2411.0010001000
................................................................................................................................................................................................................................................................................................................................AATG-GTGTG--ATGTGAACAT..........................................................................................................................................................................................................1911.0010001000
droYak3
CGTGCGAACGAGACAAAAATATGTACAAATCTTCGAGGAACTGTGAT-C-------ATTT--GTTTACTTTTACCGAA-----AGCTT-TTTATTTTATTATC------------------------------------CTATATT---------------------AATCACCGTAAACGAATTCCCGAAT-----------------------------------------------------CT---------------------AAGATCAATGGTGCTCAACAAACTCGTGTACAGTGTACATACATAAAAAAGTAATG-GTGTGG------------------------------------------------------------------------AGATTCTGAGCATT---CAT----------------------------------------------------------AGATACATGCCAACAA-------------ACATATGTAC----------ATA---------T-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................TAATG-GTGTGG------------------------------------------------------------------------AGATTCTGAGC..................................................................................................................................2211.00100100000000
droEug1
ACTGGGAACGAGACGAAAAGATGTACAAATTTTCGTGGAACCGTGAT-C-------ATTT--TTGTA--------------------T-TTTGTGTTGTTTCC------------------------------------TTATTTG---------------------ATTACTTATAAACCAATTTCCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGAGCGAACGAGACGAAAATATGTACAAATTTTCGACAAACTGTGAT-C-------ATTT--ATTTACATTTACCGAA-----AGTAT-TTTGAGATGCTTCC------------------------------------TTAAATT---------------------AA---CAAAAAACAAATTCCTGAAA-----------------------------------------------------CTTAAAGCAAG---CCAGAT---------------GTTCACAAAACTTAAGTACA-----------TAACAAATTACACAGTGTGA-ATGTGAA--TTC-CT--------------------------------------------------ACC--AAAATTCTGTGCAAA---GAT----------------------------------------------------------------------------------------------TGG------------A---------T-SizeHit CountTotal NormTotal
No Reads
droTak1
AGTGCGAACGAGACGAAAATATGTACAAATTTTCGTGGAACTGTGAT-C-------ATTT--ATTTACTTTTACCGAA-----AGTAT-GTTGTGTTGTTTCC------------------------------------TTAAATT---------------------AATCCAC-AAAAAAAATTTCTGAAC-----------------------------------------------------CTGAAAGCAAA----CAGAT---------------GCTCACAGAACTTATGTACA-----------TAATTAAGTACATAGTGTGG-ATGTAAAGACTT-T---------------------------------------------------ACC--AAAATTCTGTACTCC---G-------------------------------------------------------------------------------------------------------------ATT--------GT-SizeHit CountTotal NormTotal
No Reads
droEle1
AGTGCGAACGAGACGAAAATATGTACAACTTTTCGGGGAACTCTGAT-C-------GTTT--ATTTACTTTTCCCGAA-----AGTGT-TTTGTGTTGTTTCC------------------------------------TTAAATT---------------------AATCGAC-AAAACAAATTCCTGAAC-----------------------------------------------------CTTAAAGCCAA----CGGAT---------------GCTCACCGAACTCATGTGCA-----------CAAACAAGTACAAAGTGTGG-ACGTAAACATTT-T---------------------------------------------------ACAACAAAGTTTTGT------------------------------------------------------------------------------------------------------GCGTGC----------ATA---------TASizeHit CountTotal NormTotal
No Reads
droRho1
AGTGCGAACGAGACGAAAATATGTACAAATTTTCGAGGAACTCTGAT-C-------ATTT--ATTTACTTTTACCGAG-----AGCAT-TTTGTGTTGTTTCT------------------------------------TAAAAAT---------------------TATTCAC-AAACAACATTTCTGAGT-----------------------------------------------------CTGAACGTTAA----CAGAT---------------GCTCACAGAACTCATGTACA-----------CAATCTAGTACAAAGTGTGG-ATGTGAACATTT-T---------------------------------------------------ACAACAAATTTCTGTGC-------------------------------------------------------------------------------------AT---------AAATGTTTAA----------ATA---------TASizeHit CountTotal NormTotal
No Reads
droFic1
AGTGTAAACGAGACGGAAATATGCAAACCTTTTTGAGAAACAGTGAT-C-------ATTT--ATTTACTTTTACCAAA-----AGTAG-TTTGTATAGTTGTA------------------------------------TTAAATT---------------------A-TTAAT-AAAAAGAATTCCTGGA------------------------------------------------------TTGAAAGAGAG----GAAATGATAAAATAGATCGCTCTAAACAA--------------------------------AACAATGTGG-ATGTAAACATTT-TT--------------------------------------------------TTA--TAGATAATAT-------------------------------------------------------------------------------GTACATATAC---------GTTTATGGAC----------GTA---------TGSizeHit CountTotal NormTotal
No Reads
droKik1
TGTAAGTAATAA-----------------TAATCGTAGTAATCGT-------------------------------------------------------------ATTACGCAAATAATAGTGATCTTAGGTGTGTAGTAAAAAT---------------------TATT------------------------------------------------------------------------------------------------------------------TGAAATATGCATA--ATTT---------------------------------------------------------------------------------------------ACA-----------AGTATT---CTT----------------------------------------------------------TGTCAAATGTTATCCTTTAT---------ATGTGTGTAC----------ATG---------TASizeHit CountTotal NormTotal
No Reads
droAna3
TAAGGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATAC------------------------------------------------------------T-----------------------------------------------------------------------------GTGCCTACATACAT---------ACATATGTAC----------ATA---------CASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AATTGAAATCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGAAAAT------------------------------------------------------------------------------------------------ATCGAATATATATATATAAATATATATGTATATGCATCATAAATAAGGTAATTTATAAA-TAATTC------------------------------------------------------------------------------------------------------ATTTCATAT----------ACA---------TASizeHit CountTotal NormTotal
No Reads
dp5
TGTG--AAAGAGACAAAAATATGTACAA-CTTTCGATAAACTGTGAT-CATACATCATTT--ATTTACTTATACTAAAACAACAGTTT-TCTGTGTTGTTTTC------------------------------------CTGAATACATATGTTCATATGTACATGC-ATCCGA-AATATCAACTCTTGAAA-----------------------------------------------------CTGGAAGAAAA----CAGAT---------------GCTCTAGCAAC----------------------------------GTGTGGAATGTGTG--TTC-TC--------------------------------------------------G--------------------TAAA------T--------------ATGTATATATATGTACTGATATATACAT---------------------------------------AAATATGTATATGTGTGAATTTA---------CASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................GTTT-TCTGTGTTGTTTTC------------------------------------CTG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................GTTT-TCTGTGTTGTTTTC------------------------------------CTGA.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
......................................................................ATACTAAAACAACAGTTT-TCTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
........................................................................................................................................................................................................................................................GAAGAAAA----CAGAT---------------GCTCTA..................................................................................................................................................................................................................................................................1911.0010001000000
..............................................................................................................................................................................................................................................................................................GCAAC----------------------------------GTGTGGAATGTGTG--T..........................................................................................................................................................................................................2011.0010000100000
.....................................................................................................................................................................................................................................................................AGAT---------------GCTCTAGCAAC----------------------------------GTGTGG.....................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................AC----------------------------------GTGTGGAATGTGTG--TTC-.......................................................................................................................................................................................................1911.0010100000000
......................GTACAA-CTTTCGATAAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
droPer2
TGTG--AAAGAGACAAAAATATGTACAA-CTTTCGATAAACTGTGAT-CATTCATCATTT--ATTTACTTATACTAAAACAACAGTTT-TCTGTGTTGTTTTC------------------------------------CTGAATACATATGTTCATATGTACATGC-ATCCGA-AATATCAACTCTTGAAA-----------------------------------------------------CTGGAAGAAAA----CAGAT---------------GCTCTAGCAAC----------------------------------GTGTGGAATGTGTG--TTC-TC--------------------------------------------------G--------------------TAAA------T--------------ATGTATATATATGTACTGATATATACAT---------------------------------------AAATATGTATATGTGTGAATTTA---------CASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................CTGGAAGAAAA----CAGAT---------------GCTCT...................................................................................................................................................................................................................................................................2111.001000010
....................................................................................GTTT-TCTGTGTTGTTTTC------------------------------------CTGA.................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........................AA-CTTTCGATAAACTGTGAT-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............AAAAATATGTACAA-CTTTCGATAAACTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.....................................................................................................................................................................................................................................................................AGAT---------------GCTCTAGCAAC----------------------------------GTGTGG.....................................................................................................................................................................................................................2111.001000001
droWil2
AACAAAGTTTC-----------ACAAAC---------------------------------------------------------------------AATTCCCAAAAAAGGTCAAAATTAAAACTCTTAGA----------------------------------------------------------AG-----------------------------------------------------AGGAAAACGAA--------------------------------------------TTGA-------------AGAAATG-ATTTTG-ATATATGTAT----------------GTAACT--------------------------------------------------ATA---TAT----------------------------------------------------------AC----ATACATATATATAC---------AAATATGTAC----------ATA---------TASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTTATTATA--------------------------------------------------------------------------AATAT-TGG---CTGAGTAT------------------------------------TCAAATT---------------------AAGTA-----AAAAAAT-CAGGAAA-----------------------------------------------------AA----------------------------------AATGACAAATATTCATG--ATTTAT---------------------------------------TT--------------------------------------------------A---------------TATG---CTTGATTGTATGTATTTGTGTGCATATGAACATATGTAAGCATGTATGTTT--------------------GAATGTATGT---------ATGAAGGTAT----------GTA---------TASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTT--------------------GAATGTATGT---------ATG...............................2020.501000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTTT--------------------GAATGTATGT---------ATGT..............................23200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
TTTACAAAAA--------------------------------------------------------------------------ATTA-TAT---TTAATTAT------------------------------------TAAAATT---------------------GATTTTTATGATAAAAATCAAAAATAATTATTACAGATCAATTTTTATTATAAAAATTGAATTGAAATATCTCTTGAACTAAAGG-AGC----T----------------------------------------------------------------------------------AGATCA------------------------------------------------------------T-------------------ATATTTATATATATATATGATC-----TACGCATTAATACCTTTCATT-TGA---TGTATA-ATATGTATGT---------AAATATGTAC----------ATG---------TASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGA---TGTATA-ATATGTATGT---------AAATATG...........................2712.002110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---TGTATA-ATATGTATGT---------AAATATG...........................2612.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGA---TGTATA-ATATGTATGT---------AAATA.............................2511.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGA---TGTATA-ATATGTATGT---------AAAT..............................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGA---TGTATA-ATATGTATGT---------AAATAT............................2611.001100000
..........................................................................................................................................................................................................................................TATCTCTTGAACTAAAGG-AGC----T----------------------------------------------------------------------------------AGA......................................................................................................................................................................................................2551.005500000
..........................................................................................................................................................................................................................................TATCTCTTGAACTAAAGG-AGC----T----------------------------------------------------------------------------------AG.......................................................................................................................................................................................................2460.503300000
...........................................................................................................................................................................................................................................ATCTCTTGAACTAAAGG-AGC----T----------------------------------------------------------------------------------AGA......................................................................................................................................................................................................2450.402200000
..........................................................................................................................................................................................................................................TATCTCTTGAACTAAAGG-AGC----T----------------------------------------------------------------------------------AGAT.....................................................................................................................................................................................................2650.201100000
...............................................................................................................................................................................................................................TTGAATTGAAATATCTCTTGAACTAAAGA-...................................................................................................................................................................................................................................................................................................2950.201100000
..........................................................................................................................................................................................................................................TATCTCTTGAACTAAAGG-AGC----T----------------------------------------------------------------------------------AGT......................................................................................................................................................................................................2560.171100000
.................................................................................................................................................................................................................................GAATTGAAATATCTCTTGAACT.........................................................................................................................................................................................................................................................................................................22130.152200000
..................................................................................................................................................................................................................................AATTGAAATATCTCTTGAACT.........................................................................................................................................................................................................................................................................................................21140.142200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATATGATC-----TACGCA..................................................................................21140.142200000
.....................................................................................................................................................................................................................................TGAAATATCTCTTGAACTAAAGG-...................................................................................................................................................................................................................................................................................................2370.141100000
..........................................................................................................................................................................................................................................TATCTCTTGAACTAAAGG-AGC----T----------------------------------------------------------------------------------.........................................................................................................................................................................................................2270.141000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATACCTTTCATT-TGA---TGTATA-A....................................................2580.131100000
..........................................................................................................................................................................................................................................TATCTCTTGAACTAAAGG-AGC----............................................................................................................................................................................................................................................................................................2180.131000010
...............................................................................................................................................................................................................................................................C----T----------------------------------------------------------------------------------AGATCA------------------------------------------------------------T-------------------ATATTTATATA........................................................................................................2080.131100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA-ATATGTATGT---------AAATATGTAC----------..............2490.111100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGATC-----TACGCATTAATACCTTTC......................................................................2790.111100000
..........................................................................................................................................................................................................................................TATCTCTTGAACTAAAGG-A..................................................................................................................................................................................................................................................................................................1990.111100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATC-----TACGCATTAATACCTTTCATT-..................................................................2690.111100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----TACGCATTAATACCTTTCA.....................................................................21110.091100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCATTAATACCTTTCATC-C.................................................................22120.081100000
.........................................................................................................................................................................................................................TAAAAATTGAATTGAAATATCT.................................................................................................................................................................................................................................................................................................................22140.071000010
.................................................................................................................................................................................................................................GAATTGAAATATCTCTTGAAC..........................................................................................................................................................................................................................................................................................................21140.071100000
........................................................................................................................................................................................................................ATAAAAATTGAATTGAAATAT...................................................................................................................................................................................................................................................................................................................21150.071100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGATC-----TACGCATTAATACCTT........................................................................25160.061100000
............................................................................................................................................................................................................................AAATTGAATTGAAATATCTCT...............................................................................................................................................................................................................................................................................................................21160.061100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATGATC-----TACGCATTAATACCT.........................................................................26160.061000010
...............................................................................................................................................................................................................................TTGAATTGAAATATCTCTTGA............................................................................................................................................................................................................................................................................................................21170.061100000
..............................................................................................................................................................................................................................ATTGAATTGAAATATCTCTT..............................................................................................................................................................................................................................................................................................................20180.061100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATC-----TACGCATTAATACC..........................................................................20190.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATC-----TACGCATTAATACCT.........................................................................20190.051100000
..............................................................................................................................................................................................................................ATTGAATTGAAATATCTCT...............................................................................................................................................................................................................................................................................................................19190.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATC-----TACGCATTAATACCT.........................................................................22190.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATC-----TACGCATTAATACC..........................................................................21190.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGATC-----TACGCATTAATAC...........................................................................21190.051100000
...........................................................................................................................................TAAAATT---------------------GATTTTTATGATAA...........................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droGri2
TATAAGAGCTAGAG-------TCCACAAATT----TGGAATTGTAATAC-------ATTTAGATTTTCTTCTAATTAA-----TACAT-AATTTGCATATACA------------------------------------TACTATT---------------------GATCAAC-TGCCCAAATTTCATC-----------------------------AAGA----------------------TCGGATAAGAAAAA-CCCAAG---------TTA-TAATCGATAAATTCTCATA--TTGCTC---------------------------------------TC--------------------------------------------------A---------------TAGCGTCAA------TATGTTTTTGTGTGTAT-----------------------------------------TCTGCAGATCTCCATTAACTACGATTCCATGTAT----------ATA---------TTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:23 PM