dsi_6610

exon [2l_5742298_5742390_+]; CDS [2l_5742298_5742390_+]; exon [2l_5742076_5742229_+]; CDS [2l_5742076_5742229_+]; intron [2l_5742230_5742297_+]

##################################################--------------------------------------------------------------------################################################## ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGAGCTTAGAATCCAATAAGATTCGAATTGTTAACTAAAGACTGATCCTCTTTGCTTGCAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTCAAGC ************************************************......((..((..(((.........((((....((........))....)))).)))..))....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M024 male body	M025 embryo	M023 head	SRR902008 ovaries	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
.....................ATGCTGAAGAACAAGGGTCTG..............................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0
.......AGGAGGTCAACTACATGCTGAAGAACAA.....................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0	0	0	0
..............CAACTACATGCTGAAGAAC.......................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAG...........................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0
................ACTACATGCTGAAGAACAAGGGTCTGGA............................................................................................................................	28	0	1	1.00	1	0	0	0	0	0	0	0	1
..............................................................................................AAGACTGATCCTCTTTGCTTGCAG..................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0
.................CTACATGCTGAAGAACAAGGGTA................................................................................................................................	23	1	1	1.00	1	0	0	0	0	1	0	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAGG..........................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0
....................................................................................................................................CGGCTATCCACAAAATATG.................	19	0	1	1.00	1	0	1	0	0	0	0	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAGGA.........................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0
...................ACATGCTGAAGAACAAGGGT.................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................TGAAGAACAAGGGTCTGGAGGACA.......................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0
.........................TGAAGAACAAGGGTCTGGAGGAC........................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0
......................................TCTGGAGGACAAGTACGACT..............................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0
................................................................................CGAATTGTTAACTAAAGACTGATC................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0
............................AGAACAAGGGTCTGGAGG..........................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0
..........................GAAGAACAAGGGTCTGGAGGAC........................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................AAGGGTCTGGAGGACAAAT....................................................................................................................	19	1	1	1.00	1	0	0	0	0	0	0	1	0
.......................GCTGAAGAACAAGGGTCTGGAG...........................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0
......................TGCTGAAGAACAAGGGTCT...............................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................................................................................TCTGATCCTCTTTGCTTGACGA.................................................	22	3	2	0.50	1	0	0	0	0	1	0	0	0
.....................................................................................TGTTAACTTAAGACTGTGCCT..............................................................	21	3	2	0.50	1	0	0	0	1	0	0	0	0
..........................................................................................................CTTTGCTTGATGATTCCC............................................	18	2	7	0.14	1	0	0	0	0	0	1	0	0
..........................................................................................................CTTTGCTTGCTGATTCGC............................................	18	2	11	0.09	1	0	0	0	0	0	1	0	0

TGACGGCTCCTCCAGTTGATGTACGACTTCTTGTTCCCAGACCTCCTGTTCATGCTGACTCGAATCTTAGGTTATTCTAAGCTTAACAATTGATTTCTGACTAGGAGAAACGAACGTCTAAGGGGGACAAGTGCCGATAGGTGTTTTATACGTGTTTAGTCGAGTTCG ************************************************......((..((..(((.........((((....((........))....)))).)))..))....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
TGAGGGGTCCGCCAGTTGA.....................................................................................................................................................	19	3	20	0.40	8	4	2	0	0	1	1
...................................................................................................................GTCTAAGGGGAACAGGTG...................................	18	2	3	0.33	1	0	0	0	1	0	0
...................................................................................................................GTCTAAGGGGAACAGG.....................................	16	2	20	0.30	6	2	1	3	0	0	0
...................................................................................................................GTCTAAGGGGGACAGGC....................................	17	2	14	0.29	4	1	3	0	0	0	0
............................................................................................TTTTCTGACTAGGAG.............................................................	15	1	8	0.13	1	0	0	1	0	0	0
..................................................................TTAGGTTATTCTGGGCT.....................................................................................	17	2	20	0.10	2	2	0	0	0	0	0
................................................................................................................................AAGTGGCGATAGGTG.........................	15	1	10	0.10	1	1	0	0	0	0	0
................................................................................................................................AAGTGGCGTTAGGTGTT.......................	17	2	13	0.08	1	1	0	0	0	0	0
.................GAGGTATGACTTCTTGTT.....................................................................................................................................	18	2	14	0.07	1	0	0	1	0	0	0
.......TCCTCCAGTTGAAGTGC................................................................................................................................................	17	2	15	0.07	1	1	0	0	0	0	0
............................................................................................TTTTCTGACTAGGAGAC...........................................................	17	2	15	0.07	1	0	0	1	0	0	0
...........................................TCCTGTTCATGTTGACTTGG.........................................................................................................	20	3	16	0.06	1	0	1	0	0	0	0
..........................................................................................................................................AGCTGTTCAATACGTGTTTA..........	20	3	17	0.06	1	0	0	0	0	1	0
..............................................................................................................................AAAAGTGCCGAGAGGTCTT.......................	19	3	20	0.05	1	0	1	0	0	0	0
TGAAGGGTCCTCCAGT........................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:5742180-5742347 +	dsi_6610	ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGAGCTTAGAATCCAATAAGATTCG------A----------AT-----------------TG---TTAA---CTAAAGA-------CTGATC----CTCTTTGCTTGCAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTCAAGC
droSec2	scaffold_5:4017791-4017958 +		ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGAGCTTATAATCCAATAAGGTTCG------A----------AT-----------------AG---TTAA---CTAAACA-------CTGATC----TTCTTTGCTTGCAGATTTCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTCAAGC
dm3	chr2L:5947122-5947289 +		ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGAGCTTATTATCCAATCCAATTCA------A----------AT-----------------AG---TTAA---CTTAACA-------CTGATC----TTCTTTGCTTGCAGATTCCCCCTGTTCACGGCTATTCACAAAATATGCACAAATCAGCTCAAGC
droEre2	scaffold_4929:6032526-6032689 +		ACTGCCGAGGAGGTGAACTACATGCTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGATCTTTTAATCCCATCAGATTCG------A---------------------------AC---------AG-CCTAAAA-------CTGATC----TTTTTTGCTTGCAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTCAAGC
droYak3	2L:13249138-13249300 -		ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGGCTGGAGGACAAGTACGACCGAACTTATAAGCCAATCAAATT-G------A---------------------------AT---------AG-CCTATAA-------CTGATC----TCCTTTGCTTGCAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTCAAGC
droEug1	scf7180000409004:19929-20094 -		ACTGCCGAGGAGGTGAACTATATGTTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGATTTAACAAC--TAGGATTA--------------------------TAA--------A-----------A-TAGAATATATCTAACTGATT----CCCATCTATTGCAGATTCCCTCTATTCACGGCTATCCACAAAATATGCACAAATCAGCTTAAGC
droBia1	scf7180000301629:27622-27784 +		ACTGCCGAGGAGGTTAACTACATGCTTAAGAACAAGGGTCTAGAGGACAAGTACGTTTAAAATAGTAATGTAATGGTACTCT----------------------------------TA---------GG-TCTAAAA-------CGCCAC----TTTATTGATTGCAGATTCCCTCTGTTCACGGCTATCCACAAAATATGCACAAACCAGCTTAAGC
droTak1	scf7180000413260:7221-7387 +		ACTGCCGAGGAGGTGAACTACATGCTAAAGAACAAGGGCCTAGAGGACAAGTACGACTAGTTTTATAATCAAATGGTATTCT-------------------------TGATCT--------------AT-TCTACAA-------CAAATT----TTTTTTAATTTCAGATTTCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTTAAGC
droEle1	scf7180000491120:19178-19340 -		ACTGCCGAGGAGGTGAACTATATGCTGAAGAACAAGGGTCTAGAGGACAAGTACGACTGATCTTTTAAGCCAATGGTTTTCA----------------------------------AA---------AA-TTAATAA-------CAAACC----TTCATCGATTGCAGATTCCCCCTGTTCACGGCCATCCACAAAATATGCACAAATCAGCTTAAGC
droRho1	scf7180000777871:2416-2577 -		ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGACTAGAAGACAAGTACGACTGATCTTATAAGACAATGTTGTTCA------A---------------------------AA------------TAAATAA-------CTAATC----TCCATCGATTGCAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTTAAGC
droFic1	scf7180000453813:102809-102970 -		ACTGCCGAGGAGGTGAACTACATGCTTAAGAACAAGGGTTTAGAGGACAAGTACGAATTATTTTTGAACCCAATGGTTTTCG----------------------------------TA---------A--ATTAAAA-------AAGAAT----TTTATCGTTTACAGATTCCCCCTGTTCACCGCTATCCACAAAATATGCACACAACAGCTTAAAC
droKik1	scf7180000300796:54547-54710 -		ACTGCCGAGGAGGTGAACTACATGCTGAAGAACAAGGGACTGGAGGATAAGTATGGC--ATCTACA-----AATAATAATC--------------------ATTTTAA--------AG---------AA-ATATTAA-------CTAATC--TTTCTTTATATTACAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTTAAGC
droAna3	scaffold_12916:11360212-11360373 +		ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGGCTGGAGGACAAGTAAGCTTCAA------TATTAATAATTT-TG------A---------------------------AA---------CACTATTTAA-------CTGAAACCACTCTCTGCATTGCAGGTTTCCTCTGTTCACGGCTATCCACAAAATTTGCACAAATCAGCTCAAGC
droBip1	scf7180000396572:1027007-1027164 +		ACTGCCGAGGAGGTTAACTACATGCTGAAGAACAAGGGGCTGGAGGACAAGTAAGCTTT----------CCCATAAACATCA------A----------AT-----------------AC---TAAAGA-TTTAAAA-------C--ACC----ATCCATTTTTGCAGGTTTCCTCTGTTCACGGCTATCCACAAAATTTGCACAAATCAGCTCAAGC
dp5	3:3288055-3288201 +		ACTGCCGAACTGGTTCACATTTTACTCAAGAAAAAAGGATTGGTGGACAAGTGCGCTCGAGAGCCTTTTACTGGCATTTTCT------G---------------------------------------A-TACGTTACCCCT------GT----TTGTTTTTTTACAGATTTCCACTGTTTACAACGGTCTATAAAATCTGCA---------------
droPer2	scaffold_1:341649-341822 -		ACTGCCGAGGAAGTCAATTATATGTTGAAGAACAAGAAACTGGAGGATAAGTACGGAACACCCCACAAC--A---CCCTTCC----TAT-ATTCTATAT--------GTA---------T---TTATGA-TGTGTC---TTT------CT----CTTCTCTTTTCTAGATTCCCCCTGTTTACGGCCATTCATAAGATATGCACAAATCAGCTTAAGC
droWil2	scf2_1100000004521:8045441-8045605 -		ACAGCCGAAGAGGTTAACTACATGCTGAAGAACAAGAAATTGGAGGATAAGTAAGAAGGAT-----AACCAAACAATATTTG------A---------------------------AATGATCTT------TTGTAA-------TTAATC--AATCGTTCCTTTACAGATTCCCCTTGTTCACGGCTATACACAAAATATGCACAAATCAGCTTAAAC
droVir3	scaffold_12963:3217516-3217684 +		ACTGCCGAGGAGGTTAACTATATGTTGAAAAACAAAGGCCTGGAGGATAAGTGCGTGCCACTTTGTATATC----------CAAACTAA-AATC-------GTA---------------T---TTAA---CAAATTGTTTAT------AT----TTATATACTTGCAGATTCCCATTGTTCACCGCCATACACAAAATTTGCACAAATCAGCTTAAGC
droMoj3	scaffold_6500:13584429-13584606 +		ACTGCCGAGGAAGTCAACTATATGTTGAAGAACAAAGGCTTGGAGGATAAGTAAGCTCGAAAAAGCTATACA---AGATTCA------AATATCAGTAT--------GTATCTATATA------------TATTTAA-------CAAAAT----TCAATTTCTTGCAGATTCCCACTGTTCACAGCTATACATAAAATTTGCACAAATCAGCTTAAGC
droGri2	scaffold_15252:2810275-2810443 +		ACGGCAGAGGAGGTCAACTACATGTTGAAAAACAAAGGCTTGGAGGACAAGTATGCTTAGGCTAAACATTTCAG---GCCTA-----------------------ATTTATTTAT-TA------------TATTAACCAAAT------AT----CAACTTACTTTCAGATTCCCCCTATTTACTGCCATACACAAAATTTGCACAAATCAGCTTAAGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGAGCTTAGAATCCAATAAGATTCG------A----------AT-----------------TG---TTAA---CTAAAGA-------CTGATC----CTCTTTGCTTGCAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTCAAGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................ATGCTGAAGAACAAGGGTCTG................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.......AGGAGGTCAACTACATGCTGAAGAACAA.......................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..............CAACTACATGCTGAAGAAC.........................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAG.............................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACTACATGCTGAAGAACAAGGGTCTGGA..............................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................AAGA-------CTGATC----CTCTTTGCTTGCAG..................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTACATGCTGAAGAACAAGGGTA..................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAGG............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CGGCTATCCACAAAATATG.................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAGGA...........................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACATGCTGAAGAACAAGGGT...................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................TGAAGAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGAAGAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................TCTGGAGGACAAGTACGACT................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CG------A----------AT-----------------TG---TTAA---CTAAAGA-------CTGATC----................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AGAACAAGGGTCTGGAGG............................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAAGAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GCTGAAGAACAAGGGTCTGGAG.............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................TGCTGAAGAACAAGGGTCT.................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGAGCTTATAATCCAATAAGGTTCG------A----------AT-----------------AG---TTAA---CTAAACA-------CTGATC----TTCTTTGCTTGCAGATTTCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTCAAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................AGAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	21	1	3.00	3	0	3	0	0
.......................GCTGAAGAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	26	1	2.00	2	0	2	0	0
......................TGCTGAAGAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	27	1	2.00	2	0	2	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	27	1	2.00	2	1	1	0	0
..................................................................................................................................................................................................AAATATGCACAAATCAGCTCA...	21	1	2.00	2	0	2	0	0
.........................TGAAGAACAAGGGTCTGGA..............................................................................................................................................................................	19	1	1.00	1	0	0	1	0
................ACTACATGCTGAAGAACAAGGGTCTGGA..............................................................................................................................................................................	28	1	1.00	1	0	1	0	0
...................ACATGCTGAAGAACAAGGGTCTG................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
.............................GAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	20	1	1.00	1	0	0	1	0
......................TGCTGAAGAACAAGGGTCT.................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
.............................GAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	19	1	1.00	1	1	0	0	0
.CTGCCGAGGAGGTCAACTAC.....................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...............AACTACATGCTGAAGAACAAGGGTCT.................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
................ACTACATGCTGAAGAACAAGG.....................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
......................TGCTGAAGAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	26	1	1.00	1	0	1	0	0
............................AGAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	20	1	1.00	1	0	0	0	1
...............AACTACATGCTGAAGAACAAGGGTCTGGA..............................................................................................................................................................................	29	1	1.00	1	0	1	0	0
.........................TGAAGAACAAGGGTCTGGAG.............................................................................................................................................................................	20	1	1.00	1	0	1	0	0
............GTCAACTACATGCTGAAGAACAAGGGT...................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
..........................GAAGAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.CTGCCGAGGAGGTCAACTACA....................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.................CTACATGCTGAAGAACAAG......................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
..........................................................................................................................................................................TTCCCCTGTTCACGGCTATCC...........................	21	1	1.00	1	0	1	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	28	1	1.00	1	0	1	0	0
..........................GAAGAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	22	1	1.00	1	0	1	0	0
........................CTGAAGAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	25	1	1.00	1	1	0	0	0
...........................AAGAACAAGGGTCTGGAG.............................................................................................................................................................................	18	1	1.00	1	1	0	0	0
.......................GCTGAAGAACAAGGGTCTGGA..............................................................................................................................................................................	21	1	1.00	1	0	1	0	0

dm3

ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGAGCTTATTATCCAATCCAATTCA------A----------AT-----------------AG---TTAA---CTTAACA-------CTGATC----TTCTTTGCTTGCAGATTCCCCCTGTTCACGGCTATTCACAAAATATGCACAAATCAGCTCAAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......GAGGAGGTCAACTACATGCT................................................................................................................................................................................................	20	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GAACAAGGGTCTGGAGGACAAA.......................................................................................................................................................................	22	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TGCTGAAGAACAAGGGTCTGGA..............................................................................................................................................................................	22	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AGAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AACAAGGGTCTGGAGGAC..........................................................................................................................................................................	18	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACTGCCGAGGAGGTCAACTAC.....................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....CGAGGAGGTCAACTACATGCTGA..............................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGCCGAGGAGGTCAACTACATGCTGAAG............................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATATGCACAAATCAGCTC....	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CAAGGGTCTGGAGGACAATC......................................................................................................................................................................	20	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TGCTGAAGAACAAGGGTCAC................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAGGGTCTGGAGGACAATC......................................................................................................................................................................	19	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CTTTGCTTGCAGATTCGG............................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACTGCCGAGGAGGTGAACTACATGCTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGATCTTTTAATCCCATCAGATTCG------A---------------------------AC---------AG-CCTAAAA-------CTGATC----TTTTTTGCTTGCAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTCAAGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................GAAGAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	22	1	2.00	2	0	1	0	0	1	0	0
..TGCCGAGGAGGTGAACTACATGC.................................................................................................................................................................................................	23	1	2.00	2	0	1	0	1	0	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAGG............................................................................................................................................................................	25	1	2.00	2	0	0	0	1	1	0	0
..........................GAAGAACAAGGGTCTGGAGGA...........................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
..........................GAAGAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	23	1	2.00	2	1	0	0	0	1	0	0
...............AACTACATGCTGAAGAACAA.......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................ATCCACAAAATATGCACAAATC.........	22	1	1.00	1	0	0	0	0	1	0	0
.........GAGGTGAACTACATGCTGAAGAACAAG......................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.................CTACATGCTGAAGAACAAGGGTCTG................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
...GCCGAGGAGGTGAACTACATGCT................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.CTGCCGAGGAGGTGAACTACATGCT................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
................ACTACATGCTGAAGAACAA.......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.........GAGGTGAACTACATGCTGAA.............................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
....................CATGCTGAAGAACAAGGGTCT.................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
..........................GAAGAACAAGGGTCTGGAGG............................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
............GTGAACTACATGCTGAAG............................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...........................AAGAACAAGGGTCTGGAGGA...........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...................ACATGCTGAAGAACAAGGGTCT.................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
................................CAAGGGTCTGGAGGACAAA.......................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..TGCCGAGGAGGTGAACTACA....................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...............AACTACATGCTGAAGAACA........................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.....................ATGCTGAAGAACAAGGGTCTGGAG.............................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
.CTGCCGAGGAGGTGAACTACATGC.................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
....CCGAGGAGGTGAACTACATGCTGAA.............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.................CTACATGCTGAAGAACAAG......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.................CTACATGCTGAAGAACAAGGGT...................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.................CTACATGCTGAAGAACAAGG.....................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
............GTGAACTACATGCTGAAGAAC.........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................GGCTATCCACAAAATATGCAC..............	21	1	1.00	1	1	0	0	0	0	0	0
...................ACATGCTGAAGAACAAGGGT...................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.............................GAACAAGGGTCTGGAGGACA.........................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
..........................GAAGAACAAGGGTCTGGA..............................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
......................TGCTGAAGAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...GCCGAGGAGGTGAACTACATGC.................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.............................GAACAAGGGTCTGGAGGA...........................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................TCCCCCTGTTCACGGCTATCCACA........................	24	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................AGATTCCCCCTGTTCACGGCT...............................	21	1	1.00	1	0	1	0	0	0	0	0
................ACTACATGCTGAAGAACAAGGGTCTGGA..............................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.......................GCTGAAGAACAAGGGTCTGGAG.............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........GGAGGTGAACTACATGCTGAAGA...........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.............................GAACAAGGGTCTGGAGGAC..........................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
................ACTACATGCTGAAGAACAAGGGC...................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................CTGTTCACGGCTATCCACA........................	19	1	1.00	1	1	0	0	0	0	0	0

droYak3

ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGGCTGGAGGACAAGTACGACCGAACTTATAAGCCAATCAAATT-G------A---------------------------AT---------AG-CCTATAA-------CTGATC----TCCTTTGCTTGCAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTCAAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........GGTCAACTACATGCTGAAGAACAAGG.....................................................................................................................................................................................	26	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
.................CTACATGCTGAAGAACAAGG.....................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
...............AACTACATGCTGAAGAACAA.......................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
............................AGAACAAGGGGCTGGAGGACA.........................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
ACTGCCGAGGAGGTCAACTACA....................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............CAACTACATGCTGAAGAAC.........................................................................................................................................................................................	19	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
..TGCCGAGGAGGTCAACTACA....................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
..............CAACTACATGCTGAAGAACAAGGGGC..................................................................................................................................................................................	26	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
......................TGCTGAAGAACAAGGGGCTGGAGGAC..........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................TGAAGAACAAGGGGCTGGAGGACA.........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................AAGAACAAGGGGCTGGAGG............................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..............CAACTACATGCTGAAGAACA........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................GAACAAGGGGCTGGAGGA...........................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................GCTGAAGAACAAGGGGCTGGA..............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GAGGAGGTCAACTACATGCTGA..............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................ATGCTGAAGAACAAGGGGCTGGAGGACA.........................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.CTGCCGAGGAGGTCAACTACATGCTGAAG............................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................CTACATGCTGAAGAACAAGGGGCTGGA..............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GAAGAACAAGGGGCTGGAGGA...........................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATATGCACAAATCAGCTCAA..	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....CGAGGAGGTCAACTACATGCT................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................GAACAAGGGGCTGGAGGAC..........................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................GAAGAACAAGGGGCTGGAG.............................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................CCTATAA-------CTGATC----TCCTTTGCTTGCA...................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..TGCCGAGGAGGTCAACTACATGCTGA..............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................TACATGCTGAAGAACAAGGGGCT.................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................ACATGCTGAAGAACAAGG.....................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............GTCAACTACATGCTGAAGAACAAGG.....................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAATATGCACAAATCAGCTCA...	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..TGCCGAGGAGGTCAACTACATGC.................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............AACTACATGCTGAAGAACAAGG.....................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................CATGCTGAAGAACAAGGGGCT.................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................ACTACATGCTGAAGAACAAGGGGCTGG...............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................TTCCCCCTGTTCACGGCTATCCACA........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................AACAAGGGGCTGGAGGAC..........................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............CAACTACATGCTGAAGAACAA.......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
ACTGCCGAGGAGGTCAACTACATGCTGAAA............................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
...GCCGAGGAGGTCAACTACATGC.................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GAAGAACAAGGGGCTGGAGGACA.........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ACTGCCGAGGAGGTGAACTATATGTTGAAGAACAAGGGTCTGGAGGACAAGTACGACTGATTTAACAAC--TAGGATTA--------------------------TAA--------A-----------A-TAGAATATATCTAACTGATT----CCCATCTATTGCAGATTCCCTCTATTCACGGCTATCCACAAAATATGCACAAATCAGCTTAAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACTGCCGAGGAGGTTAACTACATGCTTAAGAACAAGGGTCTAGAGGACAAGTACGTTTAAAATAGTAATGTAATGGTACTCT----------------------------------TA---------GG-TCTAAAA-------CGCCAC----TTTATTGATTGCAGATTCCCTCTGTTCACGGCTATCCACAAAATATGCACAAACCAGCTTAAGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTGCCGAGGAGGTGAACTACATGCTAAAGAACAAGGGCCTAGAGGACAAGTACGACTAGTTTTATAATCAAATGGTATTCT-------------------------TGATCT--------------AT-TCTACAA-------CAAATT----TTTTTTAATTTCAGATTTCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTTAAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACTGCCGAGGAGGTGAACTATATGCTGAAGAACAAGGGTCTAGAGGACAAGTACGACTGATCTTTTAAGCCAATGGTTTTCA----------------------------------AA---------AA-TTAATAA-------CAAACC----TTCATCGATTGCAGATTCCCCCTGTTCACGGCCATCCACAAAATATGCACAAATCAGCTTAAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGACTAGAAGACAAGTACGACTGATCTTATAAGACAATGTTGTTCA------A---------------------------AA------------TAAATAA-------CTAATC----TCCATCGATTGCAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTTAAGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACTGCCGAGGAGGTGAACTACATGCTTAAGAACAAGGGTTTAGAGGACAAGTACGAATTATTTTTGAACCCAATGGTTTTCG----------------------------------TA---------A--ATTAAAA-------AAGAAT----TTTATCGTTTACAGATTCCCCCTGTTCACCGCTATCCACAAAATATGCACACAACAGCTTAAAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTGCCGAGGAGGTGAACTACATGCTGAAGAACAAGGGACTGGAGGATAAGTATGGC--ATCTACA-----AATAATAATC--------------------ATTTTAA--------AG---------AA-ATATTAA-------CTAATC--TTTCTTTATATTACAGATTCCCCCTGTTCACGGCTATCCACAAAATATGCACAAATCAGCTTAAGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACTGCCGAGGAGGTCAACTACATGCTGAAGAACAAGGGGCTGGAGGACAAGTAAGCTTCAA------TATTAATAATTT-TG------A---------------------------AA---------CACTATTTAA-------CTGAAACCACTCTCTGCATTGCAGGTTTCCTCTGTTCACGGCTATCCACAAAATTTGCACAAATCAGCTCAAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................GAACAAGGGGCTGGAGGACA.........................................................................................................................................................................	20	1	5.00	5	2	0	0	0	1	2
......................TGCTGAAGAACAAGGGGCTGGAGGACA.........................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
..........................GAAGAACAAGGGGCTGGA..............................................................................................................................................................................	18	1	3.00	3	0	1	0	0	2	0
................................CAAGGGGCTGGAGGACAA........................................................................................................................................................................	18	1	3.00	3	2	0	1	0	0	0
.......................GCTGAAGAACAAGGGGCTGGAGGACA.........................................................................................................................................................................	26	1	2.00	2	1	0	0	0	0	1
..........................GAAGAACAAGGGGCTGGAGGA...........................................................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0
.............................................................................................................................................................................CTCTGTTCACGGCTATCCACA........................	21	1	2.00	2	0	0	0	0	0	2
................ACTACATGCTGAAGAACAAGGGGCT.................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	1	0
.........................TGAAGAACAAGGGGCTGGA..............................................................................................................................................................................	19	1	2.00	2	1	0	0	0	1	0
..............CAACTACATGCTGAAGAACAAGGGGCT.................................................................................................................................................................................	27	1	2.00	2	0	1	0	0	1	0
........................................................................................................................................................................GTTTCCTCTGTTCACGGCT...............................	19	1	2.00	2	1	0	0	0	0	1
...........GGTCAACTACATGCTGAAG............................................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0
........GGAGGTCAACTACATGCTGAAGA...........................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................AAATTTGCACAAATCAGCTCAAG.	23	1	1.00	1	0	0	0	0	0	1
.................CTACATGCTGAAGAACAAG......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...........................AAGAACAAGGGGCTGGAGGACA.........................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..TGCCGAGGAGGTCAACTACATGCTG...............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...GCCGAGGAGGTCAACTACATGCTGAA.............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................AGGTTTCCTCTGTTCACGGC................................	20	1	1.00	1	0	1	0	0	0	0
...GCCGAGGAGGTCAACTACATGCTGAAG............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
ACTGCCGAGGAGGTCAACT.......................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................AAGAACAAGGGGCTGGAGG............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................GCTGAAGAACAAGGGGCTGGA..............................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................GTTTCCTCTGTTCACGGCTATC............................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................TTTCCTCTGTTCACGGCTATC............................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................GTTCACGGCTATCCACAAAATTTGC................	25	1	1.00	1	1	0	0	0	0	0
......GAGGAGGTCAACTACATGCTGAAGAAC.........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
...........................AAGAACAAGGGGCTGGAGGA...........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.............................GAACAAGGGGCTGGAGGACAAGTTTC...................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................ACATGCTGAAGAACAAGGGGCTG................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................AGGGGCTGGAGGACAAGTT.....................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.................CTACATGCTGAAGAACAAGGGGCTG................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
...........GGTCAACTACATGCTGAAGA...........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
......GAGGAGGTCAACTACATGC.................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................ATCCACAAAATTTGCACAAAT..........	21	1	1.00	1	1	0	0	0	0	0
................ACTACATGCTGAAGAACAAG......................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........GGTCAACTACATGCTGAAGAAC.........................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................AAATTTGCACAAATCAGCTCA...	21	1	1.00	1	0	0	0	0	0	1
..................TACATGCTGAAGAACAAGG.....................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
......................TGCTGAAGAACAAGGGGCTGGAGGAC..........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....CGAGGAGGTCAACTACATGCTGAAG............................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
...........................AAGAACAAGGGGCTGGAGGACAAGTTT....................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................CTGAAGAACAAGGGGCTGGAG.............................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................ACAAGGGGCTGGAGGACA.........................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.......AGGAGGTCAACTACATGCTGAA.............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................TTCCTCTGTTCACGGCTATCC...........................	21	1	1.00	1	0	0	0	0	0	1
......GAGGAGGTCAACTACATGCTGAAGAACA........................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................CTGTTCACGGCTATCCACAA.......................	20	1	1.00	1	1	0	0	0	0	0
...........GGTCAACTACATGCTGAAGAACAA.......................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.........GAGGTCAACTACATGCTGAAGAACAA.......................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................GTTCACGGCTATCCACAAA......................	19	1	1.00	1	1	0	0	0	0	0
...............AACTACATGCTGAAGAACA........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
......................TGCTGAAGAACAAGGGGCTGGAGG............................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......GAGGAGGTCAACTACATGCT................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................TCTGTTCACGGCTATCCACAAA......................	22	1	1.00	1	1	0	0	0	0	0
...................................GGGGCTGGAGGACAAGTT.....................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0

droBip1

ACTGCCGAGGAGGTTAACTACATGCTGAAGAACAAGGGGCTGGAGGACAAGTAAGCTTT----------CCCATAAACATCA------A----------AT-----------------AC---TAAAGA-TTTAAAA-------C--ACC----ATCCATTTTTGCAGGTTTCCTCTGTTCACGGCTATCCACAAAATTTGCACAAATCAGCTCAAGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACTGCCGAACTGGTTCACATTTTACTCAAGAAAAAAGGATTGGTGGACAAGTGCGCTCGAGAGCCTTTTACTGGCATTTTCT------G---------------------------------------A-TACGTTACCCCT------GT----TTGTTTTTTTACAGATTTCCACTGTTTACAACGGTCTATAAAATCTGCA---------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

ACTGCCGAGGAAGTCAATTATATGTTGAAGAACAAGAAACTGGAGGATAAGTACGGAACACCCCACAAC--A---CCCTTCC----TAT-ATTCTATAT--------GTA---------T---TTATGA-TGTGTC---TTT------CT----CTTCTCTTTTCTAGATTCCCCCTGTTTACGGCCATTCATAAGATATGCACAAATCAGCTTAAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................CATAAGATATGCACAAATCAGCT.....	23	1	1.00	1	0	1	0	0	0	0
.............................GAACAAGAAACTGGAGGATA.........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................ATATGTTGAAGAACAAGAAACTGGAGG............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................ATTCCCCCTGTTTACGGCC...............................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................AGATATGCACAAATCAGC......	18	1	1.00	1	0	1	0	0	0	0
.......................GTTGAAGAACAAGAAACTGGAGGATAA........................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............................GAACAAGAAACTGGAGGAT..........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..........................GAAGAACAAGAAACTGGAG.............................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.........GAAGTCAATTATATGTTGAA.............................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0

droWil2

ACAGCCGAAGAGGTTAACTACATGCTGAAGAACAAGAAATTGGAGGATAAGTAAGAAGGAT-----AACCAAACAATATTTG------A---------------------------AATGATCTT------TTGTAA-------TTAATC--AATCGTTCCTTTACAGATTCCCCTTGTTCACGGCTATACACAAAATATGCACAAATCAGCTTAAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................TGCTGAAGAACAAGAAATT.................................................................................................................................................................................	19	1	3.00	3	2	0	0	1	0
.................CTACATGCTGAAGAACAAGA.....................................................................................................................................................................................	20	1	3.00	3	0	0	1	2	0
.................CTACATGCTGAAGAACAAG......................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
..............TAACTACATGCTGAAGAACA........................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
...............AACTACATGCTGAAGAAC.........................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
................ACTACATGCTGAAGAACA........................................................................................................................................................................................	18	1	2.00	2	0	0	1	1	0
....................................................................................................................................................................................................ATATGCACAAATCAGCTTA...	19	1	2.00	2	0	0	0	2	0
...GCCGAAGAGGTTAACTACATGCTGAA.............................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...................ACATGCTGAAGAACAAGA.....................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.................CTACATGCTGAAGAACAAGAAATT.................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.....................ATGCTGAAGAACAAGAAATTGGAG.............................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.....................................................................................................................................GTAA-------TTAATC--AATCGTTCCTTTA.....................................................	23	1	1.00	1	0	0	0	1	0
.....................ATGCTGAAGAACAAGAAATT.................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........AGGTTAACTACATGCTGAAGAACAA.......................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................AAAATATGCACAAATCAGCTT....	21	1	1.00	1	0	0	0	1	0
.............TTAACTACATGCTGAAGAACA........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
...................ACATGCTGAAGAACAAGAAAT..................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
........................CTGAAGAACAAGAAATTGGA..............................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................TTCCCCTTGTTCACGGCTATACA..........................	23	1	1.00	1	0	1	0	0	0
...................ACATGCTGAAGAACAAGAAATT.................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...............AACTACATGCTGAAGAACAAGA.....................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.............TTAACTACATGCTGAAGA...........................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............GTTAACTACATGCTGAAG............................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................CCCCTTGTTCACGGCTATACACAAAAT....................	27	1	1.00	1	0	0	0	1	0
......................TGCTGAAGAACAAGAAATTGGAG.............................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..............TAACTACATGCTGAAGAAC.........................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......GAAGAGGTTAACTACATGCTGAAGA...........................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..................TACATGCTGAAGAACAAGAAATTGGA..............................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
............GTTAACTACATGCTGAAGAACAA.......................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................TCACGGCTATACACAAAATATGCACA.............	26	1	1.00	1	0	0	0	1	0
...........GGTTAACTACATGCTGAAGAAC.........................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.............TTAACTACATGCTGAAGAAC.........................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................TATACACAAAATATGCACAAATCAGCT.....	27	1	1.00	1	0	0	1	0	0
...............AACTACATGCTGAAGAACA........................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................TGCTGAAGAACAAGAAATTGGA..............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................AATATGCACAAATCAGCTT....	19	1	1.00	1	0	0	0	1	0
......................TGCTGAAGAACAAGAAATTGGAGGA...........................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
.....CGAAGAGGTTAACTACATGCT................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.................CTACATGCTGAAGAACAAGAAATTGGA..............................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...............AACTACATGCTGAAGAACAAGAAATTG................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..............TAACTACATGCTGAAGAACAAGAAAT..................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
................ACTACATGCTGAAGAACAA.......................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..............TAACTACATGCTGAAGAA..........................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0

droVir3

ACTGCCGAGGAGGTTAACTATATGTTGAAAAACAAAGGCCTGGAGGATAAGTGCGTGCCACTTTGTATATC----------CAAACTAA-AATC-------GTA---------------T---TTAA---CAAATTGTTTAT------AT----TTATATACTTGCAGATTCCCATTGTTCACCGCCATACACAAAATTTGCACAAATCAGCTTAAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................ATTGTTCACCGCCATACACA........................	20	2	2.50	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACTGCCGAGGAGGTTAACT.......................................................................................................................................................................................................	19	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ACTGCCGAGGAGGTTAAC........................................................................................................................................................................................................	18	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACAAAGGCCTGGAGGATA.........................................................................................................................................................................	18	2	1.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CCGCCATACACAAAATTTGCACA.............	23	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTTGAAAAACAAAGGCCTGGAGGAT..........................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AAAACAAAGGCCTGGAGG............................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CTGCCGAGGAGGTTAACTA......................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAAAAACAAAGGCCTGGA..............................................................................................................................................................................	18	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CCCATTGTTCACCGCCATACACA........................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GAGGTTAACTATATGTTGAAAAACA........................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAAAAACAAAGGCCTGGAG.............................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTCACCGCCATACACAAAA.....................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CACAAAATTTGCACAAATCAGC......	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AAAGGCCTGGAGGATAAGTGC....................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGCCGAGGAGGTTAACTAT.....................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATATGTTGAAAAACAAAGGCCTGGA..............................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ACAAAATTTGCACAAATCAGCTTAA..	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CAAAGGCCTGGAGGATAA........................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CGCCATACACAAAATTTGCA...............	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGAAAAACAAAGGCCTGGAGG............................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TACACAAAATTTGCACAAATCAGCT.....	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGTTAACTATATGTTGAAA............................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AAGGCCTGGAGGATAAGTGCGTGC................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTTGAAAAACAAAGGCCTGGAGGATAA........................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATATGTTGAAAAACAAAGGCCT.................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AATTTGCACAAATCAGCTTA...	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TACACAAAATTTGCACAAATCAGCTTA...	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................ATTGTTCACCGCCATACACAA.......................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAACAAAGGCCTGGAGGATA.........................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AATTTGCACAAATCAGCTT....	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CATTGTTCACCGCCATACA..........................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TATATGTTGAAAAACAAAGGCCTGGA..............................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................ACTATATGTTGAAAAACAAAGGC...................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AAAATTTGCACAAATCAGCTTA...	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTCACCGCCATACACA........................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TCCCATTGTTCACCGCCATACACAAA......................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATATGTTGAAAAACAAAGGCCTG................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AAAATTTGCACAAATCAGCTTAA..	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAAAAACAAAGGCCTGGAGGATAA........................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTAACTATATGTTGAAAAAC.........................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGGAGGTTAACTATATGTTGAAAA...........................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TGTTGAAAAACAAAGGCCTGGAGGA...........................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTCACCGCCATACACAAAAT....................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAAAAACAAAGGCCTGGAGGAT..........................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTGAAAAACAAAGGCCTGGAGG............................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CATTGTTCACCGCCATACACA........................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATATGTTGAAAAACAAAGGCC..................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACAAAGGCCTGGAGGATAA........................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GTTCACCGCCATACACAAA......................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTGTTCACCGCCATACACAAAATT...................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ATATGTTGAAAAACAAAGGC...................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CTGCCGAGGAGGTTAACT.......................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CAAAATTTGCACAAATCAGCTTA...	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGAAAAACAAAGGCCTGGAGGATAAT.......................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AAATTTGCACAAATCAGCTT....	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACTGCCGAGGAAGTCAACTATATGTTGAAGAACAAAGGCTTGGAGGATAAGTAAGCTCGAAAAAGCTATACA---AGATTCA------AATATCAGTAT--------GTATCTATATA------------TATTTAA-------CAAAAT----TCAATTTCTTGCAGATTCCCACTGTTCACAGCTATACATAAAATTTGCACAAATCAGCTTAAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................ATTTGCACAAATCAGCTTA...	19	1	1.00	1	1	0	0	0	0	0
.............................GAACAAAGGCTTGGAGGATA.........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................TTGAAGAACAAAGGCTTGGA..............................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................AACAAAGGCTTGGAGGATA.........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...................ATATGTTGAAGAACAAAGGCTTGGAG.............................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............CAACTATATGTTGAAGAACAAAGGCTTG................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................GAAGAACAAAGGCTTGGAG.............................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................ATTCCCACTGTTCACAGCT...............................	19	1	1.00	1	1	0	0	0	0	0

droGri2

ACGGCAGAGGAGGTCAACTACATGTTGAAAAACAAAGGCTTGGAGGACAAGTATGCTTAGGCTAAACATTTCAG---GCCTA-----------------------ATTTATTTAT-TA------------TATTAACCAAAT------AT----CAACTTACTTTCAGATTCCCCCTATTTACTGCCATACACAAAATTTGCACAAATCAGCTTAAGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-6.7	-6.5	-6.4	-6.4

dsi_6610

2l:5742230-5742297 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads