dsi_6540

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+
Helitron-2N1_DVir	RC	Helitron	-

GCAACGCAGTGGAACAGACTTTTTAAGCCATGAATATAGATTCTTAGTCAGAATCAACCGCCGAGTCGATATTTCCCGTCCTTCTGTCTGTCCGCCCGTTCGTTTTATACTATTTGCAAAAAACTGACAAAGATATGGACTAGAACGGCAGTTTGTTGAATAAATAATTCAATAATTTAAAAAATTTAATATACTTACAGATCAGTCTTATCATGTGAGTCCGACACCCACGTTGCCAGCAATATCCGGG ************************************************......((.((((.........(((..((((...(((((........(((.(((((.............))))).)))..))))).))))..))))))).))(((((((((.....))))))))).........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.......................................................................................................................................TGGACTAGAACGGCAGTTTGTTGAATA........................................................................................	27	0	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................ATCATGTGAGTCCGACACC......................	19	0	1	1.00	1	1	0	0	0	0
................................................CAGAATGAACCGGCGAGT........................................................................................................................................................................................	18	2	2	0.50	1	1	0	0	0	0
.................................................AGAATGAACCGGCGAGTC.......................................................................................................................................................................................	18	2	3	0.33	1	0	0	1	0	0
...............................................................................................................................................................................................................TTATCACGTCAGTCTGACA........................	19	3	11	0.18	2	0	0	0	2	0
..................................................TAATCAACCGTCGAATCGAT....................................................................................................................................................................................	20	3	6	0.17	1	0	0	1	0	0
.................................................AGAATGAACCGGCGAGT........................................................................................................................................................................................	17	2	13	0.08	1	0	0	0	1	0
...............................................GTAGAATGAACCGCCGAGT........................................................................................................................................................................................	19	3	18	0.06	1	1	0	0	0	0
......................................................................................................................................ATGGGCTAGAAGGGCAG...................................................................................................	17	2	20	0.05	1	0	0	0	0	1
............................................................................................................................................TAGAACGGCGGACTGTTGA...........................................................................................	19	3	20	0.05	1	0	0	0	0	1

CGTTGCGTCACCTTGTCTGAAAAATTCGGTACTTATATCTAAGAATCAGTCTTAGTTGGCGGCTCAGCTATAAAGGGCAGGAAGACAGACAGGCGGGCAAGCAAAATATGATAAACGTTTTTTGACTGTTTCTATACCTGATCTTGCCGTCAAACAACTTATTTATTAAGTTATTAAATTTTTTAAATTATATGAATGTCTAGTCAGAATAGTACACTCAGGCTGTGGGTGCAACGGTCGTTATAGGCCC ************************************************......((.((((.........(((..((((...(((((........(((.(((((.............))))).)))..))))).))))..))))))).))(((((((((.....))))))))).........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M023 head	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	SRR902009 testis
..............GTCTAAAAAATTCGGTACTTA.......................................................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................AAAGGGCAGGAAGACAGACAG..............................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................AAAGGGCAGGAAGACAGGCAAGCGT..........................................................................................................................................................	25	3	2	0.50	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................CTGAGTGCAACGGTCATTAT......	20	3	2	0.50	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................ACTGATTTATTAAGTTA.............................................................................	17	1	5	0.40	2	0	0	0	0	0	1	1	0	0	0
.............................................................................................................................GTGGTTCTAGACCTGATC...........................................................................................................	18	3	20	0.25	5	0	0	0	0	0	0	0	5	0	0
...........................................................................GGCAGGACGACAGACA...............................................................................................................................................................	16	1	4	0.25	1	0	0	1	0	0	0	0	0	0	0
..........................................................................TGGCAGGAAGACAGA.................................................................................................................................................................	15	1	5	0.20	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................GCGTTTTTTGACTGTTTATAAA..................................................................................................................	22	3	7	0.14	1	0	0	1	0	0	0	0	0	0	0
...........................................................................GGCAGGACGACAGACAT..............................................................................................................................................................	17	2	18	0.11	2	0	0	2	0	0	0	0	0	0	0
..................................................TTTAGTCGGCGGCTCAGGT.....................................................................................................................................................................................	19	3	20	0.10	2	0	0	0	0	0	0	0	0	0	2
...........................................................................GGCAGGACGACAGAC................................................................................................................................................................	15	1	13	0.08	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................TGACTGTCTCTGTACCTG..............................................................................................................	18	2	15	0.07	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................CTGGTTCTAGACGTGATCT..........................................................................................................	19	3	17	0.06	1	1	0	0	0	0	0	0	0	0	0
..............................................................................AGGAAGACAGACAAG.............................................................................................................................................................	15	1	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................CTCAGCTATAGAGAGC............................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	4:143593-143842 -	dsi_6540	GCAACGCAGTGGAACAGACTTT-TTAAGCCAT-----GAA----TATAGATTCTTAGTCAGAATCAACCGCCGAGTCGATATTTCC-CGTCCTTCTGTCTGTCCGCCC----GTTCGT----T----T---------------------------TATACTATTTGCAAAAAACTG-----------------------------------ACAAA------------------------------------------------------------------------------------------------------GATATGGACT---------------------------------------------------------AGAACGG--CAGTTTGTTGAATAAATAATTCAATAATTTAAAAA----ATTTAATATACTTACAGATCAGTC------TTATCATGTGAGTCCGACACCCAC--------GTTGCC--AGCAATATCCGGG-------------------
droSec2	scaffold_52:137809-138058 -		GCAACGCAGTGGAACAGACTTT-TTAAGCCAT-----GAA----TATAGATTCTTAGTCAGAATCAACCGCCGAGTCGATATTTTC-AGTCCTTCTGTCTGTCCGCCC----GTTCGT----T----T---------------------------TATACTATTTGCAAAAAACTG-----------------------------------ACAAA------------------------------------------------------------------------------------------------------GATATGGACT---------------------------------------------------------AGAACGG--CAGTTTGTTGAATAAATAATTCAATAATATAAAAA----ATTTAATATACTTACAGATCAGTC------TTATCATGTGAGTCCGACACCCAC--------GTTGCC--AGCAATATCCGGG-------------------
dm3	chr4:194741-194996 -		GCAAGGCAGTGGAACAGACTTTTTTAAACC--AT---AAA----TATACATTCTTAATCAGTATCAACCTCCGAGTCAAAATTTCA-AGATCTTTTGTCCGTCCGCCC----GTTCGT----T----T----------------------------ATACTCTTTCCAAAAAACTGG-------------------C-ATA-------------AG------------------------------------------------------------------------------------------------------GATATGGACG---------------------------------------------------------AGAACGG--CAGTTTGTTGAATAAATAATTCAATAATTAAAAAAATATATTTATTATACTTACAGATCAGTC------TTATCATGTGAGTCCGACACCAAC--------TTTGCC--GGCAATATCCGGG-------------------
droEre2	scaffold_4512:1132155-1132468 +		A-------------------------------------------TATACGTTCTTATACACTAT---GAACCGAGTCGATATGGAT-AATTCGTCTGT-TGTCCGTCC----GTTCGT----T----C---------------------------T-TACTCTTTCCAAAAAACTGTTTAACCATGCATTGACTGCCAATA-------------TGAATTGACGAGAATAGTGAAGTCTATATATATAAATGTTTCTGTACCCAGAAAATA-CGTGACAATTCTGTAATTTTAATATAGTTTCCTAGATACTAACATACATA-----------------AAAA------------------------------------------------------------CAATAAATA-TTTA------AAAAAAAGGTATTTAATATACTTACAGATCAGTC------TTATTATGTGAGTCCGACACCCAG--------TTTGCC--AGCAAGAGTCGGG-------------------
droYak3	4:169710-169919 -		GCAACGCTGTGAAACATACTTT-TGAAACAAT-----AAA----TG----TTTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAA--AAATAGCGTGCCAATTCTGTAATTTTAATATAGCTTCCTAGATCCTAACATACATAAGCCCAAGCATTAAGAAAAAA--------------------------------------------------------------------A----AATAAATTAAAACATTTATTTAATATACTTACAGATCAGTC------TTATCATGTGAGTCCGACACCAAG--------TTTGCC--AGCAATAACCGGG-------------------
droEug1	scf7180000406964:109321-109438 +		AAAAAAAAT------------------------------A-------------------------AATATATAAATTGAAGAAAATATGTCGGTTGACTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA----ATTTTATTTTTTTTCAGATCAGTC------TTATTTATTAAGCCCGACGCCAAC--------TTTTCC--AGCTATAGCAGGG-------------------
droBia1	scf7180000302087:345995-346126 -		GCAACGCTGTGAAGGAGACGTT-TCCGACCCTA-----TA----TATATATTCTTGATCAGCGTCACAAGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCT----ATAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATCGGGG-AAAAAATTAAAAAAAAAT
droTak1	scf7180000413417:9581-9707 +		GCAACGCAGTGAAGGAGACGTT-TCTGACCCT-----TTA----TATATATTCTTGATCAGCGTCACTAGACGAGTCGATCTAGCCATATCCGTCTGTCCATGCGCCT----CTCAGT----T----T---------------------------TAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT---ATCGGGCTAAAA-----------CT
droEle1	scf7180000491280:3453400-3453535 -		CTC------------------T-TTCAGC------TAGCT----TATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGTCCGTCCATCTGTCCGTTT----GTCCGTTTGTA----T-----------------CGGAAACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAACT-------------------------------------------AAAGATTTGGATT-TGACATG--CAAATT-------------------------------------------------------------------------------------------------------------------------------------AT
droRho1	scf7180000772826:496-651 +		GCAACGCAGTGAAGGAGACATC-TCCGACACTATAAAGTA----TATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGTC-CGTCTGTCCGTCTGTCTGTCC----GTCTGT----CTGTTTCTACGCGAACTA---GTCTCTCAGTTTTA---------------------------------------------------------AA------------------------------------------------------------------------------------------------------GATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATTGAA-------------------
droFic1	scf7180000453103:43395-43504 +		GCAACGCAGTGAAGGAGACACC-TCAGACCCCGGAAAGTG----CATATATTCTTGATCAGCATCACTATCTGAATAGAAATACTC-TGTCCGTCTGTCTGTCTGTCC----ATCTGT----C----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000299557:8045-8336 +		GCAACGCAGTGAAGGAGACCTT-TCCGACCCTATAAAGTATATACATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTTTCTAC----GCA------------------------------------------------AACTATATAGCTCC-------------------C-ATACAAATGATCGACAAA------------------------------------------------------------------------------------------------------TTTTTAGAAA------------AAAAATTATAAGTTGGCTGTTTATCAA-----------------------------CATTTTTGCACAATTTTTTAGATA---TGG-CC----ATTTTATATTATTTCAGAATTTCGTTAAAAATTTCATGAAAATCGGACGACTATATGATATAGCTGCCATAGGAACGATCGGG-------------------
droAna3	scaffold_12935:63113-63305 -		GCAACGCAGTGAAGAAGACATC-TCCGACCCTATAAAGTA----TATATATTCTTGATCAGGATCACCTCCCGAGTCGATATAAGCATGTCCGTCTACCCGTCTGTCT----GCCATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGGTGTTTTTTAAGTTAGAAGGATGGGAGTTTCAATGGATTCCTCTTTTGGCAAAATAATTCGATA---TGCCAA----ATTTCATA----------------------------------------------------------------------------------------------
droBip1	scf7180000395197:44526-44741 -		GCAACGCTGTGAAGGAGACATC-TCCGACCCCATAAATTA----TATATATTTTTGATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTTTCTCC----ATATGATCGTGTG----------AACAAAAGGTTT--------TTGA---TTTT-TAACATCCT-----------------------------------ATAAA-----------------------------------------------------T-----------------ATTTTGATAAAA-TCCCTATAAATTAATTTAC------------------------------------------------------------------------------------------TTAATTTAATA----TAATAATTTAATTAATATACTTA----------------------------------------------------------------------------------------
dp5	Unknown_singleton_3549:1604-1763 +		---------------------T-TCCGAACCCATAAAGTA----TATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCCGTCT----GTCCGT----ATCTATTAGAGCCTAGTG---CTCAAAGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------GGAGCAA--CGATGTGTTGGATACAGACTTCTGTG-----------------------------------------------------------------------------------------------------------------AT
droPer2	scaffold_406:9111-9271 +		GAAAC--------------------CGACTCCATAAAGTA----TATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGA-CCCTGTCTGTCTGTCCGTCCGTCC----GTCCGT----CCTCTTCAGCGCTTAGTG---CTCAAAGACTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------AGAGCAA--CGATGCTTTGGATCCAGACTTCTGTA-----------------------------------------------------------------------------------------------------------------AT
droWil2	scf2_1100000004585:91683-91805 -		GCA-------GAAGGAAGTTTT-TCGGAACCCATAAAGTA----TATATATTCTTGATCAGCATCAACAGCCGAGACGATCTAGCCATGTCCGTCCGTCTGTCAGTCCGCTCGTCCGT----C----C---------------------------TACCGCCTCCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droVir3	scaffold_12961:117803-117963 +		GTAACAGGAAGAAGGAAGCTTC-TCCGGCCCCATAATATA----TATATATTCTTGCTCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCC----GTCCGTCCGTATGTATTTACGCAAGGAG---CTTAGTAACTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGCT---------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------AGACTTGAA-------------------
droGri2	scaffold_15081:1074609-1074682 -		A--------------------------------------A----TATATATTCTTGATCAGGGTCAACAGCCGAGTCGATATACCAATGTCCGTCTGTCTGTCCGTCC----GTCCGT----C----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCAACGCAGTGGAACAGACTTT-TTAAGCCAT-----GAA----TATAGATTCTTAGTCAGAATCAACCGCCGAGTCGATATTTCC-CGTCCTTCTGTCTGTCCGCCC----GTTCGT----T----T---------------------------TATACTATTTGCAAAAAACTG-----------------------------------ACAAA------------------------------------------------------------------------------------------------------GATATGGACT---------------------------------------------------------AGAACGG--CAGTTTGTTGAATAAATAATTCAATAATTTAAAAA----ATTTAATATACTTACAGATCAGTC------TTATCATGTGAGTCCGACACCCAC--------GTTGCC--AGCAATATCCGGG-------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................TGGACT---------------------------------------------------------AGAACGG--CAGTTTGTTGAATA...............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGTGAGTCCGACACC...................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCAACGCAGTGGAACAGACTTT-TTAAGCCAT-----GAA----TATAGATTCTTAGTCAGAATCAACCGCCGAGTCGATATTTTC-AGTCCTTCTGTCTGTCCGCCC----GTTCGT----T----T---------------------------TATACTATTTGCAAAAAACTG-----------------------------------ACAAA------------------------------------------------------------------------------------------------------GATATGGACT---------------------------------------------------------AGAACGG--CAGTTTGTTGAATAAATAATTCAATAATATAAAAA----ATTTAATATACTTACAGATCAGTC------TTATCATGTGAGTCCGACACCCAC--------GTTGCC--AGCAATATCCGGG-------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GCAAGGCAGTGGAACAGACTTTTTTAAACC--AT---AAA----TATACATTCTTAATCAGTATCAACCTCCGAGTCAAAATTTCA-AGATCTTTTGTCCGTCCGCCC----GTTCGT----T----T----------------------------ATACTCTTTCCAAAAAACTGG-------------------C-ATA-------------AG------------------------------------------------------------------------------------------------------GATATGGACG---------------------------------------------------------AGAACGG--CAGTTTGTTGAATAAATAATTCAATAATTAAAAAAATATATTTATTATACTTACAGATCAGTC------TTATCATGTGAGTCCGACACCAAC--------TTTGCC--GGCAATATCCGGG-------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCCGACACCAAC--------........................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGTC------TTATCATGTGAGTCCGACACC...................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GATATGGACG---------------------------------------------------------AGAACGG--CAGTTTGTTGA..................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATGGACG---------------------------------------------------------AGAACGG--CAGTTTG......................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................ATATGGACG---------------------------------------------------------AGAACGG--CAGTT........................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................AACC--AT---AAA----TATACATTCTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GACG---------------------------------------------------------AGAACGG--CAGTTTGTT....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TACTCTTTCCAAAAAACT........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TA-------------AG------------------------------------------------------------------------------------------------------GATATGGACG---------------------------------------------------------AGAACGG--.............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..AAGGCAGTGGAACAGACTTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droEre2

A-------------------------------------------TATACGTTCTTATACACTAT---GAACCGAGTCGATATGGAT-AATTCGTCTGT-TGTCCGTCC----GTTCGT----T----C---------------------------T-TACTCTTTCCAAAAAACTGTTTAACCATGCATTGACTGCCAATA-------------TGAATTGACGAGAATAGTGAAGTCTATATATATAAATGTTTCTGTACCCAGAAAATA-CGTGACAATTCTGTAATTTTAATATAGTTTCCTAGATACTAACATACATA-----------------AAAA------------------------------------------------------------CAATAAATA-TTTA------AAAAAAAGGTATTTAATATACTTACAGATCAGTC------TTATTATGTGAGTCCGACACCCAG--------TTTGCC--AGCAAGAGTCGGG-------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

GCAACGCTGTGAAACATACTTT-TGAAACAAT-----AAA----TG----TTTCTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAA--AAATAGCGTGCCAATTCTGTAATTTTAATATAGCTTCCTAGATCCTAACATACATAAGCCCAAGCATTAAGAAAAAA--------------------------------------------------------------------A----AATAAATTAAAACATTTATTTAATATACTTACAGATCAGTC------TTATCATGTGAGTCCGACACCAAG--------TTTGCC--AGCAATAACCGGG-------------------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

AAAAAAAAT------------------------------A-------------------------AATATATAAATTGAAGAAAATATGTCGGTTGACTTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA----ATTTTATTTTTTTTCAGATCAGTC------TTATTTATTAAGCCCGACGCCAAC--------TTTTCC--AGCTATAGCAGGG-------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAACGCTGTGAAGGAGACGTT-TCCGACCCTA-----TA----TATATATTCTTGATCAGCGTCACAAGACGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCT----ATAGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTATCGGGG-AAAAAATTAAAAAAAAAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCAACGCAGTGAAGGAGACGTT-TCTGACCCT-----TTA----TATATATTCTTGATCAGCGTCACTAGACGAGTCGATCTAGCCATATCCGTCTGTCCATGCGCCT----CTCAGT----T----T---------------------------TAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT---ATCGGGCTAAAA-----------CT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTC------------------T-TTCAGC------TAGCT----TATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGTCCGTCCATCTGTCCGTTT----GTCCGTTTGTA----T-----------------CGGAAACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAACT-------------------------------------------AAAGATTTGGATT-TGACATG--CAAATT-------------------------------------------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCAACGCAGTGAAGGAGACATC-TCCGACACTATAAAGTA----TATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAGTC-CGTCTGTCCGTCTGTCTGTCC----GTCTGT----CTGTTTCTACGCGAACTA---GTCTCTCAGTTTTA---------------------------------------------------------AA------------------------------------------------------------------------------------------------------GATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATTGAA-------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAACGCAGTGAAGGAGACACC-TCAGACCCCGGAAAGTG----CATATATTCTTGATCAGCATCACTATCTGAATAGAAATACTC-TGTCCGTCTGTCTGTCTGTCC----ATCTGT----C----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAACGCAGTGAAGGAGACCTT-TCCGACCCTATAAAGTATATACATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTTTCTAC----GCA------------------------------------------------AACTATATAGCTCC-------------------C-ATACAAATGATCGACAAA------------------------------------------------------------------------------------------------------TTTTTAGAAA------------AAAAATTATAAGTTGGCTGTTTATCAA-----------------------------CATTTTTGCACAATTTTTTAGATA---TGG-CC----ATTTTATATTATTTCAGAATTTCGTTAAAAATTTCATGAAAATCGGACGACTATATGATATAGCTGCCATAGGAACGATCGGG-------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCAACGCAGTGAAGAAGACATC-TCCGACCCTATAAAGTA----TATATATTCTTGATCAGGATCACCTCCCGAGTCGATATAAGCATGTCCGTCTACCCGTCTGTCT----GCCATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGGTGTTTTTTAAGTTAGAAGGATGGGAGTTTCAATGGATTCCTCTTTTGGCAAAATAATTCGATA---TGCCAA----ATTTCATA----------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................TCCGTCTACCCGTCTGTCT----GCCATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC.......................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................CCCGTCTGTCT----GCCATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGGTG................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................TCGATATAAGCATGTCCGTCTACCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	1.00	3	2	1	0	0	0	0
...............................................................................................TACCCGTCTGTCT----GCCATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGG..................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
....................................................................................................GTCTGTCT----GCCATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGGTGTT..............................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
..........................................................................GTCGATATAAGCATGTCCGTCTACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.67	2	2	0	0	0	0	0
.................................................................................TAAGCATGTCCGTCTACCCGTCTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.67	2	1	1	0	0	0	0
..........................................................................GTCGATATAAGCATGTCCGTCTACCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.67	2	2	0	0	0	0	0
...........................................................................TCGATATAAGCATGTCCGTCTACCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
...........................................................................TCGATATAAGCATGTCCGTCTACCCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	1	0	0	0	0
..................................................TTCTTGATCAGGATCACCTCCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	14	0.21	3	3	0	0	0	0	0
...............................................ATATTCTTGATCAGGATCACCTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0
......CAGTGAAGAAGACATC-TCCGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0
................................................................CACCTCCCGAGTCGATATAAGCATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
...ACGCAGTGAAGAAGACATC-TCCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
..................................................TTCTTGATCAGGATCACCTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
................................................TATTCTTGATCAGGATCACCTCCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	14	0.07	1	1	0	0	0	0	0
..................................................TTCTTGATCAGGATCACCTCCCGAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	14	0.07	1	1	0	0	0	0	0
..................................................TTCTTGATCAGGATCACCTCCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	16	0.06	1	1	0	0	0	0	0
...........................................................AGGATCACCTCCCGAGTCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	1
.....................................................TTGATCAGGATCACCTCCCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	17	0.06	1	1	0	0	0	0	0
..AACGCAGTGAAGAAGACATC-TCCGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TCCTCTTTTGGCAAAATAATTCGATA---TG..............................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..............................................TATATTCTTGATCAGGATCACCTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTTTTTTAAGTTAGAAGGATGG...........................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.................................................ATTCTTGATCAGGATCACCTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TTTTTTAAGTTAGAAGGATGGGAGT.......................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.............................................ATATATTCTTGATCAGGATCACCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droBip1

GCAACGCTGTGAAGGAGACATC-TCCGACCCCATAAATTA----TATATATTTTTGATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTTTCTCC----ATATGATCGTGTG----------AACAAAAGGTTT--------TTGA---TTTT-TAACATCCT-----------------------------------ATAAA-----------------------------------------------------T-----------------ATTTTGATAAAA-TCCCTATAAATTAATTTAC------------------------------------------------------------------------------------------TTAATTTAATA----TAATAATTTAATTAATATACTTA----------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

---------------------T-TCCGAACCCATAAAGTA----TATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCCGTCT----GTCCGT----ATCTATTAGAGCCTAGTG---CTCAAAGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------GGAGCAA--CGATGTGTTGGATACAGACTTCTGTG-----------------------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................AAGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------GGAGCAA--C............................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	3	1	0
.....................................................TTGATCAGCATCAATAGCCGAGTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	3.10	62	0	0	0	0	7	0	0	55	0	0
...................................................................................................................................................AAGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------GGAGCAA--CGA..........................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	3	0	0
...................................................................................................................................................AAGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------GGAGCAA--CG...........................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	2	0	0
...............................................ATATTCTTGATCAGCATCAATAGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	1.55	31	0	31	0	0	0	0	0	0	0	0
................................................................................TGAGCCCTGTCTGTCTGTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	1.05	21	0	21	0	0	0	0	0	0	0	0
...................................................................................................................................................AAGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------GGAGCA................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TCAAAGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------GGAGCA................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................ATATTCTTGATCAGCATCAATAGCCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.90	18	0	18	0	0	0	0	0	0	0	0
....................................................CTTGATCAGCATCAATAGCCGAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.65	13	0	13	0	0	0	0	0	0	0	0
...............................................ATATTCTTGATCAGCATCAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.55	11	0	0	11	0	0	0	0	0	0	0
...........................................................AGCATCAATAGCCGAGTCGATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.45	9	0	9	0	0	0	0	0	0	0	0
....................................................................................CCCTGTCTGTCTGTCCGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.35	7	0	0	0	0	0	0	6	0	1	0
................................................TATTCTTGATCAGCATCAATAGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.30	6	0	6	0	0	0	0	0	0	0	0
..........................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------GGAGCAA--CGATGT.......................................................................................................................................	21	7	0.29	2	0	2	0	0	0	0	0	0	0	0
..................................................TTCTTGATCAGCATCAATAGCCGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	3	0	0
........................................................ATCAGCATCAATAGCCGAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	3	0	0	0	0
..................................AAAGTA----TATATATTCTTGATCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	3	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGGATACAGACTTCTGTG-----------------------------------------------------------------------------------------------------------------AA	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.............................................................................GATTGAGCCCTGTCTGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................GCCGAGTCGATTGAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.......................................................GATCAGCATCAATAGCCGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0
................................................................CAATAGCCGAGTCGATTGAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................TGTCTGTCTGTCCGTCCGTCT----.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................ATATTCTTGATCAGCATCAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	2	0	0	0	0	0
.......................................................................................TGTCTGTCTGTCCGTCCGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	2	0	0	0
................................................................................TGAGCCCTGTCTGTCTGTCCGTCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................CCTGTCTGTCTGTCCGTCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.....................................................................GCCGAGTCGATTGAGCCCTGTCTGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................CTGTCTGTCTGTCCGTCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................CTGTCTGTCTGTCCGTCCGTCT----G......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................TAGCCGAGTCGATTGAGCCCTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................TCTGTCTGTCCGTCCGTCT----G......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................TGAGCCCTGTCTGTCTGTCCGTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................TGTCTGTCCGTCCGTCT----G......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................GAGTCGATTGAGCCCTGTCTGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................TTCTTGATCAGCATCAATAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
....................................................................................CCCTGTCTGTCTGTCCGTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................GAGTCGATTGAGCCCTGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................TCTGTCTGTCCGTCCGTCT----GTCCGT----.............................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................CGAGTCGATTGAGCCCTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0
........................................................................GAGTCGATTGAGCCCTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................TATATTCTTGATCAGCATCAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................AGCCCTGTCTGTCTGTCCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................................................TCAATAGCCGAGTCGATTGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................TCTGTCCGTCCGTCT----GTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..................................................TTCTTGATCAGCATCAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................TGTCTGTCTGTCCGTCCGTCT----GTC....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TGTCTGTCTGTCCGTCCGTCT----GTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................TCTGTCTGTCCGTCCGTCT----.......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

GAAAC--------------------CGACTCCATAAAGTA----TATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGA-CCCTGTCTGTCTGTCCGTCCGTCC----GTCCGT----CCTCTTCAGCGCTTAGTG---CTCAAAGACTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------AGAGCAA--CGATGCTTTGGATCCAGACTTCTGTA-----------------------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................AAAGACTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------AGAGCAA--C............................................................................................................................................	24	20	5.40	108	0	108	0	0	0	0
.....................................................TTGATCAGCATCAATAGCCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0
....................................................................................CCCTGTCTGTCTGTCCGTCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGCT---------------------------------------------------------AGAGCAA--CGAT.........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................GCT---------------------------------------------------------AGAGCAA--CGATGCTTTG...................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................AAGAGCT---------------------------------------------------------AGAGCAA--CGATGCTTTGGAT................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1
................................................TATTCTTGATCAGCATCAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1

droWil2

GCA-------GAAGGAAGTTTT-TCGGAACCCATAAAGTA----TATATATTCTTGATCAGCATCAACAGCCGAGACGATCTAGCCATGTCCGTCCGTCTGTCAGTCCGCTCGTCCGT----C----C---------------------------TACCGCCTCCGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................TTCTTGATCAGCATCAACAGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
...............................................................................TCTAGCCATGTCCGTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
...................................................................CAGCCGAGACGATCTAGCCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
........................................................ATCAGCATCAACAGCCGAGACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...........................................................AGCATCAACAGCCGAGACGATCTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
...............................................................TCAACAGCCGAGACGATCTAGCCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0

droVir3

GTAACAGGAAGAAGGAAGCTTC-TCCGGCCCCATAATATA----TATATATTCTTGCTCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCC----GTCCGTCCGTATGTATTTACGCAAGGAG---CTTAGTAACTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGCT---------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------AGACTTGAA-------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................GAGTCGATCTAGCCATGTCCGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TCGATCTAGCCATGTCCGTCTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.35	7	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GCCGAGTCGATCTAGCCATGTCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCAACAGCCGAGTCGATCTAGCCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCAGCATCAACAGCCGAGTCGATCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................TCAGCATCAACAGCCGAGTCGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CGAGTCGATCTAGCCATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................CCGAGTCGATCTAGCCATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CCGTCTGTCTGTCCGTCC----GTCCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................CCGAGTCGATCTAGCCATGTCCGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CGAGTCGATCTAGCCATGTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................AGTCGATCTAGCCATGTCCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CGAGTCGATCTAGCCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AACAGCCGAGTCGATCTAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................AACAGCCGAGTCGATCTAGCCATGTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GTCTGTCTGTCCGTCC----GTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................................................TCAACAGCCGAGTCGATCTAGCCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCAACAGCCGAGTCGATCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TCAACAGCCGAGTCGATCTAGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GAGTCGATCTAGCCATGTCCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TGTCTGTCCGTCC----GTCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CATGTCCGTCTGTCTGTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................CAACAGCCGAGTCGATCTAGCCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................CATCAACAGCCGAGTCGATCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ATCAACAGCCGAGTCGATCTAGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GAGTCGATCTAGCCATGTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CGAGTCGATCTAGCCATGTCCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................CAACAGCCGAGTCGATCTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGTCCGTCC----GTCCGTCCGTATGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................ACAGCCGAGTCGATCTAGCCATGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................CGTCTGTCTGTCCGTCC----GTCCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droGri2

A--------------------------------------A----TATATATTCTTGATCAGGGTCAACAGCCGAGTCGATATACCAATGTCCGTCTGTCTGTCCGTCC----GTCCGT----C----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................GATATACCAATGTCCGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	1	0

dsi_6540

4:143643-143792 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-21.0	-21.0	-21.0