ID:

dsi_651

 Coordinate:

3r:4661831-4661980 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.6 -38.4 -38.4

Flybase annnotation

CDS [3r_4661829_4661830_+]; five_prime_UTR [3r_4661619_4661828_+]; exon [3r_4661619_4661830_+]; intron [3r_4661831_4662760_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTGGGACGGAGCGCGGTACTGCTGATTAACACGGGAATATCTGCAAAATGTGAGTGAATGGAGGAGTGCTACCGAAAGCAAATACACACATAGCCAGTGCATTAATTGTGGACCGCCTGATAGTGGCTAGCCGGTCGGTCCCGGGGCCATAAATCGCGTTGCTCGGACGACCCAGCCGGCGATGTTGCTTGGAAATAAACAACCGGGACTAATGGTGGATCCACCATAAGCGCTCCACGTGGTCGCGTG
**************************************************.........(((((.....)).))).((((((.........((((((((.(((.....))).))..........))))))((((((.(((((((((((........))....)))))..))))..))))))....)))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
............................................................................................................................................................GCGTTGCTCGGACGACCCAG.......................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.GTGGGACGGAGCGCG.......................................................................................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................TCGCGTTGCTCGGACAACCCAGCCG....................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................TGCTCGGACGACCCAGCCGGCG.................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................CCGGCGCTGTTACTTTGAAA...................................................... 20 3 3 0.67 2 0 0 2 0 0 0
......................................................................................................................................................TAACTTGCGTTTCTCGGACGAC.............................................................................. 22 3 2 0.50 1 0 0 0 1 0 0
......................................................................................................................................................TAACTTGCGTTTCTCGGACGA............................................................................... 21 3 3 0.33 1 0 0 0 1 0 0
..................................................................................................................................................................CTCGGACGACCCACC......................................................................... 15 1 4 0.25 1 0 0 0 0 1 0
................................................................................................................................TCGCCCGTCGGGCCCGGGG....................................................................................................... 19 3 5 0.20 1 0 0 1 0 0 0
................................................................................................................................................................................CCGGCGCTGTTACTTTGAA....................................................... 19 3 18 0.17 3 0 0 2 1 0 0
GGGGGGACGGATCGCGG......................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 1 0 0
..........................................................................................................................................................................................TGCTTGGAAATAAAAAA............................................... 17 1 11 0.09 1 0 0 1 0 0 0
.........................................................................................................................................................................................................AACGGGGACTAAGGGTCGA.............................. 19 3 11 0.09 1 0 0 0 0 0 1
................................................................................................................................................................................................GATACAAACAACCGGGA......................................... 17 2 12 0.08 1 0 0 1 0 0 0
.................................................................................................................................................................GCTCGAAGGACCAAGCCGGC..................................................................... 20 3 14 0.07 1 0 1 0 0 0 0
....................................................................................................................................................................................CGATGTTGCTGGGAA....................................................... 15 1 14 0.07 1 0 0 0 0 1 0
.....................................................................................................................................................................................GTTGTTGCTTGGAATTAA................................................... 18 2 18 0.06 1 0 1 0 0 0 0
............................................................................................................GTGGACCGCTTGCTAG.............................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................................TTGCTTGGATATAAA.................................................. 15 1 20 0.05 1 0 0 0 0 1 0
.................................................................................................................................AGCCGGTCGGTACCA.......................................................................................................... 15 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

CCACCCTGCCTCGCGCCATGACGACTAATTGTGCCCTTATAGACGTTTTACACTCACTTACCTCCTCACGATGGCTTTCGTTTATGTGTGTATCGGTCACGTAATTAACACCTGGCGGACTATCACCGATCGGCCAGCCAGGGCCCCGGTATTTAGCGCAACGAGCCTGCTGGGTCGGCCGCTACAACGAACCTTTATTTGTTGGCCCTGATTACCACCTAGGTGGTATTCGCGAGGTGCACCAGCGCAC
**************************************************.........(((((.....)).))).((((((.........((((((((.(((.....))).))..........))))))((((((.(((((((((((........))....)))))..))))..))))))....)))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.........................................................................................GTATCGGTCACGTAATTA............................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................ACCAGCTAGGTGGTAT..................... 16 1 1 1.00 1 0 1 0 0 0
..........................................................TACCTCCTCACCAGAGCTTT............................................................................................................................................................................ 20 3 6 0.17 1 0 0 1 0 0
.....................CGACTAAGTGTGCCCTA.................................................................................................................................................................................................................... 17 2 6 0.17 1 0 0 0 1 0
.....................CGTCTAAGTGTGCCCT..................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 2

Generated: 04/24/2015 at 10:21 AM