dsi_6471

AACATCCGCCAAGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTAAGTAATTGCCTAATTGATACTAGAATTTAGAGAAGTTTCTAGAATGTATTAATTTAATATTTTTTCCTATCAATACAGATTGAAGACCCTCCTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCA ************************************************..............(((((((((.....(((((((....)))))))..)))))))))........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	O001 Testis	SRR618934 dsim w501 ovaries	M025 embryo
.............................................................................................................................................CTCCTGTCAGACATCTACGACACC................	24	0	1	2.00	2	0	2	0	0	0	0	0	0
.............TGGTGGACGTTTGTGACGAGTTCAGC..............................................................................................................................................	26	0	1	2.00	2	0	0	0	1	0	0	1	0
.......GCCAAGTGGTGGACGTTTGTGACGAGT...................................................................................................................................................	27	0	1	1.00	1	0	0	0	0	1	0	0	0
...........................GACGAGTTCAGCAAGGAG........................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0
.........CAAGTGGTGGACGTTTGTGACG......................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
............................................................................................................................................................TACGACACCAGCGAGAGCCCCGGCA	25	0	1	1.00	1	0	0	0	1	0	0	0	0
.....................GTTTGTGACGAGTTCAGCAAGGAG........................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
................TGGACGTTTGTGACGAGTTCAGC..............................................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	0	1	0
...........................GACGAGTTCAGCAAGG..........................................................................................................................................	16	0	1	1.00	1	0	0	1	0	0	0	0	0
.......GCCAAGTGGTCGCCGTTTGT..........................................................................................................................................................	20	2	1	1.00	1	1	0	0	0	0	0	0	0
.....................GTTTGTGACGAGTTCAGCA.............................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	1	0	0
......................TTTGTGACGAGTTCAGCAAGGAGGA......................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0
.........................................................................TTGAATTTAGAGAAGTATGTAG......................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0
.............TGGTGGACGTTTGTGACGAGT...................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
........CCAGGTGGTGGACGTTTGTGA........................................................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0
...............................................................................................................................AGAAATTGAAGACCCTCCTGTCAGA.............................	25	2	1	1.00	1	1	0	0	0	0	0	0	0
.....................GTTTGTGACGAGTTCAGCAAGGAGGA......................................................................................................................................	26	0	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................ACATCTACGACACCAGCGAGAGCCCCGGCA	30	0	1	1.00	1	0	0	1	0	0	0	0	0
............................................................................................................................................CCTCCTGTCAGACATCTAC......................	19	0	1	1.00	1	0	0	0	0	0	0	0	1
.........................................................................TGGAATTTAGAGAAGTATCGAG......................................................................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0
.........................................................................TAGAATGTAGAGAAGTATGTAG......................................................................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0
.........................................................................TGGAATGTAAAGAAGTTTCTAG......................................................................................	22	3	4	0.25	1	1	0	0	0	0	0	0	0
.........................................................................TGGAATTTAGAGAAGTTTTGAG......................................................................................	22	3	5	0.20	1	1	0	0	0	0	0	0	0
.........................................................................TAGAATTTAAAGAAGTATGTAG......................................................................................	22	3	6	0.17	1	1	0	0	0	0	0	0	0
....................................GGCAAGGAGGAGAAGT.................................................................................................................................	16	1	13	0.15	2	0	0	0	0	2	0	0	0
...............GTGGGGGTTTGTGACGA.....................................................................................................................................................	17	2	9	0.11	1	0	0	0	0	1	0	0	0
...............................AGTTCAACAAGGAGGA......................................................................................................................................	16	1	14	0.07	1	0	0	1	0	0	0	0	0

TTGTAGGCGGTTCACCACCTGCAAACACTGCTCAAGTCGTTCCTCCTCTTCATTCATTAACGGATTAACTATGATCTTAAATCTCTTCAAAGATCTTACATAATTAAATTATAAAAAAGGATAGTTATGTCTAACTTCTGGGAGGACAGTCTGTAGATGCTGTGGTCGCTCTCGGGGCCGT ************************************************..............(((((((((.....(((((((....)))))))..)))))))))........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
..............................CTCAAGACGTTCCTCCCGTTCAT................................................................................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................................................................CTGTAGGTTCTGTGGTCGC............	19	2	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................ATGAACGGCTTAAGTATGATCTT.......................................................................................................	23	3	3	0.67	2	0	0	2	0	0	0	0	0
............................................................................................................TTATTAAAAAGGAAAGTTATGTGT.................................................	24	3	3	0.33	1	0	0	0	1	0	0	0	0
.....................................................................................................................................................GCTGTAGATGCTGTGCTC..............	18	2	5	0.20	1	0	0	0	1	0	0	0	0
..............................................................................................................................................AGGAGAGTCTGTCGATG......................	17	2	6	0.17	1	0	0	0	0	1	0	0	0
......................................................................................................................................................CTGTAGGTTCTGTGGTCG.............	18	2	7	0.14	1	0	0	0	0	0	1	0	0
..................................................................................................................................................................TGGTCTCTCTCCGGGC...	16	2	15	0.13	2	2	0	0	0	0	0	0	0
..................................................................................................................ATAAGGATAGTTATG....................................................	15	1	8	0.13	1	1	0	0	0	0	0	0	0
........................................................................................................................................................GTAGATGCTGTGCTCGA............	17	2	15	0.07	1	0	0	0	0	1	0	0	0
...............................................................AATACCTATGATCTTA......................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0
..................................................................................................................................CAAACTTCTAGGAGGA...................................	16	2	20	0.05	1	0	0	0	0	0	0	1	0
...........................CTGCTCTAGTCGTTC...........................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0	0
................................................................................................................CAAAAAGGATAGTTA......................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:1751347-1751527 -	dsi_6471	---AACATCCGCCAAGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTAAGTAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTAATTGATACTAG---AATTTAG----------------------AGAAG--------------TTT-C-----TAGAATGTA-----T-TAATTTA----A-TATTT-----------------TTTCCTATC--------A---------------------ATACAGATTG--AAGACCCTCCTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCA
droSec2	scaffold_6:1938693-1938878 -		---AACATCCGCCAAGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTAAGTAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTAATTGATACTAG---AATTTAG----------------------AGAAG--------------TTT-CTCTTATAAAATGTA-----T-TAATTTA----A-TATTT-----------------CCTCCTATC--------A---------------------ATACAGATTG--AAGACCCTCCTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCA
dm3	chr3R:1829584-1829788 -		---AACATCCGCCAGGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTAAGTGGACCTTAATT-------------------------------------------------------C---------------------------------------------------------------------------------------------TAATTGTA------------ATTGTCTAGTTGATACTAG---AATTTAG----------------------AGAAG--------------TTC-CTCTTATAAAATTTC-----T-TAATTTA----A-TATTT-----------------CCTCCTATC--------A---------------------ATACAGATTG--AAGACCCTCCTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCA
droEre2	scaffold_4770:2094328-2094613 -		---AACATCCGCCAGGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTTAGTGGTCATTT-----------------------------------------------------GTT----------ATTCGGAAA--------------------CTAGATACTTAGTGTAAATTTACCCATATAGTTATACCGCATTTTTCGATTTAATCCTAAAAGTA------------ATTGTCTAATTGACACTAG---CATTTCG----------------------AGGACTGATTTGAAAGAAATGT-TTTTAATAAAATGTA-----T-TAATTTAA---ATTATTT-----------------TCTCCTATC--------A---------------------ATTTAGATTG--AAGACCCTCCTGTCAGACATCTATGACACTAGCGAGAGCCCCGGCA
droYak3	3R:17775339-17775568 -		---AACATCCGCCAGGTGGTGGACGTTTGTGATGAGTTCAGCAAGGAGGAGAAGTGAGTAGCTATT------------------------------------------------------GTT-----------TTCGGCAA--------------------CTA------------------------------------------------------TAGTTTTA------------GTTATACAATTAACCCTAG---CATTTGG----------------------AGAAGTCAATTCCAAGGAGTTTATTTTTATACAATTTT-----TGTAATTAA----A-TATTT-----------------TCTTTTATA--------A---------------------AACCAGGTTG--AAGACCCTCCTGTCAGACATCTATGACACCAGCGAGAGTCCCGGCA
droEug1	scf7180000409766:824502-824679 -		---AACATCCGCCAAGTGGTGGATGTTTGTGATGAGTTCAACAAGGAAGAGAAGTAAGTATCTT-C-------------------TTCATAAGTTTGGTAACAATTCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATATA-----T-GAAACTA----ACCATTTCCTT---------------CTTTTTC--------A---------------------AACAAGATTG--AAGACCCTCCTCTCCGACATCTATGACACCAGCGAGAGTCCCGGCA
droBia1	scf7180000302155:2903866-2904079 +		---AACATCCGCCAGGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTAAGTAGACA-A--------------------------------------------------------------------------------T----------------------------------------------------TATATTTCTTG--A-------------AATAGAAATTTGAATCG-----------CTAGAACCATTTCGATTAAAACGATATAAAAGATAGACGACTG-----------------------------------------ACTA----ATTACTTTCTT---------------CTTTATG--------A---------------------ACTCAGATTG--AAGACCCTCCTGTCCGACATCTATGACACCAGCGAGAGCCCCGGCA
droTak1	scf7180000415560:26085-26240 +		TCTGATGTGCAGCAGACCATTCACGAGGTTAACAAGTTTGCCAAGCGAGCCAAGCTAATGGTAT-G-------------------TTCTAAGATTTATAATTTACAAACA-----GG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-------------ATC-----T-TTAAGTT----ACCATTT-------------------ATTTATT--------T---------------------AT--TCTTTAAGGAAA---------------------TCCTTCGCGAGGAAGCAGATG
droEle1	scf7180000491278:535426-535550 -		---AACATCCGCCAGGTGGTGGATGTGTGCGACGAGTTCAGCAAGGAAGAGAAGTAAGTGCAAG-C-------------------TTAAAAAAGAGTTTCAAAAGCCTGAAGGCTCT-----------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------TTAATTT--------------------------------------TA----AAAATTTTATT---------------ATTTATC--------A---------------------AT--------------------------------------------------------
droRho1	scf7180000762912:9607-9703 -		---TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAGTATT-----T-AAAACTA----ATT-TTT----ACCT---------CTTTTTATC--------A---------------------ACTCAGATTA--AAGACCCTCCTGTCCGACATCTATGACACCAGCGAAAGCCCCGGCA
droFic1	scf7180000453316:123571-123698 +		---ACCATCCACGAAGT------------TAATAAATTTAACAAGCGAACCAAGCTTATGGTAA-G--------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTC----TTTGAGAAAATTTTCGAGTAAAATTTTTAAAATTTGTATACAG------GAAA---------------------TCCTTCGCGAGGAAGCGGATG
droKik1	scf7180000302276:177949-178124 +		---AACATCCGCCAGGTGGTGGAGGTGTGCGACGAGTTCAGCAAGGAGGAAAAGTAAGTGAATT-TCATT------------GG---------------------------------ATACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCATATATTTTTCAACCTATAATCGA-CATATTAC-------------------CTTCCTTTT--------A---------------------ACACAGACTG--AAGAGCCTGCTGTCAGATATCTATGATACCAGCGAGAACCCCGGCA
droAna3	scaffold_13340:18283732-18283894 +		---AACATCCGCCAGGTGGTGGAGGTTTGCGACGAATTCAGCAAGGAGGAGAAGTAAGTGGAGG-GA--------------------------------------------------GTA-GTCT---------------------------------------------------------------------------------CGGA--T----------------------------------------------------------------------------------CTAACTCGGAGG----------------------------------A----ACTAATT----GTTTCATTTG-----------C--------T---------------------AACCAGATTG--AAGAGCCTCTTGTCGGACATCTATGACACCAGCGAAAATCCCGGCA
droBip1	scf7180000396708:5080888-5081053 -		---AACATCCGCCAGGTGGTGGAGGTGTGCGATGAGTTCAGCAAGGAGGAGAAGTAAGTGGGGG-----------------------------------------------------ATAGGTCTCCAAATCCATCTGGAAA--------------------CTAATGACAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGATTTCC----C-----C--------C---------------------AACTAGGTTG--AAGAGCCTCTTGTCGGACATCTATGACACCAGTGAAAATCCCGGCA
dp5	2:15953594-15953750 +		---AACATCCGCCAGGTGGTGGAAGTGTGCGATGAGTTTAGCAAGGAAGAGAAGTAGGTTTTCTTTCACC-------------------------------------------------------CCAAAAATATCCGCATA--------------------CTAAACACATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------C-----------C--------C---------------------TCGCAGGCTT--AAGAGTCTCCTGTCGGACATTTATGACACCAGCGAGAATCCCGGCA
droPer2	scaffold_0:4458199-4458355 -		---AACATCCGCCAGGTGGTGGAAGTGTGCGATGAGTTTAGCAAGGAAGAGAAGTAGGTTTTCTTTCACT-------------------------------------------------------CCAAAAATATTCGCATA--------------------CTAAACACATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------C-----------C--------C---------------------TCGCAGGCTT--AAGAGTCTCCTGTCGGACATTTATGACACCAGCGAGAATCCCGGCA
droWil2	scf2_1100000004943:11462503-11462669 +		---AATATCCGCCAAGTGGTGGAGGTTTGTGATGAATTTAGCAAGGAAGACAAGTGAGTTGATT-GCTGAAGAAAATGTAATGGA--------------------------------AAAAGACTTTA----------------------AATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----A-----TTTTT---------------CTTTTTC-------------------------------AACAGATTA--AAGAGCCTTCTGTCCGATATCTATGACACCAGCGAGAATCCCGGAA
droVir3	scaffold_12822:2074250-2074414 +		---AATATTCGCCAAGTGGTCGATGTCTGCGACGAATTCAGCAAGGAGGACAAGTAAGCATACA-G--------------------------------------------------------------------------------A---------------------------------------------------CCCCATCTCTTG--C----------------------------------------------------------------------------------CAATCCCATCTG----------------------------------A----TCCG--AACT-CCTCTATTTG-----------C--------C---------------------CTACAGACTC--AAGAGCCTGCTGTCGGACATTTACGATACCAGCGAGAATCCCGGCA
droMoj3	scaffold_6540:11110283-11110444 -		---AACATTCGCCAAGTGGTAGATGTTTGCGACGAATTCAGCAAGGAAGACAAGTATGCTAAAC-G--------------------------------------------------------------------------------TTTCAATCTCAGCCTTCCTTATACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT-------------CCCCCTATATTTT--------A---------------------ATCTAGACTC--AAGAGCCTACTGTCCGACATATATGACACCAGCGAGAACCCCGGCA
droGri2	scaffold_14624:3032292-3032456 +		---AACATCCGCCAAGTGGTTGATGTCTGCGATGAGTTCAGCAAGGAGGACAAGTAAGCATTTT-GCAAT-------------------------------------------------------GGAGTAAAATTCACTTAGTAAA----------G----CCCATCACGTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------CTTTG--------T---------------------TTGCAGGTTA--AAGAGTCTATTATCTGATATCTATGACACCAGCGAGAATCCCGGCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

---AACATCCGCCAAGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTAAGTAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTAATTGATACTAG---AATTTAG----------------------AGAAG--------------TTT-C-----TAGAATGTA-----T-TAATTTA----A-TATTT-----------------TTTCCTATC--------A---------------------ATACAGATTG--AAGACCCTCCTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGTCAGACATCTACGACACC................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGGTGGACGTTTGTGACGAGTTCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
..........GCCAAGTGGTGGACGTTTGTGACGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................GACGAGTTCAGCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............CAAGTGGTGGACGTTTGTGACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGACACCAGCGAGAGCCCCGGCA	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................GTTTGTGACGAGTTCAGCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................TGGACGTTTGTGACGAGTTCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................GACGAGTTCAGCAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................GTTTGTGACGAGTTCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTTGTGACGAGTTCAGCAAGGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................TGGTGGACGTTTGTGACGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTTTGTGACGAGTTCAGCAAGGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTACGACACCAGCGAGAGCCCCGGCA	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCTGTCAGACATCTAC......................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

---AACATCCGCCAAGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTAAGTAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTAATTGATACTAG---AATTTAG----------------------AGAAG--------------TTT-CTCTTATAAAATGTA-----T-TAATTTA----A-TATTT-----------------CCTCCTATC--------A---------------------ATACAGATTG--AAGACCCTCCTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................GACGTTTGTGACGAGTTCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
..............................GACGAGTTCAGCAAGGAGGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0
....................GGACGTTTGTGACGAGTTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGACACCAGCGAGAGCCCCGGC.	25	1	1.00	1	0	0	1	0
............................GTGACGAGTTCAGCAAGGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................ATTTA----A-TATTT-----------------CCTCCTATC--------A---------------------..........................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGACATCTACGACACCAGCGAGA.........	26	1	1.00	1	0	0	1	0
.......................CGTTTGTGACGAGTTCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
........................GTTTGTGACGAGTTCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
............................GTGACGAGTTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
..............................GACGAGTTCAGCAAGGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTG--AAGACCCTCCTGTCAGAC............................	22	1	1.00	1	1	0	0	0
..........GCCAAGTGGTGGACGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
......................ACGTTTGTGACGAGTTCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..............AGTGGTGGACGTTTGTGACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................GATACTAG---AATTTAG----------------------AGAAG--------------TTT-..........................................................................................................................................................	23	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACGACACCAGCGAGA.........	19	1	1.00	1	0	0	1	0
............CAAGTGGTGGACGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACATCTACGACACCAGCGAGAGCCC.....	28	1	1.00	1	1	0	0	0
.....................GACGTTTGTGACGAGTTCAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
........................GTTTGTGACGAGTTCAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0

dm3

---AACATCCGCCAGGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTAAGTGGACCTTAATT-------------------------------------------------------C---------------------------------------------------------------------------------------------TAATTGTA------------ATTGTCTAGTTGATACTAG---AATTTAG----------------------AGAAG--------------TTC-CTCTTATAAAATTTC-----T-TAATTTA----A-TATTT-----------------CCTCCTATC--------A---------------------ATACAGATTG--AAGACCCTCCTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................TGGTGGACGTTTGTGACGAGTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	42.00	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	12	9	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGGTGGACGTTTGTGACGAGTTCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	31.00	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	10	0	11	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAGGTGGTGGACGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	1	2	0	2	0	0	0
................TGGTGGACGTTTGTGACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	1	0	0	0	0	0
..........GCCAGGTGGTGGACGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	1	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACGACACCAGCGAGAGCCCCGGC.	27	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	11	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGGTGGACGTTTGTGACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GTGGTGGACGTTTGTGACGAGTTCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................GTTTGTGACGAGTTCAGCAAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTCCTGTCAGACATCTACTC....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GACGTTTGTGACGAGTTCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GGACGTTTGTGACGAGTTCAGCAAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GTTGATACTAG---AATTTAG----------------------AGAAG--------------TTC-..........................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CGTTTGTGACGAGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACGAGTTCAGCAAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

---AACATCCGCCAGGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTTAGTGGTCATTT-----------------------------------------------------GTT----------ATTCGGAAA--------------------CTAGATACTTAGTGTAAATTTACCCATATAGTTATACCGCATTTTTCGATTTAATCCTAAAAGTA------------ATTGTCTAATTGACACTAG---CATTTCG----------------------AGGACTGATTTGAAAGAAATGT-TTTTAATAAAATGTA-----T-TAATTTAA---ATTATTT-----------------TCTCCTATC--------A---------------------ATTTAGATTG--AAGACCCTCCTGTCAGACATCTATGACACTAGCGAGAGCCCCGGCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCTATGACACTAGCGAGA.........	22	1	6.00	6	2	0	0	0	3	1	0
........................GTTTGTGACGAGTTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	1	1	3	0	0
.....................GACGTTTGTGACGAGTTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	1	0	0	0	3	0	0
.....................GACGTTTGTGACGAGTTCAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	1	0	0	0	2	0	0
..........GCCAGGTGGTGGACGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	1	2	0	0
...................................GTTCAGCAAGGAGGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	1	1	0	0
..............................................................................................................................................................................................................................................................CTAG---CATTTCG----------------------AGGACTGAT........................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0
.....................................................GTTAGTGGTCATTT-----------------------------------------------------GTT----------ATTCGGAAA--------------------CT...............................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
............CAGGTGGTGGACGTTTGTGACGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
............................GTGACGAGTTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACTAGCGAGAGCCCCGGCA	23	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................ATTCGGAAA--------------------CTAGATACTTAGT....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCTATGACACTAGCGAGAGCCCC....	27	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACATCTATGACACTAGCGAGA.........	25	1	1.00	1	0	0	0	0	1	0	0
.....................GACGTTTGTGACGAGTTCAGCAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
........................GTTTGTGACGAGTTCAGCAAGGAGGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCAGACATCTATGACACTAGCGAGA.........	28	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATGACACTAGCGAGA.........	19	1	1.00	1	1	0	0	0	0	0	0
..............................GACGAGTTCAGCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTATGACACTAGCGAGA.........	21	1	1.00	1	0	0	0	0	1	0	0
......................ACGTTTGTGACGAGTTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTG--AAGACCCTCCTGTCAGA.............................	21	1	1.00	1	0	0	0	0	1	0	0
..........................TTGTGACGAGTTCAGCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
............CAGGTGGTGGACGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.........CGCCAGGTGGTGGACGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTAGCGAGAGCCCCGGC.	20	1	1.00	1	1	0	0	0	0	0	0
........................GTTTGTGACGAGTTCAGCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
............................GTGACGAGTTCAGCAAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATCTATGACACTAGCGAGA.........	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACATCTATGACACTAGCGAGA.........	24	1	1.00	1	0	0	0	0	1	0	0
.....................GACGTTTGTGACGAGTTCAGCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
........................GTTTGTGACGAGTTCAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACATCTATGACACTAGCGAG..........	23	1	1.00	1	0	0	0	0	1	0	0
..............................GACGAGTTCAGCAAGGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTCCTGTCAGACATCTAT......................	22	1	1.00	1	0	1	0	0	0	0	0
..............................GACGAGTTCAGCAAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................CACTAG---CATTTCG----------------------AGGACTGATTTGA....................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0

droYak3

---AACATCCGCCAGGTGGTGGACGTTTGTGATGAGTTCAGCAAGGAGGAGAAGTGAGTAGCTATT------------------------------------------------------GTT-----------TTCGGCAA--------------------CTA------------------------------------------------------TAGTTTTA------------GTTATACAATTAACCCTAG---CATTTGG----------------------AGAAGTCAATTCCAAGGAGTTTATTTTTATACAATTTT-----TGTAATTAA----A-TATTT-----------------TCTTTTATA--------A---------------------AACCAGGTTG--AAGACCCTCCTGTCAGACATCTATGACACCAGCGAGAGTCCCGGCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................GACGTTTGTGATGAGTTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	20.00	20	0	4	0	0	0	0	1	0	0	0	15
........................GTTTGTGATGAGTTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	2	0	0	0	0	2	0	0	0	0
..........GCCAGGTGGTGGACGTTTGTGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
............................GTGATGAGTTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................TGAGTTCAGCAAGGAGGAGAAGTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..............................GATGAGTTCAGCAAGGAGGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................GATGAGTTCAGCAAGGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................GATGAGTTCAGCAAGGAGGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............AGGTGGTGGACGTTTGTGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............CAGGTGGTGGACGTTTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............CAGGTGGTGGACGTTTGTGATGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........CGCCAGGTGGTGGACGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCCTCCTGTCAGACATC.........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................GTGAGTAGCTATT------------------------------------------------------GTT-----------TTCGGCAA--------------------CT...............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGACACCAGCGAGAGTCCCGGC.	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................GATGAGTTCAGCAAGGAGGAGAAGTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTATGACACCAGCGAGA.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................ATGAGTTCAGCAAGGAGGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......ATCCGCCAGGTGGTGGACGTTTGTGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATGACACCAGCGAGA.........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............CAGGTGGTGGACGTTTGTGATGAGTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................GATGAGTTCAGCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCGAGAGTCCCGGC.	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................GTGGACGTTTGTGATGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTATGACACCAGCGAGAGTCCCGGC.	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............CAGGTGGTGGACGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................A----A-TATTT-----------------TCTTTTATA--------A---------------------AACCAGGT..................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATCTATGACACCAGCGAGA.........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............CAGGTGGTGGACGTTTGTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................GACGTTTGTGATGAGTTCAGCAAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................CATTTGG----------------------AGAAGTCAATTCCAA..................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTTG--AAGACCCTCCTGTCAGACA...........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAGCGAGAGTCCCGGC.	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

---AACATCCGCCAAGTGGTGGATGTTTGTGATGAGTTCAACAAGGAAGAGAAGTAAGTATCTT-C-------------------TTCATAAGTTTGGTAACAATTCATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATATA-----T-GAAACTA----ACCATTTCCTT---------------CTTTTTC--------A---------------------AACAAGATTG--AAGACCCTCCTCTCCGACATCTATGACACCAGCGAGAGTCCCGGCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

---AACATCCGCCAGGTGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAGTAAGTAGACA-A--------------------------------------------------------------------------------T----------------------------------------------------TATATTTCTTG--A-------------AATAGAAATTTGAATCG-----------CTAGAACCATTTCGATTAAAACGATATAAAAGATAGACGACTG-----------------------------------------ACTA----ATTACTTTCTT---------------CTTTATG--------A---------------------ACTCAGATTG--AAGACCCTCCTGTCCGACATCTATGACACCAGCGAGAGCCCCGGCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTGATGTGCAGCAGACCATTCACGAGGTTAACAAGTTTGCCAAGCGAGCCAAGCTAATGGTAT-G-------------------TTCTAAGATTTATAATTTACAAACA-----GG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-------------ATC-----T-TTAAGTT----ACCATTT-------------------ATTTATT--------T---------------------AT--TCTTTAAGGAAA---------------------TCCTTCGCGAGGAAGCAGATG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

---AACATCCGCCAGGTGGTGGATGTGTGCGACGAGTTCAGCAAGGAAGAGAAGTAAGTGCAAG-C-------------------TTAAAAAAGAGTTTCAAAAGCCTGAAGGCTCT-----------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------TTAATTT--------------------------------------TA----AAAATTTTATT---------------ATTTATC--------A---------------------AT--------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

---TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAGTATT-----T-AAAACTA----ATT-TTT----ACCT---------CTTTTTATC--------A---------------------ACTCAGATTA--AAGACCCTCCTGTCCGACATCTATGACACCAGCGAAAGCCCCGGCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

---ACCATCCACGAAGT------------TAATAAATTTAACAAGCGAACCAAGCTTATGGTAA-G--------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTCTC----TTTGAGAAAATTTTCGAGTAAAATTTTTAAAATTTGTATACAG------GAAA---------------------TCCTTCGCGAGGAAGCGGATG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

---AACATCCGCCAGGTGGTGGAGGTGTGCGACGAGTTCAGCAAGGAGGAAAAGTAAGTGAATT-TCATT------------GG---------------------------------ATACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCATATATTTTTCAACCTATAATCGA-CATATTAC-------------------CTTCCTTTT--------A---------------------ACACAGACTG--AAGAGCCTGCTGTCAGATATCTATGATACCAGCGAGAACCCCGGCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

---AACATCCGCCAGGTGGTGGAGGTTTGCGACGAATTCAGCAAGGAGGAGAAGTAAGTGGAGG-GA--------------------------------------------------GTA-GTCT---------------------------------------------------------------------------------CGGA--T----------------------------------------------------------------------------------CTAACTCGGAGG----------------------------------A----ACTAATT----GTTTCATTTG-----------C--------T---------------------AACCAGATTG--AAGAGCCTCTTGTCGGACATCTATGACACCAGCGAAAATCCCGGCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATCTATGACACCAGCGA...........	21	1	1.00	1	1	0	0	0	0	0
.............................CGACGAATTCAGCAAGGAGGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--AAGAGCCTCTTGTCGGAC............................	21	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACACCAGCGAAAATCCCGGC.	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCTATGACACCAGCGA...........	20	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCGAAAATCCCGGCA	20	1	1.00	1	1	0	0	0	0	0
.....CATCCGCCAGGTGGTGGAGGTTTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
......ATCCGCCAGGTGGTGGAGGTTTGCGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--AAGAGCCTCTTGTCGGACATC.........................	24	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTG--AAGAGCCTCTTGTCGGACA...........................	22	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACACCAGCGAAAATCCCGGC.	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATGACACCAGCGAAA.........	19	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCTCTTGTCGGACATCT........................	20	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTG--AAGAGCCTCTTGTCGGACAT..........................	24	1	1.00	1	0	0	0	0	0	1
.................GGTGGAGGTTTGCGACGAATTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........CCAGGTGGTGGAGGTTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.....CATCCGCCAGGTGGTGGAGGTTTGCGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCTCTTGTCGGACATCTA.......................	22	1	1.00	1	1	0	0	0	0	0
...............GTGGTGGAGGTTTGCGACGAATTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0

droBip1

---AACATCCGCCAGGTGGTGGAGGTGTGCGATGAGTTCAGCAAGGAGGAGAAGTAAGTGGGGG-----------------------------------------------------ATAGGTCTCCAAATCCATCTGGAAA--------------------CTAATGACAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTGATTTCC----C-----C--------C---------------------AACTAGGTTG--AAGAGCCTCTTGTCGGACATCTATGACACCAGTGAAAATCCCGGCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

---AACATCCGCCAGGTGGTGGAAGTGTGCGATGAGTTTAGCAAGGAAGAGAAGTAGGTTTTCTTTCACC-------------------------------------------------------CCAAAAATATCCGCATA--------------------CTAAACACATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------C-----------C--------C---------------------TCGCAGGCTT--AAGAGTCTCCTGTCGGACATTTATGACACCAGCGAGAATCCCGGCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............CAGGTGGTGGAAGTGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................GTTTAGCAAGGAAGAGAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATGACACCAGCGAGAATC......	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................GTTTAGCAAGGAAGAGAAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--AAGAGTCTCCTGTCGGACATTTA.......................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTATGACACCAGCGAGA.........	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................TGGTGGAAGTGTGCGATGAGTTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	1	0	1	0	0	0
.........CGCCAGGTGGTGGAAGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTCTCCTGTCGGACATT.........................	20	1	2.00	2	0	0	0	0	1	0	1	0	0	0
.........CGCCAGGTGGTGGAAGTGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0	0	0	0
................TGGTGGAAGTGTGCGATGAGTTTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GTGGTGGAAGTGTGCGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................GAAGTGTGCGATGAGTTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTATGACACCAGCGAGAA........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GGTGGTGGAAGTGTGCGATGAGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................GAAGTGTGCGATGAGTTTAGCAAGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................GATGAGTTTAGCAAGGAAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTCTCCTGTCGGACATT.........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................T--AAGAGTCTCCTGTCGGACAT..........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCGAGAATCCCGGC.	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATTTATGACACCAGCGAGA.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GTGCGATGAGTTTAGCAAGGAAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTCTCCTGTCGGACAT..........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................GAAGTGTGCGATGAGTTTAGCAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................GAAGTGTGCGATGAGTTTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................AGTGTGCGATGAGTTTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--AAGAGTCTCCTGTCGGA.............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................AAGTGTGCGATGAGTTTAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................AGTGTGCGATGAGTTTAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................AGTTTAGCAAGGAAGAGAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................GATGAGTTTAGCAAGGAAGAGAAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTCTCCTGTCGGACA...........................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................GCGATGAGTTTAGCAAGGAAGAGAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................GATGAGTTTAGCAAGGAAGAGAAGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACATTTATGACACCAGCGAGA.........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................T--AAGAGTCTCCTGTCGGACAC..........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........CCGCCAGGTGGTGGAAGTGTGCGATGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............CAGGTGGTGGAAGTGTGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....ACATCCGCCAGGTGGTGGAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--AAGAGTCTCCTGTCGGA.............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................TTTAGCAAGGAAGAGAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

---AACATCCGCCAGGTGGTGGAAGTGTGCGATGAGTTTAGCAAGGAAGAGAAGTAGGTTTTCTTTCACT-------------------------------------------------------CCAAAAATATTCGCATA--------------------CTAAACACATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------C-----------C--------C---------------------TCGCAGGCTT--AAGAGTCTCCTGTCGGACATTTATGACACCAGCGAGAATCCCGGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................T--AAGAGTCTCCTGTCGGA.............................	18	1	5.00	5	5	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCGGACATTTATGACACCAGCGAGA.........	28	1	4.00	4	4	0	0	0	0	0
..............GGTGGTGGAAGTGTGCGATGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTCTCCTGTCGGAC............................	18	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACATTTATGACACCAGCGAGA.........	24	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--AAGAGTCTCCTGTCGGA.............................	19	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGTCGGACATTTATGACACCAGC.............	27	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--AAGAGTCTCCTGTCGG..............................	18	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACATTTATGACACCAGC.............	20	1	2.00	2	2	0	0	0	0	0
..............GGTGGTGGAAGTGTGCGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGTCGGACATTTATGACACC................	24	1	2.00	2	2	0	0	0	0	0
...............GTGGTGGAAGTGTGCGATGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..........GCCAGGTGGTGGAAGTGTGCGATGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..........GCCAGGTGGTGGAAGTGTGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................GTTTAGCAAGGAAGAGAAGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
........................GTGTGCGATGAGTTTAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................GAAGTGTGCGATGAGTTTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............AGGTGGTGGAAGTGTGCGATGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTT--AAGAGTCTCCTGTCGGAC............................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTATGACACCAGCGAG..........	19	1	1.00	1	0	0	1	0	0	0
.....................GAAGTGTGCGATGAGTTTAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--AAGAGTCTCCTGTCGGACA...........................	22	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGTCGGACATTTATGACA..................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAGCGAGAATCCCG...	19	1	1.00	1	0	1	0	0	0	0
............CAGGTGGTGGAAGTGTGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...............................ATGAGTTTAGCAAGGAAGAGAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................T--AAGAGTCTCCTGTCGGG.............................	18	1	1.00	1	1	0	0	0	0	0
............................GCGATGAGTTTAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTATGACACCAGCGAGA.........	20	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--AAGAGTCTCCTGTCGGACA...........................	21	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................TT--AAGAGTCTCCTGTCGGG.............................	19	1	1.00	1	1	0	0	0	0	0
.................GGTGGAAGTGTGCGATGAGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..........GCCAGGTGGTGGAAGTGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........CCAGGTGGTGGAAGTGTGCGATGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--AAGAGTCTCCTGTCGGACAT..........................	23	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................T--AAGAGTCTCCTGTCGGACATTTATGAC...................	28	1	1.00	1	1	0	0	0	0	0
..............................GATGAGTTTAGCAAGGAAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.....................GAAGTGTGCGATGAGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
...................................GTTTAGCAAGGAAGAGAAGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1

droWil2

---AATATCCGCCAAGTGGTGGAGGTTTGTGATGAATTTAGCAAGGAAGACAAGTGAGTTGATT-GCTGAAGAAAATGTAATGGA--------------------------------AAAAGACTTTA----------------------AATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----A-----TTTTT---------------CTTTTTC-------------------------------AACAGATTA--AAGAGCCTTCTGTCCGATATCTATGACACCAGCGAGAATCCCGGAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................GATGAATTTAGCAAGGAAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	1	0	2	1	0
............CAAGTGGTGGAGGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	2	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTATGACACCAGCGAGAATCCCGGA.	28	1	3.00	3	0	3	0	0	0
..........GCCAAGTGGTGGAGGTTTGTGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0
.....................GAGGTTTGTGATGAATTTAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
..........GCCAAGTGGTGGAGGTTTGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0
..............AGTGGTGGAGGTTTGTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
..............................GATGAATTTAGCAAGGAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATGACACCAGCGAG..........	18	1	1.00	1	0	0	0	1	0
..........GCCAAGTGGTGGAGGTTTGTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..........GCCAAGTGGTGGAGGTTTGTGATGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..........GCCAAGTGGTGGAGGTTTGTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...........................TGTGATGAATTTAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATCTATGACACCAGCGAG..........	22	1	1.00	1	0	0	1	0	0
...............................ATGAATTTAGCAAGGAAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
......ATCCGCCAAGTGGTGGAGGTTTGTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
..............AGTGGTGGAGGTTTGTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGATATCTATGACACCAGCGAG..........	28	1	1.00	1	0	1	0	0	0
............CAAGTGGTGGAGGTTTGTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.........CGCCAAGTGGTGGAGGTTTGTGATGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGTCCGATATCTATGACA..................	21	1	1.00	1	0	0	0	1	0
.....................GAGGTTTGTGATGAATTTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGATATCTATGACACCAGCGAGA.........	27	1	1.00	1	0	0	0	1	0
............CAAGTGGTGGAGGTTTGTGATGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................TTA--AAGAGCCTTCTGTCCG..............................	19	1	1.00	1	0	0	0	0	1
.....................................................................................................................AAAAGACTTTA----------------------AATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA----A-----TT.................................................................................................................	21	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTTCTGTCCGATATCT........................	19	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCTTCTGTCCGATATC.........................	20	1	1.00	1	0	0	0	0	1
.....................GAGGTTTGTGATGAATTTAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGATATCTATGACACCAGCGAGA.........	26	1	1.00	1	0	0	0	1	0
...AATATCCGCCAAGTGGTGGAGGTTTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
...............GTGGTGGAGGTTTGTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTATGACACCAGCGAGAATCC.....	25	1	1.00	1	0	0	0	1	0
....................GGAGGTTTGTGATGAATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
....ATATCCGCCAAGTGGTGGAGGTTTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
............CAAGTGGTGGAGGTTTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..............................GATGAATTTAGCAAGGAAGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTA--AAGAGCCTTCTGTC................................	18	1	1.00	1	0	0	0	1	0
.........CGCCAAGTGGTGGAGGTTTGTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCGAGAATCCCGGAA	20	1	1.00	1	0	0	0	1	0
............CAAGTGGTGGAGGTTTGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTA--AAGAGCCTTCTGTCCGA.............................	20	1	1.00	1	0	0	0	1	0

droVir3

---AATATTCGCCAAGTGGTCGATGTCTGCGACGAATTCAGCAAGGAGGACAAGTAAGCATACA-G--------------------------------------------------------------------------------A---------------------------------------------------CCCCATCTCTTG--C----------------------------------------------------------------------------------CAATCCCATCTG----------------------------------A----TCCG--AACT-CCTCTATTTG-----------C--------C---------------------CTACAGACTC--AAGAGCCTGCTGTCGGACATTTACGATACCAGCGAGAATCCCGGCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........................CTGCGACGAATTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAAGTGGTCGATGTCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TC--AAGAGCCTGCTGTCGGAC............................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
......ATTCGCCAAGTGGTCGATGTCTGCGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACCAGCGAGAATCCCGGCA	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAAGTGGTCGATGTCTGCGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGCTGTCGGACATTTACGAT...................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTGCTGTCGGACATTTACGATACC................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GGTCGATGTCTGCGACGAATTCAGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CGCCAAGTGGTCGATGTCTGCGACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CGCCAAGTGGTCGATGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCGGACATTTACGATACCAGC.............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCTGCTGTCGGACATTTACGATACC................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGATGTCTGCGACGAATTCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCGGACATTTACGATA..................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAGAGCCTGCTGTCGGACAT..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAGAGCCTGCTGTCGGA.............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACATTTACGATACCAGCGAGAAT.......	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAAGTGGTCGATGTCTGCGACGAATTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTACGATACCAGCGAGAATCCCGG..	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACT-CCTCTATTTG-----------C--------C---------------------CTACAG....................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTCGCCAAGTGGTCGATGTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CTGCGACGAATTCAGCAAGGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGGTCGATGTCTGCGACGAATTC............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCAGCGAGAATCCCGGC.	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGTCTGCGACGAATTCAGCAAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAGAGCCTGCTGTCGGACA...........................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAGAGCCTGCTGTCGGAC............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTC--AAGAGCCTGCTGTCGGAC............................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CGCCAAGTGGTCGATGTCTGCGACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GATGTCTGCGACGAATTCAGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTCTGCGACGAATTCAGCAAGGAGGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACCAGCGAGAATCCCGGC.	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TC--AAGAGCCTGCTGTCGGACAT..........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................TCTGCGACGAATTCAGCAAGGAGGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AAGTGGTCGATGTCTGCGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AGTGGTCGATGTCTGCGACGAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTCTGCGACGAATTCAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GACGAATTCAGCAAGGAGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CGAATTCAGCAAGGAGGACAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........CGCCAAGTGGTCGATGTCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AGTGGTCGATGTCTGCGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TCGCCAAGTGGTCGATGTCTGCGACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCCTGCTGTCGGAC............................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCTTG--C----------------------------------------------------------------------------------CAATCCCATCTG----------------------------------A----TCCG--AACT-CCTCTATTTG-----------C--------C---------------------CTACAG....................................................	45	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATTTACGATACCAGCGAGA.........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............AGTGGTCGATGTCTGCGACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CGAATTCAGCAAGGAGGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGCGAGAATCCCGGC.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AATTCAGCAAGGAGGACAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

---AACATTCGCCAAGTGGTAGATGTTTGCGACGAATTCAGCAAGGAAGACAAGTATGCTAAAC-G--------------------------------------------------------------------------------TTTCAATCTCAGCCTTCCTTATACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT-------------CCCCCTATATTTT--------A---------------------ATCTAGACTC--AAGAGCCTACTGTCCGACATATATGACACCAGCGAGAACCCCGGCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................GGTAGATGTTTGCGACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	1	0	0	0	0	2
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATATGACACCAGCGAGAACCCCGG..	27	1	2.00	2	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTC--AAGAGCCTACTGTCCGAC............................	21	1	2.00	2	2	0	0	0	0	0
.....................GATGTTTGCGACGAATTCAGCAAGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............AAGTGGTAGATGTTTGCGACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTC--AAGAGCCTACTGTCCGACAT..........................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGACACCAGCGAGAACCC.....	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGACACCAGCGAGAACCCCGGC.	27	1	1.00	1	1	0	0	0	0	0
.................GGTAGATGTTTGCGACGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................GACGAATTCAGCAAGGAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTC--AAGAGCCTACTGTCCGAC............................	22	1	1.00	1	1	0	0	0	0	0
...............GTGGTAGATGTTTGCGACGAATTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................TGCGACGAATTCAGCAAGGAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................T-------------CCCCCTATATTTT--------A---------------------ATCT......................................................	19	1	1.00	1	0	0	0	0	1	0
.......TTCGCCAAGTGGTAGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATATATGACACCAGCGAGAACCCC....	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TC--AAGAGCCTACTGTCCGACATA.........................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGTCCGACATATATGACACCAGC.............	27	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGACACCAGCGAGAACCCC....	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATATGACACCAGCGAGAACCCC....	25	1	1.00	1	0	0	0	0	0	1
......ATTCGCCAAGTGGTAGATGTTTGCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATATGACACCAGCGAGAACCC.....	24	1	1.00	1	0	0	0	0	0	1

droGri2

---AACATCCGCCAAGTGGTTGATGTCTGCGATGAGTTCAGCAAGGAGGACAAGTAAGCATTTT-GCAAT-------------------------------------------------------GGAGTAAAATTCACTTAGTAAA----------G----CCCATCACGTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------CTTTG--------T---------------------TTGCAGGTTA--AAGAGTCTATTATCTGATATCTATGACACCAGCGAGAATCCCGGCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............AAGTGGTTGATGTCTGCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACACCAGCGAGAATCCC....	20	1	1.00	1	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATCTATGACACCAGCG............	21	1	1.00	1	0	1
..........GCCAAGTGGTTGATGTCTGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTGATATCTATGACACC................	21	1	1.00	1	1	0

dsi_6471

3r:1751397-1751477 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads