ID:

dsi_6510

Coordinate:

3l:16214620-16214769 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(TTG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

GGATCCAGCGAACGCCAGATGCAATTTCATCGAGGACCTCAGCACGAATGGTATACACAAATTGAAAACTGCCAACTATTTCAGCCAGACCCTCTCAAGAAATTTCAAGACCCAAATTCCAACCCACCATACACACCAAATACGTACACAACAACAACAACAACAACAACAGTCCGTACAACAACAACAACAACAAACAGTACCATTGTCAGTACAACAACAACCACATCAACAGCAGAAACAACAACAG ************************************************...........(((((...........(((((....(((...)))...))))))))))................................((((.((........................)).))))......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR553488 RT_0-2 hours eggs
......................AATTTCATCGAGGACCTCAGC...............................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0
........................TTTCATCGAGGACCTCAGC...............................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0
............................................................................................................................................TACGGGCACCACAACAACAACAACAAC...................................................................................	27	3	4	0.25	1	0	0	1
............................................................................................................................................................ACAACAACAACACACGTCCGT.........................................................................	21	3	15	0.07	1	0	0	1

Anti-sense strand reads

CCTAGGTCGCTTGCGGTCTACGTTAAAGTAGCTCCTGGAGTCGTGCTTACCATATGTGTTTAACTTTTGACGGTTGATAAAGTCGGTCTGGGAGAGTTCTTTAAAGTTCTGGGTTTAAGGTTGGGTGGTATGTGTGGTTTATGCATGTGTTGTTGTTGTTGTTGTTGTTGTCAGGCATGTTGTTGTTGTTGTTGTTTGTCATGGTAACAGTCATGTTGTTGTTGGTGTAGTTGTCGTCTTTGTTGTTGTC ************************************************...........(((((...........(((((....(((...)))...))))))))))................................((((.((........................)).))))......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis
..........................................................................................GGAGAGTTCTGTAAAGT...............................................................................................................................................	17	1	2	0.50	1	0	0	1	0	0	0
..........................................................................................GGAGAGTTCATTAAAGT...............................................................................................................................................	17	1	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................................................................................GGTTGTTGTTGTTTCTCATGC..............................................	21	3	13	0.31	4	0	4	0	0	0	0
.............................................................................................................................................................................................................................TTGGTGTAGTTAACGTCTTGGT.......	22	3	4	0.25	1	0	1	0	0	0	0
...................................................................................CTGTCTAGGAGAGTTC.......................................................................................................................................................	16	2	20	0.25	5	4	0	1	0	0	0
...................................................................................................................TAAGGTTGGGTGCCATG......................................................................................................................	17	2	5	0.20	1	1	0	0	0	0	0
.....................................................................................................................................................................................GTTGTTGTTGTTGTTTGT...................................................	18	0	15	0.13	2	0	0	0	2	0	0
...................ACGTTATAGTCGCTCCTGCA...................................................................................................................................................................................................................	20	3	9	0.11	1	0	1	0	0	0	0
..........................................................................................................................................................GTTGATGTTGTTGTTGTCAGTCTT........................................................................	24	3	11	0.09	1	0	0	0	1	0	0
...............................................................................................................................................................................................TTCTGTGTCATGGTAAC..........................................	17	2	11	0.09	1	1	0	0	0	0	0
..................................................................................................................................AGTGTGGGATATGCATGTG.....................................................................................................	19	3	13	0.08	1	1	0	0	0	0	0
......................................................................................TCCGGGAGAGTTCTAT....................................................................................................................................................	16	2	13	0.08	1	0	0	0	1	0	0
..................................................................................................................................................................TGTATTTGTCAGGTATGTTG....................................................................	20	3	13	0.08	1	0	0	0	1	0	0
..................................................................TTTACGGTAGGTAAAGTCGGT...................................................................................................................................................................	21	3	14	0.07	1	0	0	0	0	0	1
...................................................................................................................................GTGTGGGTTATGCAGGT......................................................................................................	17	2	14	0.07	1	1	0	0	0	0	0
......................................................................................................................................................................................TTGTTGTTGTTGTTTGT...................................................	17	0	19	0.05	1	0	0	0	1	0	0
.....................................................................................................................................................................................GTTGTTGTTGTTGTTTG....................................................	17	0	20	0.05	1	0	0	0	1	0	0
........................................................................................AGGGAGAGATCTTTAAA.................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................ATGTTGGAGTTGGTGTA.....................	17	2	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................TGTTGTTGTTGTTTGT...................................................	16	0	20	0.05	1	0	0	1	0	0	0

Generated: 04/24/2015 at 03:04 AM