ID:

dsi_6567

Coordinate:

3l:7569066-7569215 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7569216_7569353_-]; exon [3l_7569216_7569353_-]; intron [3l_7567961_7569215_-]

Repeatable elements

Name	Class	Family	Strand
(TAAAAA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCGTACGAGTCCTGAAACGATTGATGGAACGTATTCGAGGGAAACGTAAAGTAATTTTATCCACTAATTTTTTTTTTAATTTTTTATTTTTATTTTTTTTTTAATTTTTTAATCGAGTCTGATACCCTCCCAGCTGGTGATGGTCTGCTTTTCAATAGAGCCCAAACGAATTCGGCTTTGTCCACATACGTAGATACTATATGCAAAGATTTACTCAGTAGCATGCCTGGGTGGGTACTTTTAACTTGAC ************************************************.............................................................((((....)))).((.((((....)).)).))(((((......((((((((...........))))))))........)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	M024 male body	SRR553487 NRT_0-2 hours eggs	M053 female body
....................................................................................TAGTTTGATTTTTTTTTTAATTTTTT............................................................................................................................................	26	2	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................GTAGCAGGCCTTGGTAGGT..............	19	3	5	0.20	1	0	1	0	0	0
...............................................................................................................................................................................................................GATTTACTCATTCGCGTGCC.......................	20	3	5	0.20	1	0	0	1	0	0
...................................................................................................................................................................................................................................TGGGTGGGTATTTTTACTTTGA.	22	3	5	0.20	1	0	1	0	0	0
..............................GTAGTCGAGGGAAAC.............................................................................................................................................................................................................	15	1	9	0.11	1	0	0	0	1	0
.........................................................................................................................................................................................................................GTAGACGGCCTGGGTGGGT..............	19	3	12	0.08	1	0	0	0	0	1
..............................GTAGTCGAGGGAAACGG...........................................................................................................................................................................................................	17	2	19	0.05	1	1	0	0	0	0

Anti-sense strand reads

CGCATGCTCAGGACTTTGCTAACTACCTTGCATAAGCTCCCTTTGCATTTCATTAAAATAGGTGATTAAAAAAAAAATTAAAAAATAAAAATAAAAAAAAAATTAAAAAATTAGCTCAGACTATGGGAGGGTCGACCACTACCAGACGAAAAGTTATCTCGGGTTTGCTTAAGCCGAAACAGGTGTATGCATCTATGATATACGTTTCTAAATGAGTCATCGTACGGACCCACCCATGAAAATTGAACTG ************************************************.............................................................((((....)))).((.((((....)).)).))(((((......((((((((...........))))))))........)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M023 head	M024 male body	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries
..CCTGCTCAGGCCTTTGCT......................................................................................................................................................................................................................................	18	2	6	1.00	6	0	1	1	2	2	0	0
....................................................................AAACAAAAAATAAAAAATAAAAATAAACAAAAAATT..................................................................................................................................................	36	3	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................ATCGCAGGGACCCACCC...............	17	2	3	0.33	1	0	1	0	0	0	0	0
..........................................................................................................AAAAATAGCTCAGACTTT..............................................................................................................................	18	2	12	0.25	3	0	1	1	0	0	1	0
....................................................................................................................................................................................................AGTATAGGTTTCTAAATGAGT.................................	21	3	8	0.13	1	1	0	0	0	0	0	0
.........................................................................AAAGTTAAAAAATAAATTTAAAAAAAAA.....................................................................................................................................................	28	3	9	0.11	1	0	0	0	0	0	0	1
...................................................................AAAAAAAAAATTGAGAAATTAAAAT..............................................................................................................................................................	25	3	10	0.10	1	0	0	0	0	0	1	0
CACCTGCTCAGGCCTTTGCT......................................................................................................................................................................................................................................	20	3	11	0.09	1	0	0	1	0	0	0	0
.....................................................................................................................................................AAAGTTATCTCGAGT......................................................................................	15	1	14	0.07	1	0	0	0	0	0	1	0
..................................................................TAAAAAAAAAATAAAAAAATACAAAAAAAAAAAAAA....................................................................................................................................................	36	3	18	0.06	1	1	0	0	0	0	0	0
........................................................................................................AAAAAATTAGCTGAGAGTGT..............................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................AAAATAGCTCAGACTTT..............................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0

Generated: 04/24/2015 at 10:23 AM