ID:

dsi_6599

 Coordinate:

3r:22001164-22001377 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.0 -20.0 -20.0 -20.0

Flybase annnotation

intron [3r_22001421_22001483_-]; CDS [3r_22001389_22001420_-]; three_prime_UTR [3r_22000538_22001388_-]; exon [3r_22000538_22001420_-]

No Repeatable elements found

Sense Strand Reads

-------###################################################################################################################################################################################################################################################################################################################
CCTGCAGCGCGCGGCAAACTCTTTGGCAGCCGGAAATGAAACCCGATAAGGTAATCAGCCCCTGAACACAATCAGCTTCCCCTCAGCGTGTACCAATTGTGATGAGCAAAGTTAGATTTAAGATATTTCGTTTTGTTTCGCTTGACTTGCGTGCCCCCTTGCTTGAGCATTATGTATACGAGTACGCTAATTGATTAATGCAGCTGCAAAGCGTCTTTGAAAATGTTAATTTAAGCCTAATTAAAAATTAATTGTAATTTAAAGCAGGACCCTTAATATTCGCATCGAACGCGCCTGAGCGTTCGTTCGGCGCA
***************************************************************************************************............((.......(((.....((((((((...((((((...((((((.....(((.(((...))).))).....)))))).......)))).))....)))))))))))....))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................CAAAGCGTCTTTGAAAC........................................................................................... 17 1 6 6.00 36 35 0 0 0 0 1
...............................................................................................................................................................................................................AAAGCGTCTTTGAAAC........................................................................................... 16 1 11 2.73 30 30 0 0 0 0 0
...............................................................................................................................................................................................................AAAGCGTCTTTGAAACT.......................................................................................... 17 1 8 1.13 9 9 0 0 0 0 0
...............................................................................................................................................................................................................AAAGCGTCTTTGAAA............................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................CAAAGCGTCTTTGAAA............................................................................................ 16 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................................................................TGTAATTTAAAGCAGGACCCTTAATA.................................... 26 0 1 1.00 1 0 0 0 0 1 0
............................................................................................................................................................................................................TGCAAAGCGTCTTTGAA............................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGATGAGCAAAGTTAGATTTAAGA............................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..............................................................TGAACACAATCAGCTTCCCCTCAGCGAG................................................................................................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................CTTGCTTGAGCATTCTGTATACGAGTA.................................................................................................................................. 27 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................ATCGAACGCGCCTGAGCGTT........... 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TTCGCATCGAACGCGCCTGAGCGTT........... 25 0 1 1.00 1 0 1 0 0 0 0
........................................ACCTGAGAGGGTAATCAGCC.............................................................................................................................................................................................................................................................. 20 3 2 0.50 1 0 0 1 0 0 0
............................................................................................................................................................................................................TTCAAAGCGTCTTTGAA............................................................................................. 17 1 10 0.50 5 5 0 0 0 0 0
................................................................................................................................................................................................................AAGCGTCTTTGAAAC........................................................................................... 15 1 15 0.47 7 6 1 0 0 0 0
.........................................CCTGATAGGGTAATCGGCC.............................................................................................................................................................................................................................................................. 19 3 5 0.40 2 0 0 2 0 0 0
.............................................................................................................................................................................................................TCAAAGCGTCTTTGAAA............................................................................................ 17 1 11 0.36 4 4 0 0 0 0 0
.........................................CCTGAGAGGGTAATCAGCC.............................................................................................................................................................................................................................................................. 19 3 6 0.33 2 0 0 2 0 0 0
.............................................................................................................................................................................................................TCAAAGCGTCTTTGA.............................................................................................. 15 1 18 0.28 5 4 1 0 0 0 0
................................................................................................................................................................................................................AAGCGTCTTTGAAACT.......................................................................................... 16 1 9 0.22 2 2 0 0 0 0 0
..............................................................................................................................................................................................................CAAAGCGTCTTTGAAACT.......................................................................................... 18 1 5 0.20 1 1 0 0 0 0 0
.........................................CCCGAGAGGGTAATCGGCC.............................................................................................................................................................................................................................................................. 19 3 5 0.20 1 0 0 1 0 0 0
............................................................................................................................................................................................................TTCAAAGCGTCTTTGA.............................................................................................. 16 1 11 0.18 2 1 0 0 1 0 0
..................................GATGAACCCCGATAAGG....................................................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 1
...............................................................................CCCTAAGCGTGTACTA........................................................................................................................................................................................................................... 16 2 14 0.14 2 0 2 0 0 0 0
.............................................................................................................................................................................................................TCAAAGCGTCTTTGAA............................................................................................. 16 1 14 0.14 2 2 0 0 0 0 0
..................................................................................................................................................................................................TTAATGCAGCTGGCAAGCG..................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0
............................................................................................................................................................................................................TTCAAAGCGTCTTTGAAA............................................................................................ 18 1 9 0.11 1 1 0 0 0 0 0
......................TTGGTAGCCGGGAATGAA.................................................................................................................................................................................................................................................................................. 18 2 9 0.11 1 1 0 0 0 0 0
............................................................................................................................................................................................................TTCAAAGCGTCTTTGACA............................................................................................ 18 2 12 0.08 1 1 0 0 0 0 0
............................................................................................................................................................................................................TTCAAAGCGTCTTCGAAA............................................................................................ 18 2 16 0.06 1 1 0 0 0 0 0
...............................................................................................................................................................................................................AAAGCGTCTTTGAAACC.......................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................................ATCCAAAGCGTCTTTGAAAC........................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................ATGAACCTGAATATTCGCA.............................. 19 3 20 0.05 1 1 0 0 0 0 0
...........CGGCTAACTCTTTGCCA.............................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GGACGTCGCGCGCCGTTTGAGAAACCGTCGGCCTTTACTTTGGGCTATTCCATTAGTCGGGGACTTGTGTTAGTCGAAGGGGAGTCGCACATGGTTAACACTACTCGTTTCAATCTAAATTCTATAAAGCAAAACAAAGCGAACTGAACGCACGGGGGAACGAACTCGTAATACATATGCTCATGCGATTAACTAATTACGTCGACGTTTCGCAGAAACTTTTACAATTAAATTCGGATTAATTTTTAATTAACATTAAATTTCGTCCTGGGAATTATAAGCGTAGCTTGCGCGGACTCGCAAGCAAGCCGCGT
********************************************************************************************............((.......(((.....((((((((...((((((...((((((.....(((.(((...))).))).....)))))).......)))).))....)))))))))))....))*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.....................................................................................................................................................................................................................................ACCTTCGGATTCATTTTTAAT................................................................ 21 3 11 0.27 3 3 0 0 0 0
...............................................................................GGGAGGCGCAGATGGTAAAC....................................................................................................................................................................................................................... 20 3 11 0.09 1 0 1 0 0 0
...............................................................................................TGACACTACTAGTTTCA.......................................................................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0
.........................................................................................................CGTTTCGAGCTAGATTCTA.............................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 1 0
......................................................................................................................................................................................................................................ACTTCGGAATAATTTTTAA................................................................. 19 2 14 0.07 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................CTCGCAAGCAAGACTC.. 16 2 17 0.06 1 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................TCGCAAGCAAGTCTCG. 16 2 19 0.05 1 0 0 1 0 0
......................................................................................................................................................................................................................................................TAATTAACCTTAGATGTCGT................................................ 20 3 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................................AATTAACTTCGGAGTAACTT..................................................................... 20 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:22001114-22001427 - dsi_6599 CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ATCAGCCCC--T-------------------------------------------------GAACA----------------------CAATCAGC--TTCCC--CTCAGCGTGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGA-TTTA-----------AGATATTTCGTTTTGTTTCG-----------------------------CTTGACTTGCGT---------GCCCCCTTGCTTGAGCATTA---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTGCAAAGCGT-CTTTGAAAATGTTAATTTAAGCCTAATTAAAAATTAATTGTAATTTAAAGCAGGA-CCC-TTA-ATA-----------------------------------------TTCGCATCGAACGCGC-------CTGAGCGTT-CGTTCGGCGCA
droSec2 scaffold_13:1315441-1315754 - CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCAGCCCC--T-------------------------------------------------GAACA----------------------CAATCAGC--TTCCC--CTCAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGA-TTTA-----------AGATATTTCGTTTTGTTTCG-----------------------------CTTGACTTGCGT---------GCCCCCTTGCTTGAGCATTT---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTGCAAAGCGT-CTTTGAAAATGTTAATTTAAGCCTAATTAAAAATTAATTGTAATTTAAAGCAGGA-CCC-TTA-ATA-----------------------------------------TTCGCATCGAACGCGC-------CTGAGCGTT-CGTTCGGCGCA
dm3 chr3R:22541467-22541779 - CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATTAGGTA---ACCAGCCCC--T-------------------------------------------------GAATA----------------------CAATCAGC--TTCCC--TTCAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGAGTTTA-----------AGATATTTCGTTTTGTTTCG-----------------------------CTTGACTTGCGT---------GCCCCCTTGCCTGAGCATTC---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTCCAAAGCGT-CTTTGAAAATGTTAATTTAAGCCTAATTAAAAATTAATTGTAATTTAAAGCAGGA-CCC-TTA-ATA-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------T-CGTTCGGCGCA
droEre2 scaffold_4820:5509761-5510071 + CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCAGCCCC--T-------------------------------------------------GAACA----------------------CAATCAGC--TTCCC--CACAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGA-TTTA-----------AGATTTTTCGTTTTATTTCG-----------------------------CTTGACTTGCGT---------GCCCCTTTCCTTCAGCATTT---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTCTAAAGCGT-CTTTGAAAATGTACATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGC-GAA-CCC-TTA-ATA-----------------------------------------TTCGCATCGAATGCCTCTGC-GT--------T-CGTTCGGCGCA
droYak3 3R:23954676-23954987 + CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCAGCCCC--T-------------------------------------------------GAACA----------------------CAATCAGC--TTCCC--CTCAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGT-TTTA-----------AGATATTTCGTTTTGTTTCG-----------------------------CTTGACTGGCGT---------GCCCCCTTTATTGAGCATTC---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTCTAAAGCGT-CTTTGAAAATGTTAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCC-TTA-ATA-----------------------------------------TTCGCATCGAATGCTTGTGC-GT--------T-CGTTCGGCGCA
droEug1 scf7180000409682:48332-48646 + CAT---GCAGCGCGCGGAAAACTCTTTGGCAGCC---GGAAATGAAACA--------CGATAAGGTA---ACCAGCCCCCAT-------------------------------------------------GAACA----------------------CCATCAGC--TTCCC--CTCAGCAAGTA---------------------------CCA-ATTGTGATGAG--AAAAG----TTAGG-TTTA-----------AGCTTTTTCATTTTGTTTAG-----------------------------CGTGGCTTGCGTT--------GCCCGTTTCCTTGACCATTC---------------TGTATACGAG--TG-CGCTAATTGA-TTCATGCA---GCTCTTAAGCGT-CTTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAACAGGT-CTC-TCA-ATT-----------------------------------------GTTGCCTCGAATGTTTCTGC-GT--------T-CATTCGGCGCA
droBia1 scf7180000302113:2788332-2788638 - CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---GCCCGCCC--------------------------------------------------TCCGAAC-------------------------ATCAGC--TTCCC--CTCAGCGAATA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGA-TTTA-----------AGCATTATCGTTTTGTGCCG-----------------------------CTT-----GCGTT--------GGCCCTTGCCTTGACCATTC---------------TGTATACGAG--TA-CGCTAATTGA-TTCATGCA---GCTGCTAAGCGT-CGTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-GCC-TCA-ATT-----------------------------------------GTCGCGTAGCATGTTTTTGC-GCCTG--------TTTCGGCGCA
droTak1 scf7180000415286:565008-565297 - CCA---ACAGCGCGCGGCAAACTCTTCGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCCGTCT-------------------------------------------------------AC-----------------------CCATTATC--TTCCCAACCCAGCGAATA--------------------------CCCA-ATTGTGATGAG--CCAAG----TTAGA-TTTA-----------AGCACTTTCGTTTTGTTGCC-----------------------------CTT------------------TTCCTTTTCCTTGACCATTC---------------TGTATACGAG--TA-CGCTAATTGA-TTCATGCA---GCTCTTAAGCGT-CTTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCCGTCA-ATT-----------------------------------------GTCGCGTCGAATGTT----------------------TGGCGCA
droEle1 scf7180000491280:568466-568781 - CCA---ACAGCGCGCGG------------CAGTC---GGAAATGATGCC--------CGATAAAGTATAAACAAGAAC--------------------------------------------------CCCAAAC-------------------------ATCAGC--TTCCC--CTCAGCGAGTA---------------------------CCG-ATTGTGATGAG--CAAAG----TAAGA-TTTA-----------AGCATTTTCGTTTTGTTTCG-----------------------------CTCGGCTTGCGTT--------AGTCGTTTCCTTGACCATTTTGC---ATTAATGCCTGTATACGAG--TA-CGCTAATTGA-TTCATACG---GCTCTTAAGCGT-CTTTGTAAATGTAAACTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCC-TCA-ATT-----------------------------------------GTCGCGTCGAATGTTTGTGC-GC------GAC-GGTTCGGCGCA
droRho1 scf7180000778271:212476-212797 - CCT---GCAGCGCGCGGCAAGCTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCAGCAC--------------------------------------------------CCCAAACA----------------------CCGTCAGC--TTCCC--CTAAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGG-TTTA-----------TGATTTTTCGTTTTGTTTCG-----------------------------CTCGGCTTGCGTT--------ACTCGTTTCCTTGACCATTTTGC---ATTAATGTCTGTATACGAG--TA-CGCTAATTGA-TTCATGCA---GCTCTTAAGTGT-CTTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCC-TCA-ATT-----------------------------------------GTCGCGTCGAATGTTTGTAC--------------GTTCGGCGCA
droFic1 scf7180000454055:2435785-2436092 - CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAC----------------------------------------------------------------------CA----------------------CCTTCAGC--TTCCC--CTCAGCGACTA---------------------------CCG-ATTGTGATGAG--CAAAG----TTAGG-TTTA-----------AGCTTTTTCGTTTTGTTTCG-----------------------------ATTGGCTTCCGT---------TGCCGTTTCCTTGACCATTTTGC---ATTAATGCCAGTATACGAG--TG-CGCTAATTGA-TTCATGCA---CCTCTTAAGCGT-CTTTCTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCC-TCA-ATT-----------------------------------------GTCGCTTCGAATGTTTCTGA-GC--------C-CGTTCGGCGCA
droKik1 scf7180000302253:150883-151208 + CCTCTTTCAGCTCGTGGCAAACTCTTTGGCAGCC---GGAAATGAAAGGCTAGGACACGACACGGCT---AGGAG---------------------------------------------------------ACCA----------------------GAGCCAGC--TTCCC-----------------------------------------CG-AATGTGATGAGAGCGTGG----ATAGGTGTTA-----------AGTATTTTGGTTTTGTTCCC-----------ATTTTTTCAGTTTCATTGCTTGT---------------------TTTCCTTGACCGCTCGCT---AGA--------AAGGCGTG--CA-CGCTAATTGA-TTCATGCA---GCTGCCAAGCGT-CTTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAACCGGGT-CCC-TCA-ATT-----------------------------------------GCCGCCTAGAATGTCTGCTTTGTCTGT-TGCT-TGTTCGGCGCA
droAna3 scaffold_13340:16793401-16793727 + CCT---GCAGCGCGCGGCAAACTTTTTGGCAGCC---GGAAATGAAACC--------CGATACGGTT---ACTGGCT----------------ACCGGCTTC----------------------------------TGCCCACAACCCACCGTTCATT-CAAAAGT--TC-CC-----CGAGAGTA---------------------------CCT-ATTGTGATGAG--AAAAG----TTCGA-TTTA-----------AGATTCTTCGTTGTGTTTCG-----------------------------TTT------------------------CTTCCTGGCCGTTCTGC---ATTCCTGTGTGTATACGAG--TA-CACTAATTGA-TTCATGCA---GTCTTTAAGCTGCTTTTGTAAATGTAAATTTAAGGCTAATTAAAATTTAATTGTAATTTAAAACGGGC-CCTCTCA-ATT-----------------------------------------G-CGCTTCGAACGTCAAA-----CTG------GTGTACGTCGCA
droBip1 scf7180000396424:308473-308826 + CCT---GCAGCGCGCGGAAAACTTTTTGGCAGCC---GGAAATGAAACC--------CGACACGGTT---ACTGGTTCC--TGGCTACTGGCTACCGGCTCC----------------------------------CGCCCACAACCCACCGCCCATT-CAAAAGT--TCCCC-----CGGGAGTA---------------------------CCT-ATTGTGATGAG--TAAAGATTCTTCGA-TTTA-----------AGATTCTTCGTTTTGTTTCG-----------------------------TTT------------------------CTCTCTGACCGTTCTGC---ATTCCTGTGTGTATACGAG--TA-CACTAATTGA-TTCATGCA---GTCCTTAAGCTGCTACTGTAAATGTAAAT-TAAGGCTAATTAAAAATTAATTGTAATTTAAAACGGGC-CCC-TCA-ATTGCGATGCGACCG-----------------------------TTCG-ATCGAACGTAA-------CTG------GTGTACGGCGCA
dp5 2:10559990-10560347 - CCT---GCAGCGCGCGGCAAACTTTTTGGCAGCC---GGAAATGAAACT--------CGATATGGCT---ACTTC----CA-------------CCGA----ATCAGCACTCCACAGGCGTACAGCCCACCAGGC-------------------------ACCAGCCTTCCCC--CTCAACGAGTA---------------------------TCA-ATTGTGATGAGAGCAAA-T---------GTTAG-------------------GTTTCGTTTCGCTCCCCAAACT------------------------------------------------GTTGACCATTCTGC---AGTACTGCGTGTATACGAG--CAAAGATAATTGAATTTGTGCA---GCTCTGAAGCTA-CTTTGTTCATTTAAATTTAAGGCTAATTAAAAGTTAATTGTAAGTTAAAGCG--TTCC-G-CGGCCGGCCATTCGCCCATTCGGCCATCGACAGTCGT-------------------AATGTTTACGC-GGCCG------GAACACAGCGCA
droPer2 scaffold_0:9920737-9921093 + CCT---GTAGCGCGCGGCAAACTTTTTGGCAGCC---GGAAATGAAACT--------CGATATGGCT---ACTTC----CA-------------CCGA----ATCAGCACTCCACAGGCGCACAGCCCACCAAGC-------------------------ATCGGCCTTCCCC--CTCAACGAGTA---------------------------TCA-ATTGTGATGAGAGCAAA-T---------GTTAG-------------------GTTTCGTTTCGCTCCCCAAACT------------------------------------------------GTTGACCATTCTGC---AGTACTGCGTGTATACGAG--CA-AGATAATTGAATTTGTGCA---GCTCTGAAGCTA-CTTTGTTCATTTAAATTTAAGGCTAATTAAAAGTTAATTGTAATTTAAAGCG--TTCC-G-CGGCCGGCCATTCGCCCATTCGGCCATCGAAAGTCGT-------------------AATGTTTACGC-GGCCG------GAACACAGCGCA
droWil2 scf2_1100000004943:6640643-6641001 + TAC---ACAGCGCGAGGCAAACTTTTTGGCAGCC---GGAAATGAAACC--------CGATATGGTC---ACTTC----CA-------------------------------------------------------------T-----------------AAAAGT--TA-CT--CCCACCGAGCAAATCATTTCATCTTCCCCATCTCTTTCCCG-ATTGTGATGAG--CAAAAT---------GTTAA----GTTTTAAGT---TTCGTTTTCCTTTC-----------------------------CTTAGTTTATGTTTTCGTTTCGTTCGCTTCCTTGACAATTT------------CTTTGTATACGAGTTTA-TGTTAATCGATTTCATGCAGCAGCTTTTAAGCTA-CTATGTAAATTTAAATTTAAGTCTAATTAAAAATTAATTGTAATTTAAAGGTGGC-CCA--CGGCC-----------TCTTCA--AATAGCCAATTGCATTGTTTATATTCGCATCG--------------------------CCTCGCGCA
droVir3 scaffold_12822:3361021-3361288 + CTT---TTAGCAAGAGGCAATCTTTTTGGTAGGC---GGCCTTAGA--------------CAATGCC---ACGAC--------------------------------------------------------------GCCCACAATAAATTGTT----CCAACGGC--TTCCC--ATCTACCTGTA---------------------------CCG-AATGTGATGCG--CAAAAA---------GTTGGGTGTGCTCCAAGT---TTCGCTC----------GCCTCTTTGTT------------------------------------CCTCG---------T--TATTGC---ATTGAACATTGTA--------TA-CGTTAATTGA-ATCCATCT---ACTCTTAAGATA-CTTGTTTAATTAGAATTTAAGCTCAATTAAAATTTAATTGTAATTTAAG-CCGGC-TGC-TCA-AT--------------------------------------------------------------------------------------
droMoj3 scaffold_6540:16683148-16683398 + TTT---TTAGCAAGGAGCAATCTTTTTGGCAGAC---GGCAGTAAAGCCTT------AGACAATGTG---CTTA--------------------------------------------------------------CGCCCACAAAAAACTGTT----CCAACGGC--TTCCC--ATTTTCGAATA---------------------------CCA-AATGTGATGCG--CAAAA----CT-------------------------TTCGCCC----------GCCTTCCTATTTCTCAGATATT----------------------------------GTTG-----------TCA-------TTGAACATGTA--TA-CGTTAACTTAATCCATATA---GTCTTAAGATAA-ATATGTAATT-AGAATTGCAGCTCAATTAAAAGATAATTTTAATTCAAAG------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:1004291-1004545 + TTT---ATAGCGCGAGGCAATCTTTTTGGCGGCAGGCGGAAATGAAACT---------GCG------------A--------------------------------------------------------------CGCCCACAATAAAATGTT----CCAACGGC--TTCCC--TTCAACCAGCA---------------------------ACAGATTGTGATGCG--CAAAAA---------GTTGG-CACTCTTCAAGT---TTCGTTG----------GCCTTTTTGCT---------------------------------------------TTTCACCATTG--CTTCA-------CAGACTGCGCA--TA-CCTTAATTAAATGCAT--A---CTTCTAAAGCTA-TTTTGTAAATTTAAGTGTAAGCTTGATTAAACCTTAATTGTAATTTAAA-------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ATCAGCCCC--T-------------------------------------------------GAACA----------------------CAATCAGC--TTCCC--CTCAGCGTGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGA-TTTA-----------AGATATTTCGTTTTGTTTCG-----------------------------CTTGACTTGCGT---------GCCCCCTTGCTTGAGCATTA---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTGCAAAGCGT-CTTTGAAAATGTTAATTTAAGCCTAATTAAAAATTAATTGTAATTTAAAGCAGGA-CCC-TTA-ATA-----------------------------------------TTCGCATCGAACGCGC-------CTGAGCGTT-CGTTCGGCGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCGT-CTTTGAAAC...............................................................................................................................................1766.0036000000000135000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGT-CTTTGAAAC...............................................................................................................................................16112.7330000000000030000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGT-CTTTGAAA................................................................................................................................................1511.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCGT-CTTTGAAA................................................................................................................................................1611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATTTAAAGCAGGA-CCC-TTA-ATA-----------------------------------------............................................2611.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGCGT-CTTTGAA.................................................................................................................................................1711.00100000000001000000
.............................................................................................................................................................................................................................TGATGAG--CAAAG----TTAGA-TTTA-----------AGA................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAACGCGC-------CTGAGCGTT-...........2011.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCATCGAACGCGC-------CTGAGCGTT-...........2511.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGT-CTTTGAAAC...............................................................................................................................................15150.47700000001006000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCGT-CTTTGAAACC..............................................................................................................................................17200.05100000000001000000
droSec2
CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCAGCCCC--T-------------------------------------------------GAACA----------------------CAATCAGC--TTCCC--CTCAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGA-TTTA-----------AGATATTTCGTTTTGTTTCG-----------------------------CTTGACTTGCGT---------GCCCCCTTGCTTGAGCATTT---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTGCAAAGCGT-CTTTGAAAATGTTAATTTAAGCCTAATTAAAAATTAATTGTAATTTAAAGCAGGA-CCC-TTA-ATA-----------------------------------------TTCGCATCGAACGCGC-------CTGAGCGTT-CGTTCGGCGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATTAGGTA---ACCAGCCCC--T-------------------------------------------------GAATA----------------------CAATCAGC--TTCCC--TTCAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGAGTTTA-----------AGATATTTCGTTTTGTTTCG-----------------------------CTTGACTTGCGT---------GCCCCCTTGCCTGAGCATTC---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTCCAAAGCGT-CTTTGAAAATGTTAATTTAAGCCTAATTAAAAATTAATTGTAATTTAAAGCAGGA-CCC-TTA-ATA-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------T-CGTTCGGCGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................TAATTGA-TTAATGCA---GCTCCAAAGCGT-C.......................................................................................................................................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGGCCTGTGC-GT--------T-CGTTCGGCGCA2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------T-...........2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TGTATACGAG--TA-CGCTAATTGA-T...............................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------T-...........2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AATTGA-TTAATGCA---GCTCCAAAGCGT-C.......................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCATCGAAGGCCTGTGC-GT--------T-CGTT.......2613.0030000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGAAGGCCTGTGC-GT--------T-CGTTCGGC...2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGC-GT--------T-CGTTCGGCGCA2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------T-CG.........2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
.............................................................................................................................................................................................................................TGATGAG--CAAAG----TTAGAGTTTA-----------AGATAT.............................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
..............................................................................................................................................................................................................................................................................................................................................CCTTGCCTGAGCATTC---------------TGTATACGAG--..............................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA-CCC-TTA-ATA-----------------------------------------TTCGCATCGAAGGCC.............................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AGC--TTCCC--TTCAGCGAGTA---------------------------CC................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGCC---GGAAATGAAACC--------CGATTAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGCCTGAGCATTC---------------TGTATACGAG--TA-CGC........................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCATCGAAGGCCTGTGC-GT--------T-CGT........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-ATA-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------T-...........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................ATTGA-TTAATGCA---GCTCCAAAGCGT-C.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................CAAACTCTTTGGCAGCC---GGAAATGAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAATTTAAAGCAGGA-CCC-TTA-A.......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGCC---GGAAATGAAACC--------CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TAATTGA-TTAATGCA---GCTCCAAAGCG..........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTTGGCAGCC---GGAAATGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................ACTCTTTGGCAGCC---GGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AATGCA---GCTCCAAAGCGT-CTTTGAA.................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAAGCAGGA-CCC-TTA-ATA-----------------------------------------TTCGCA......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCATCGAAGGCCTGTGC-GT--------T-CG.........2511.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC-TTA-ATA-----------------------------------------TTCGCATCGAAGGCCTG...........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGAAGGCCTGTGC-GT--------T-CGTTCGGC...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCTGTGC-GT--------T-CGTTCGGCG..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GT---------GCCCCCTTGCCTGAGCATTC---------------TG........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------T-C..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TGCGT---------GCCCCCTTGCCTGAGC.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CTGAGCATTC---------------TGTATACGAG--TA-CGCT.......................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------TTCGCATCGAAGGCCTGTGC-.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------T-...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTTTGGCAGCC---GGAAATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TAATGCA---GCTCCAAAGCGT-CTTTGAAAA...............................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................TGCCTGAGCATTC---------------TGTATACGA.................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CCTGAGCATTC---------------TGTATACGAG--TA-CGC........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-ATA-----------------------------------------TTCGCATCGAAGGCC.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................AAACTCTTTGGCAGCC---GGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAATTAATTGTAATTTAAAGCAGGA-................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCAGCC---GGAAATGAAACC--------CGATTAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CCC-TTA-ATA-----------------------------------------TTCGCATCGAAGGCCTG...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGTTAATTTAAGCCTAATTAAAAA.......................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GATATTTCGTTTTGTTTCG-----------------------------CTTGACT...........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATTTAAAGCAGGA-CCC-TTA-ATA-----------------------------------------............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CC--T-------------------------------------------------GAATA----------------------CAATCAGC--TTCCC--TTCAGCG.................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-ATA-----------------------------------------TTCGCATCGAAGGCCT............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TGTGATGAG--CAAAG----TTAGAGTTTA-----------AGA................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TTC---------------TGTATACGAG--TA-CGCTAATTGA-T...............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAATTAATTGTAATTTAAAGCAGGA-CC..............................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTGCGT---------GCCCCCTTGCCTGAGC.............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTAATTTAAGCCTAATTAAAAAT......................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GATGAG--CAAAG----TTAGAGTTTA-----------AGATA..............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAAGCGT-CTTTGAAAATGTTAATT.......................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-ATA-----------------------------------------TTCGCATCGAAGGCCTGTG.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------TTCGCATCGAAGGCCTGT..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGGCCTGTGC-GT--------T-CGTTCGGCGC.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................CTGAGCATTC---------------TGTATACGAG--..............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAGGCCTGTGC-GT--------T-CGTTCGGCGC.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------TTCGCATCGAAGGCCTGTGC-GT--------.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................A----------------------CAATCAGC--TTCCC--TTCAGCGA................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TGAGCATTC---------------TGTATACGAG--TA-CGCT.......................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-ATA-----------------------------------------TTCGCATCGAAGGCCTGT..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................ACGAG--TA-CGCTAATTGA-TT..............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TATACGAG--TA-CGCTAATGTG-................................................................................................................................................................................2050.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000000
..................AAACTCTTTGGCAGCC---GGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droEre2
CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCAGCCCC--T-------------------------------------------------GAACA----------------------CAATCAGC--TTCCC--CACAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGA-TTTA-----------AGATTTTTCGTTTTATTTCG-----------------------------CTTGACTTGCGT---------GCCCCTTTCCTTCAGCATTT---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTCTAAAGCGT-CTTTGAAAATGTACATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGC-GAA-CCC-TTA-ATA-----------------------------------------TTCGCATCGAATGCCTCTGC-GT--------T-CGTTCGGCGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCAGCCCC--T-------------------------------------------------GAACA----------------------CAATCAGC--TTCCC--CTCAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGT-TTTA-----------AGATATTTCGTTTTGTTTCG-----------------------------CTTGACTGGCGT---------GCCCCCTTTATTGAGCATTC---------------TGTATACGAG--TA-CGCTAATTGA-TTAATGCA---GCTCTAAAGCGT-CTTTGAAAATGTTAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCC-TTA-ATA-----------------------------------------TTCGCATCGAATGCTTGTGC-GT--------T-CGTTCGGCGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CAT---GCAGCGCGCGGAAAACTCTTTGGCAGCC---GGAAATGAAACA--------CGATAAGGTA---ACCAGCCCCCAT-------------------------------------------------GAACA----------------------CCATCAGC--TTCCC--CTCAGCAAGTA---------------------------CCA-ATTGTGATGAG--AAAAG----TTAGG-TTTA-----------AGCTTTTTCATTTTGTTTAG-----------------------------CGTGGCTTGCGTT--------GCCCGTTTCCTTGACCATTC---------------TGTATACGAG--TG-CGCTAATTGA-TTCATGCA---GCTCTTAAGCGT-CTTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAACAGGT-CTC-TCA-ATT-----------------------------------------GTTGCCTCGAATGTTTCTGC-GT--------T-CATTCGGCGCASizeHit CountTotal NormTotal
No Reads
droBia1
CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---GCCCGCCC--------------------------------------------------TCCGAAC-------------------------ATCAGC--TTCCC--CTCAGCGAATA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGA-TTTA-----------AGCATTATCGTTTTGTGCCG-----------------------------CTT-----GCGTT--------GGCCCTTGCCTTGACCATTC---------------TGTATACGAG--TA-CGCTAATTGA-TTCATGCA---GCTGCTAAGCGT-CGTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-GCC-TCA-ATT-----------------------------------------GTCGCGTAGCATGTTTTTGC-GCCTG--------TTTCGGCGCASizeHit CountTotal NormTotal
No Reads
droTak1
CCA---ACAGCGCGCGGCAAACTCTTCGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCCGTCT-------------------------------------------------------AC-----------------------CCATTATC--TTCCCAACCCAGCGAATA--------------------------CCCA-ATTGTGATGAG--CCAAG----TTAGA-TTTA-----------AGCACTTTCGTTTTGTTGCC-----------------------------CTT------------------TTCCTTTTCCTTGACCATTC---------------TGTATACGAG--TA-CGCTAATTGA-TTCATGCA---GCTCTTAAGCGT-CTTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCCGTCA-ATT-----------------------------------------GTCGCGTCGAATGTT----------------------TGGCGCASizeHit CountTotal NormTotal
No Reads
droEle1
CCA---ACAGCGCGCGG------------CAGTC---GGAAATGATGCC--------CGATAAAGTATAAACAAGAAC--------------------------------------------------CCCAAAC-------------------------ATCAGC--TTCCC--CTCAGCGAGTA---------------------------CCG-ATTGTGATGAG--CAAAG----TAAGA-TTTA-----------AGCATTTTCGTTTTGTTTCG-----------------------------CTCGGCTTGCGTT--------AGTCGTTTCCTTGACCATTTTGC---ATTAATGCCTGTATACGAG--TA-CGCTAATTGA-TTCATACG---GCTCTTAAGCGT-CTTTGTAAATGTAAACTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCC-TCA-ATT-----------------------------------------GTCGCGTCGAATGTTTGTGC-GC------GAC-GGTTCGGCGCASizeHit CountTotal NormTotal
No Reads
droRho1
CCT---GCAGCGCGCGGCAAGCTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAGGTA---ACCAGCAC--------------------------------------------------CCCAAACA----------------------CCGTCAGC--TTCCC--CTAAGCGAGTA---------------------------CCA-ATTGTGATGAG--CAAAG----TTAGG-TTTA-----------TGATTTTTCGTTTTGTTTCG-----------------------------CTCGGCTTGCGTT--------ACTCGTTTCCTTGACCATTTTGC---ATTAATGTCTGTATACGAG--TA-CGCTAATTGA-TTCATGCA---GCTCTTAAGTGT-CTTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCC-TCA-ATT-----------------------------------------GTCGCGTCGAATGTTTGTAC--------------GTTCGGCGCASizeHit CountTotal NormTotal
No Reads
droFic1
CCT---GCAGCGCGCGGCAAACTCTTTGGCAGCC---GGAAATGAAACC--------CGATAAC----------------------------------------------------------------------CA----------------------CCTTCAGC--TTCCC--CTCAGCGACTA---------------------------CCG-ATTGTGATGAG--CAAAG----TTAGG-TTTA-----------AGCTTTTTCGTTTTGTTTCG-----------------------------ATTGGCTTCCGT---------TGCCGTTTCCTTGACCATTTTGC---ATTAATGCCAGTATACGAG--TG-CGCTAATTGA-TTCATGCA---CCTCTTAAGCGT-CTTTCTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAAGCAGGT-CCC-TCA-ATT-----------------------------------------GTCGCTTCGAATGTTTCTGA-GC--------C-CGTTCGGCGCASizeHit CountTotal NormTotal
No Reads
droKik1
CCTCTTTCAGCTCGTGGCAAACTCTTTGGCAGCC---GGAAATGAAAGGCTAGGACACGACACGGCT---AGGAG---------------------------------------------------------ACCA----------------------GAGCCAGC--TTCCC-----------------------------------------CG-AATGTGATGAGAGCGTGG----ATAGGTGTTA-----------AGTATTTTGGTTTTGTTCCC-----------ATTTTTTCAGTTTCATTGCTTGT---------------------TTTCCTTGACCGCTCGCT---AGA--------AAGGCGTG--CA-CGCTAATTGA-TTCATGCA---GCTGCCAAGCGT-CTTTGTAAATGTAAATTTAAGGCTAATTAAAAATTAATTGTAATTTAAACCGGGT-CCC-TCA-ATT-----------------------------------------GCCGCCTAGAATGTCTGCTTTGTCTGT-TGCT-TGTTCGGCGCASizeHit CountTotal NormTotal
No Reads
droAna3
CCT---GCAGCGCGCGGCAAACTTTTTGGCAGCC---GGAAATGAAACC--------CGATACGGTT---ACTGGCT----------------ACCGGCTTC----------------------------------TGCCCACAACCCACCGTTCATT-CAAAAGT--TC-CC-----CGAGAGTA---------------------------CCT-ATTGTGATGAG--AAAAG----TTCGA-TTTA-----------AGATTCTTCGTTGTGTTTCG-----------------------------TTT------------------------CTTCCTGGCCGTTCTGC---ATTCCTGTGTGTATACGAG--TA-CACTAATTGA-TTCATGCA---GTCTTTAAGCTGCTTTTGTAAATGTAAATTTAAGGCTAATTAAAATTTAATTGTAATTTAAAACGGGC-CCTCTCA-ATT-----------------------------------------G-CGCTTCGAACGTCAAA-----CTG------GTGTACGTCGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................TTT------------------------CTTCCTGGCCGTTCTGC---ATTCCTGTG..........................................................................................................................................................................................................2911.001100000
droBip1
CCT---GCAGCGCGCGGAAAACTTTTTGGCAGCC---GGAAATGAAACC--------CGACACGGTT---ACTGGTTCC--TGGCTACTGGCTACCGGCTCC----------------------------------CGCCCACAACCCACCGCCCATT-CAAAAGT--TCCCC-----CGGGAGTA---------------------------CCT-ATTGTGATGAG--TAAAGATTCTTCGA-TTTA-----------AGATTCTTCGTTTTGTTTCG-----------------------------TTT------------------------CTCTCTGACCGTTCTGC---ATTCCTGTGTGTATACGAG--TA-CACTAATTGA-TTCATGCA---GTCCTTAAGCTGCTACTGTAAATGTAAAT-TAAGGCTAATTAAAAATTAATTGTAATTTAAAACGGGC-CCC-TCA-ATTGCGATGCGACCG-----------------------------TTCG-ATCGAACGTAA-------CTG------GTGTACGGCGCASizeHit CountTotal NormTotal
No Reads
dp5
CCT---GCAGCGCGCGGCAAACTTTTTGGCAGCC---GGAAATGAAACT--------CGATATGGCT---ACTTC----CA-------------CCGA----ATCAGCACTCCACAGGCGTACAGCCCACCAGGC-------------------------ACCAGCCTTCCCC--CTCAACGAGTA---------------------------TCA-ATTGTGATGAGAGCAAA-T---------GTTAG-------------------GTTTCGTTTCGCTCCCCAAACT------------------------------------------------GTTGACCATTCTGC---AGTACTGCGTGTATACGAG--CAAAGATAATTGAATTTGTGCA---GCTCTGAAGCTA-CTTTGTTCATTTAAATTTAAGGCTAATTAAAAGTTAATTGTAAGTTAAAGCG--TTCC-G-CGGCCGGCCATTCGCCCATTCGGCCATCGACAGTCGT-------------------AATGTTTACGC-GGCCG------GAACACAGCGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------AATGTTTACGC-GGCCG------GAAC........2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTA-CTTTGTTCATTTAAATTTAAG...................................................................................................................................2411.0010010000000
droPer2
CCT---GTAGCGCGCGGCAAACTTTTTGGCAGCC---GGAAATGAAACT--------CGATATGGCT---ACTTC----CA-------------CCGA----ATCAGCACTCCACAGGCGCACAGCCCACCAAGC-------------------------ATCGGCCTTCCCC--CTCAACGAGTA---------------------------TCA-ATTGTGATGAGAGCAAA-T---------GTTAG-------------------GTTTCGTTTCGCTCCCCAAACT------------------------------------------------GTTGACCATTCTGC---AGTACTGCGTGTATACGAG--CA-AGATAATTGAATTTGTGCA---GCTCTGAAGCTA-CTTTGTTCATTTAAATTTAAGGCTAATTAAAAGTTAATTGTAATTTAAAGCG--TTCC-G-CGGCCGGCCATTCGCCCATTCGGCCATCGAAAGTCGT-------------------AATGTTTACGC-GGCCG------GAACACAGCGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TAC---ACAGCGCGAGGCAAACTTTTTGGCAGCC---GGAAATGAAACC--------CGATATGGTC---ACTTC----CA-------------------------------------------------------------T-----------------AAAAGT--TA-CT--CCCACCGAGCAAATCATTTCATCTTCCCCATCTCTTTCCCG-ATTGTGATGAG--CAAAAT---------GTTAA----GTTTTAAGT---TTCGTTTTCCTTTC-----------------------------CTTAGTTTATGTTTTCGTTTCGTTCGCTTCCTTGACAATTT------------CTTTGTATACGAGTTTA-TGTTAATCGATTTCATGCAGCAGCTTTTAAGCTA-CTATGTAAATTTAAATTTAAGTCTAATTAAAAATTAATTGTAATTTAAAGGTGGC-CCA--CGGCC-----------TCTTCA--AATAGCCAATTGCATTGTTTATATTCGCATCG--------------------------CCTCGCGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGGTGGC-CCA--CGGC.......................................................................................1811.00100010
droVir3
CTT---TTAGCAAGAGGCAATCTTTTTGGTAGGC---GGCCTTAGA--------------CAATGCC---ACGAC--------------------------------------------------------------GCCCACAATAAATTGTT----CCAACGGC--TTCCC--ATCTACCTGTA---------------------------CCG-AATGTGATGCG--CAAAAA---------GTTGGGTGTGCTCCAAGT---TTCGCTC----------GCCTCTTTGTT------------------------------------CCTCG---------T--TATTGC---ATTGAACATTGTA--------TA-CGTTAATTGA-ATCCATCT---ACTCTTAAGATA-CTTGTTTAATTAGAATTTAAGCTCAATTAAAATTTAATTGTAATTTAAG-CCGGC-TGC-TCA-AT--------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........GCAAGAGGCAATCTTTTTGGTAGGC---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CTACCTGTA---------------------------CCG-AATGTGAT......................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTAATTGTAATTTAAG-CCGGC-................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TAATTGA-ATCCATCT---ACTCTTAAGATA-CT......................................................................................................................................................2911.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................AAAAA---------GTTGGGTGTGCTCCAAGT---.............................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
droMoj3
TTT---TTAGCAAGGAGCAATCTTTTTGGCAGAC---GGCAGTAAAGCCTT------AGACAATGTG---CTTA--------------------------------------------------------------CGCCCACAAAAAACTGTT----CCAACGGC--TTCCC--ATTTTCGAATA---------------------------CCA-AATGTGATGCG--CAAAA----CT-------------------------TTCGCCC----------GCCTTCCTATTTCTCAGATATT----------------------------------GTTG-----------TCA-------TTGAACATGTA--TA-CGTTAACTTAATCCATATA---GTCTTAAGATAA-ATATGTAATT-AGAATTGCAGCTCAATTAAAAGATAATTTTAATTCAAAG------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTT---ATAGCGCGAGGCAATCTTTTTGGCGGCAGGCGGAAATGAAACT---------GCG------------A--------------------------------------------------------------CGCCCACAATAAAATGTT----CCAACGGC--TTCCC--TTCAACCAGCA---------------------------ACAGATTGTGATGCG--CAAAAA---------GTTGG-CACTCTTCAAGT---TTCGTTG----------GCCTTTTTGCT---------------------------------------------TTTCACCATTG--CTTCA-------CAGACTGCGCA--TA-CCTTAATTAAATGCAT--A---CTTCTAAAGCTA-TTTTGTAAATTTAAGTGTAAGCTTGATTAAACCTTAATTGTAATTTAAA-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:09 AM