ID:

dsi_6499

Coordinate:

3r:10735046-10735195 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-10.6	-10.6	-10.3

Flybase annnotation

exon [3r_10735196_10735554_+]; five_prime_UTR [3r_10735196_10735296_+]; intron [3r_10729286_10735195_+]

Repeatable elements

Name	Class	Family	Strand
(TG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTGCCTTGCATCGGTGCATGTGTATGTGTGTGCGTGTGACATTGTATATGTGTGAGTGATTGTGTGCGAAAGGAAGAGAGCGAATGTGTGTGCAAATGCGTTTTGGCAGAGAGCACGTGACAACGCCCATTTATGACGATGACGTCTTCCTTTGAACTTTAAACCCATTGATTTTGTAACGCTTTTCTTTTCGATTGCAGGTCAAGTAACGAGAGATAACAATAGAGCAACAAGAGCAGCAGCCAGAACA *****************************************************.......(((((.......((((.(((..(((....)))..))).))))........)))))....*******************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	M053 female body	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	M024 male body	GSM343915 embryo
........................................................................................................................................................................................................................TAACAATAGAGCAACAAGAGCAGCAGC.......	27	0	1	1.00	1	0	0	0	0	1	0	0	0	0
............GGTGCATGTGTATGTGTGTG..........................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...............................................................................................ATGCGTTTTGGCAGAGAGCACGTGAC.................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TAACAATAGAGCAACAAGAGCAGC..........	24	0	1	1.00	1	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................TAACAATAGAGCAACAAGAGCAGCAGCC......	28	0	1	1.00	1	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................AACAAGAGCAGCGGCCGGAAC.	21	2	1	1.00	1	1	0	0	0	0	0	0	0	0
.......................................................GTGATTGTGTGCGAAAGGAAGAGAGCG........................................................................................................................................................................	27	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................AACCCATTGATCTTGTTAC......................................................................	19	2	4	0.25	1	0	0	0	0	0	0	0	1	0
..............................................................TGGGCGAAAGGAGGTGAGCGA.......................................................................................................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................TTTTCTTTTCGAATGCA...................................................	17	1	12	0.08	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TCAAGTGTCGAGAGATA................................	17	2	17	0.06	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AACGAGAGATAATGATACAG.......................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1
...................................................................................ATGGGTGTGCAAATGTGTTG...................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................CAAGTAAGGAGACATAAGA.............................	19	3	20	0.05	1	1	0	0	0	0	0	0	0	0

Anti-sense strand reads

GACGGAACGTAGCCACGTACACATACACACACGCACACTGTAACATATACACACTCACTAACACACGCTTTCCTTCTCTCGCTTACACACACGTTTACGCAAAACCGTCTCTCGTGCACTGTTGCGGGTAAATACTGCTACTGCAGAAGGAAACTTGAAATTTGGGTAACTAAAACATTGCGAAAAGAAAAGCTAACGTCCAGTTCATTGCTCTCTATTGTTATCTCGTTGTTCTCGTCGTCGGTCTTGT *******************************************************************************************************************************.......(((((.......((((.(((..(((....)))..))).))))........)))))....*****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	O001 Testis	O002 Head
.....................CATACACACACGCACACT...................................................................................................................................................................................................................	18	0	3	1.00	3	0	0	0	3
..................................................................................................................................................AAGGAAGCTTCAAATTTGG.....................................................................................	19	2	2	1.00	2	0	2	0	0
.........................................................................................................................................................................................................AGTTCATTTCTCACTGTTGTTAT..........................	23	3	1	1.00	1	1	0	0	0
............................ACACGCACACTGTAACAT............................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................AGTTTATTGCTCTCTAGT...............................	18	2	4	0.25	1	1	0	0	0
..........................................................................................................................................................................................................GTTCATTTCTCACTGTTGTTAT..........................	22	3	5	0.20	1	1	0	0	0
........................................................................................................................................................................................AAGAAAAGCTAAGGTTCA................................................	18	2	20	0.05	1	0	1	0	0
.......................................................................................................................................................AGCTTCAAATTTGGGTAGC................................................................................	19	3	20	0.05	1	0	1	0	0

Generated: 04/24/2015 at 10:47 AM