ID:

dsi_6464

 Coordinate:

3l:20819350-20819499 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_20819500_20819831_-]; exon [3l_20819500_20819831_-]; intron [3l_20819012_20819499_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CATACCTCGTCGCGAGAGCCATTCGCATTTCCACCGATAAGGACAATGTGGTAAGTTGCGGTCAGGTCGGCGAGTGAGCTCATCGCCCACCTATGCTGGGTGACTTCTTCGTTGTCTCCGCTGATTCCATAAATTTTCGACACTGTCTTTGAAAATATTCCAACAACGTAGAAGGTAAAAATCGCCGGGCAGCGACTACGACATGGCTAAACTTAGCACTTTGTCGCCATTACCTCAATGTGGTGGTGGT
**************************************************(((.(((((....((((.(((((.((....))))))).)))).((((.((((((((((.(((((((......))........((((((((........)))))))).......))))).))))).......))))).)))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
................................................................................................................................................................................................................AAACTTAGCACTTTGTCGCC...................... 20 0 1 5.00 5 5 0 0 0 0 0 0 0 0
...............................CACCGATAAGGACAATGTGGATACTT................................................................................................................................................................................................. 26 3 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................CATTTCCACCGATAAGGAC.............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.ATACCTCGTCGCGAGAGCCATTCGCAT.............................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.ATACCTCGTCGCGAGAGCC...................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
CATACCTCGTCGCGAGAGC....................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.ATACCTCGTCGCGAGAGC....................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.ATACCTCGTCGCGAGAGCCATTCGC................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TACCTCGTCGCGAGAGCCATTCGCAT.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................ATTCGCATTTCCACCGATAAGGACAAT........................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................CCACCGATAAGGACAATGTGG....................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................TAAGGTGGGCGAGTGAACTC......................................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................CCACTGTCTTTGAAAA............................................................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................TGTCTTTGAAAATATGTCAA....................................................................................... 20 2 5 0.20 1 0 0 0 0 1 0 0 0 0
.............................................................................................TGCTGGATGACATCTTTGTT......................................................................................................................................... 20 3 19 0.11 2 0 0 0 0 0 2 0 0 0
........................................................TGCCGTCCGGTCGGGGAGTG.............................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 1 0 0
..........................................................CGTTCAGGTCGGCTAGTGG............................................................................................................................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 1 0
.............................................................TAAGGTGGGCGAGTGAACT.......................................................................................................................................................................... 19 3 13 0.08 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................CACTGTCTTTGAAAAGC............................................................................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TTGTCGCCATCTCCTCACT........... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.................................................................GTCGGCTAGTGAGCGCCT....................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTATGGAGCAGCGCTCTCGGTAAGCGTAAAGGTGGCTATTCCTGTTACACCATTCAACGCCAGTCCAGCCGCTCACTCGAGTAGCGGGTGGATACGACCCACTGAAGAAGCAACAGAGGCGACTAAGGTATTTAAAAGCTGTGACAGAAACTTTTATAAGGTTGTTGCATCTTCCATTTTTAGCGGCCCGTCGCTGATGCTGTACCGATTTGAATCGTGAAACAGCGGTAATGGAGTTACACCACCACCA
**************************************************(((.(((((....((((.(((((.((....))))))).)))).((((.((((((((((.(((((((......))........((((((((........)))))))).......))))).))))).......))))).)))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M025
embryo
 SRR1275487
Male larvae		 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
...............CTCGGTAAGCGTCAAAGTG........................................................................................................................................................................................................................ 19 2 3 269.33 808 566 200 13 0 6 10 12 0 1 0 0 0
................TCGGTAAGCGTCAAAGTG........................................................................................................................................................................................................................ 18 2 7 90.14 631 409 120 56 0 13 16 5 0 7 2 2 1
...............CTCGGTAAGCGTCAAAGTGTC...................................................................................................................................................................................................................... 21 3 4 13.50 54 1 0 49 0 1 0 0 0 2 1 0 0
................TCGGTAAGCGTCAAAGTGTC...................................................................................................................................................................................................................... 20 3 13 8.23 107 6 6 84 0 4 0 0 0 7 0 0 0
...............CTCGGTAAGCGTCAAAGTGGC...................................................................................................................................................................................................................... 21 2 1 7.00 7 1 0 2 4 0 0 0 0 0 0 0 0
................TCGGTAAGCGTCAAAGTGGC...................................................................................................................................................................................................................... 20 2 1 7.00 7 0 0 2 0 1 0 0 3 0 1 0 0
...............CTCGGTAAGCGTCAAAGTGG....................................................................................................................................................................................................................... 20 2 1 5.00 5 2 0 0 3 0 0 0 0 0 0 0 0
...............CTCGGTAAGCGTCAAAGTGGCA..................................................................................................................................................................................................................... 22 3 1 4.00 4 0 0 0 3 1 0 0 0 0 0 0 0
................TCGGTAAGCGTCAAAGTGGCA..................................................................................................................................................................................................................... 21 3 4 1.50 6 0 0 5 1 0 0 0 0 0 0 0 0
...............CTCGGTAAGCGTCAAAGTGT....................................................................................................................................................................................................................... 20 3 9 1.33 12 3 0 7 0 1 0 0 0 1 0 0 0
...............CTCGGTAAGCGTCAAGGTG........................................................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............CTCGGTAAGCGTCAAGGTGA....................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................TCGGTAAGCGTCAAAGTGG....................................................................................................................................................................................................................... 19 2 3 1.00 3 0 0 0 2 0 0 0 1 0 0 0 0
................TCGGTAAGCGTCAAAGTGTCT..................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................AGAGGGTGGATACGA......................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................GCGGCCCTTCGCTGA..................................................... 15 1 10 0.30 3 0 0 0 0 0 0 0 0 0 0 3 0
...............CTCGGTAAGCGTCAA............................................................................................................................................................................................................................ 15 1 13 0.23 3 0 0 2 0 1 0 0 0 0 0 0 0
..................................................................................................................AGGGGCGACTAAGGT......................................................................................................................... 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GGCCCTTCGCTGATTCTCT............................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................AGGTAGCTATTCCTG.............................................................................................................................................................................................................. 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
...............CTCGGTAAGCGTCAAATTG........................................................................................................................................................................................................................ 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
...............CTCGGTAAGCGTTAAAGTGA....................................................................................................................................................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GGCCCTTCGCTGATTCTC................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...............CTCGATAAGCGTCAAAGTG........................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
................TCGGTAAGCGTCAAATTGG....................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:20819300-20819549 - dsi_6464 CATACCTCGTCGCGAGAGCCATTCGCATTTCCACCGATAAGGACAATGTGGTAAGTTGC----------GGTC-A---------------GGTCGGC--GAG---TGAGCTCATCGCCCACCTATGCTGGGTGACT--TCT-----TCGTTGTCTCCG----------CTG-ATT------------CCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--TCTTTGAAAAT-----ATTCCAACAACGTA--GAAGGTAAAAA-----------------------------T-----CGCCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCATTACCTCAATGTGGTGGT-------------------GGT
droSec2 scaffold_11:1222257-1222506 - CATACCTCGTCGCGAGAGCCATTCGCATTTCCACCGATAAGGACAATGTGGTAAGTTGC----------GGTC-A---------------GGTCGGC--GAG---TGAGCTCATCGCTCACCTATGCTGGGTGACT--TCT-----TCGTTGTCTCCG----------CTG-ATT------------CCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--TCTTTGAAAAT-----ATTCCAACAACGTA--GAAGGTAAAAA-----------------------------T-----CGGCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCATTACCTCAATGTGGTGGT-------------------GGT
dm3 chr3L:21276046-21276295 - CATACCTTGTCGCGAGAGCCATTCGAATTTCCACCGATAAGGACAATGTGGTAAGTTGT----------GGTC-A---------------GGTCGGC--GAG---TGAGCTCATCGCCCACCAATGCTGAGTGACT--TCT-----TCGTTGTCTCCG----------CTG-ATT------------CCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--CCTTTGAAAAT-----ATTCCAACAACGTA--GAAGTTAAAAA-----------------------------T-----CGCCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCATTAACTCAATGTGGTGGT-------------------GGT
droEre2 scaffold_4784:20951912-20952161 - TATACCTCGTGGTGAGAGCCATTCGCATTTCCACCGATAAGGACAATGTGGTAAGTTGT----------GGTC-A---------------TGTCTGC--GGG---TGAGCTCATCGTCCGCTTATGTTGGGTGACT--TCT-----CCGTTGTCTTTT----------CTG-ATT------------CCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--TCTCTGAAAAT-----ATTCGAACAACGTA--AAAAGTCAAAA-----------------------------T-----CGGCGGGCAG------TG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCAATAACTCAATGTGGTGGA-------------------AGT
droYak3 v2_chr3L_random_027:26398-26630 - TATACCTCGTCGTGAGAGCCATTCGCATTTCCACCGATAAGGACAATGTGGTAAGTTG-----------------------------------------------TGAGCTCATCGTCCACTTATGTTGGGTGACT--TCT-----CCGTTGTCTATT----------CTG-ATT------------TCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--TCTTTGAAAA------ATTCCAGCAACGTA--GAAAGCAGAAG-----------------------------T-----CGGCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCATTAACTCAATGTGGTGGT-------------------GGT
droEug1 scf7180000409711:4730306-4730563 + TATACCTTCTGATGAGAGCCACTCGCATTGCTAACGATAAGGATAGTGCGGTAAGTAAT----------GGTC-G--------------GGGTCAGC--GGG---TGAGCTCATCACCCACTTATGCTAGCAGGC-------------TTTGTCTTCT----------GCG-ATT------------TCATAAA-----TTGCC---------GCC-------------A----------------------------CTG--TCTATGAAAATGGAAGAATCGAAGAACGAATGAAAAAAACAAA-----------------------------T-----CGGTGGACAAAAATTCCG---ACTACGACATGGCTAAACTTAGCAC---TTTGTGGCCATAAACTCAATGTGGTGGT-------------------GGT
droBia1 scf7180000302193:4755796-4756022 + TGTACCTTCTCATGAGAGCCACTCGCATTGCCACCGATAAGGATGGTCTGGTAAGTGGT----------GGTG-G--------------GGGTCAGT--GGG---TGAGCTCATCGCCCCCTTATGCTGCCTGGC-------------GTTGTCTTGT----------CCG-ATT------------CCATAAA-----TTTCC---------GCC-------------A----------------------------CTG--TCTGTGAAAAT-----ATTCGAGCAACGCA--GAAA----------------------------------------------------------CG---ACTACGACATGGCTAAACTTAGCAT---TTTGCCGCAATTAACTCAATGTGGTGGT-------------------GGT
droTak1 scf7180000414337:297464-297712 + TGTACCTGCTCATGAGGGCCACTCGCATTGCCACCGATAAGGATGGTGTGGTAAGTGGT----------GGTC-GGTAGTCGGTGGTGGGGGTCAGT--GGG---TGAGCTCATCGCCCACTTATGCTGGCTGGC-------------GTTGTCTTCT----------TCG-ATT------------TCATAAA-----TTTCC---------GCC-------------A----------------------------CTG--TCTGTGAAAAT-----ATTCGAGCAACGCA--GAAAGTAAAAT-----------------------------T---------------------CG---ACTACGACATGGCTAAACTTAGCAT---TTTGTCGCAATTAACTCAATGTGGTGGT-------------------GGT
droEle1 scf7180000491193:2067329-2067570 + TTTATCTGCTGATGAGAGCCGCTCGCATTGCCACCGATAAGGATAGTGTGGTAAGTGGT----------GGTC-GT--------ATTCGGGGTCAGT--GGG---TGAGCTCATCGCCCACTTATGCTCGCTGGC-------------GTTGTCTTCT----------CCG-ATT------------CCATTAA-----TTTCC---------GCC-------------A----------------------------CTG--TCTGTGAAAAT-----ATTCCAACAACGCA--GAAAA-------------------------------------------ACGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TCTGTCGCCAATAACTCGGAATGGTGGT-------------------GGT
droRho1 scf7180000777887:20323-20570 + TTTACCTGCTGATGCGAGCCACTCGCATTGCCACCGATAAGGATGGTGTGGTAAGTGGT----------GGTC-G--------------GGGTCAGTC-AGG---TGAGCTCATCGCCCACTTATGCTCGCTGGC-------------TTTGTCTTCT----------CCC-ACT------------CCATAAA-----TTTC------------C-------------A----------------------------TTG--TCTGTGAAAAC-----ATTCGAACAACGCA--GAAAGTGAATT-----------------------------TCAGAACCTCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCAATAATTCAGAATGGTGGT-------------------GGT
droFic1 scf7180000453929:423696-423933 - TTTACCTCCTCATGAGAGCCACTCGCATTGCCACCGATAAGGATGGTTTGGTAGGTAGC----------AGTG-G--------------GGGTCAGTCGGGGTGGTGAGCTCATCGCCCACTTATGCTCGCTGGC-------------GTTGTCTTCT----------CCGGATT------------CCATAAA-----TTTCC---------GCC-------------A----------------------------CTG--TCTGCTAAAAT-----ATTCGAACAACGCA--GAAAGTGAAAT-----------------------------A-----AATTGGGTGG------TG---ACTACAACATGGCTAAACTTAGCGC---TTTGTCGCCATAAAC--------------------------------GGT
droKik1 scf7180000302260:37078-37344 + TCTACCTGCTGGTGCGAGCCACGCGCATTGCCACCGATAAGGATGGTGCGGTAAGTTGT----------CACCTG--------------AGGTCAGC--GGG---TGACCTCATCGC-------------------------------GGTGTCTTCT----------CCG-ATTCCGATTCCGATTCGATTCA-----TATTC---------CAC-------------T---GAT----------------------TTG--TCTGTTAAAAT-----ATTCGAACAACGCA--GAAAGTGAAAT-----------------------------TCATACGGCCGGGCAA------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGCCGCCATTAACTCACCCTAGTAGTGGTGCTGGTTGCTGGTAATGGT
droAna3 scaffold_13337:8420690-8420953 + TCTACCTGCTGATCAGAGCCACTCGCATTGCCGCCGATAAGGATGGTGTGGTAAGTGAC----------AGTC-AA--------GGTGGAGGTCA-T--CGA---TGATTTCATCGTCCACCTATGCTACGGGCC-------------ATTGTCTATTTGGGCGGGCTCTA-GTT------------CTATAAA-----TTCCT---------CTG------------------AA----------------------ATG--TCTGTAAGAAT-----ATTTGTTAGGCGCC--GAAAGTGAAAT-----------------------------T-----CATTGGCCAG------TGAGTACTACGGCATGGCTAAACATAGCAC---CGTGTCTCCATAAACTTACCCTGGTGGT-------------------GGT
droBip1 scf7180000396541:566527-566766 + TCTACCTGCTGATCAGAGCCACTCGCATTGCCGCCGATAAGGATGGTGTGGTAAGTGAC----------AGTC-AA--------GGTGGAGGTCA-T--CGA---TGATTTCATCGTCCACTTATGCTACG-GGT-------------ATTGTCTATT----------CTG-AA-----------------------------------------A-------------G----------------------------AAG--TCTGAAAGAAT-----ATTCGTAAGAAGCC--GTAAGTGAAAT-----------------------------T-----CATTGGCCAGCAG---TGAGTACTACGACATGGCTAAACATAGCAC---CTTGGCTCCATAAACTTAGCCTGGTGGT-------------------GGT
dp5 XR_group6:12640131-12640410 - TCTACCTCTCGATGCGAGCCACGCGCATTGCCACCGATAAGGATAGTGAGGTAAGATTCCTAAGGGGAAATTT-AA--------GG-------------GGGAGATGACTTCATCGGACACTTATGCTG----AC-------------ATTATCAATT----------CCG-GCA------------TTATACA-----TGTTG---------GACAGCGAGTAAGCCCAAGAGAGCTATGGGCACGGTGTTGCGGTGTTGGCTCTCCAAAAATACAATAATTCGACAACGCA--GAAAGAGAAAT-----------------------------T-----CCTTCAGCAG------CG---ACTACGACACGACTAAACATAGC-------TGTGGCCTA-------------TAGT-------------------GGT
droPer2 scaffold_33:661611-661890 - TCTACCTCTCGATGCGAGCCACGCGCATTGTCACTGATAAGGATAGTGAGGTAAGATTCCTAAGGGGAAATTT-AA--------GG-------------GGGAGATGACTTCATCGGACACTTATGCTG----AC-------------ATTATCAATT----------CCG-ACA------------TTATACA-----TGTTG---------GACAGCTAGTAAGCCCAAGAGAGCTATGGGCACGGTGTTGTGGTGTTGGCTCTCCAAAAATACAATAATTCGACAACGCA--GAAAGAGAAAT-----------------------------T-----CCTTCAGCAG------CG---ACTACGAAACGACTAAACATAGC-------TGTGGCCTA-------------TAGT-------------------GGT
droWil2 scf2_1100000004511:9072012-9072067 - TCTATTTACTAATACGAGCTGTTCGCATTGCCACCGATAAGGATGGAACGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:20522748-20523049 - dvi_20785 TCGTTTTGCTGGTGCGCGGCGTGCAAATAGAGCATGATAAGGATGGTTCGGTGAGTGTT----------TGAC-T-----------------AAAAC--GGG---TGACATCATTATCT-------------GGCATTGCCTCATGTAATTGTTTCATAAACTG-----GC-GTG------------TCACACAGCTAAGCTCCGCCCACCCGAAAAGCAACTAAGATCAA-TGAG----------------------CTG--TTTCCAAAAAT-----ATGTAGACAACTAA--C---------TCGAGACGCTCAGGTGTGTGTAAGCGATATT-----AAATTGCCGC------CG---ACTACGACATGTCTAAACTTAGCCCCCGTGTGTGCACATGTACCCAACGCCAAGGA-------------------GCT
droMoj3 scaffold_6680:8230644-8230699 - GCTATCTGCTGGCACGAGCTGTGCAAATTTCCCAAGATAAGGACGGTTCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:11984361-11984416 + TCGGCTTAATAGTGCGCGCTGTACGCATTGGCCTAGATAAGGATGGTTCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CATACCTCGTCGCGAGAGCCATTCGCATTTCCACCGATAAGGACAATGTGGTAAGTTGC----------GGTC-A---------------GGTCGGC--GAG---TGAGCTCATCGCCCACCTATGCTGGGTGACT--TCT-----TCGTTGTCTCCG----------CTG-ATT------------CCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--TCTTTGAAAAT-----ATTCCAACAACGTA--GAAGGTAAAAA-----------------------------T-----CGCCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCATTACCTCAATGTGGTGGT-------------------GGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................AAACTTAGCAC---TTTGTCGCC.........................................2015.00500500000000000000
.........................CATTTCCACCGATAAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.ATACCTCGTCGCGAGAGCCATTCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.ATACCTCGTCGCGAGAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
CATACCTCGTCGCGAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.ATACCTCGTCGCGAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.ATACCTCGTCGCGAGAGCCATTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..TACCTCGTCGCGAGAGCCATTCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
....................ATTCGCATTTCCACCGATAAGGACAAT.........................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
..............................CCACCGATAAGGACAATGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.......................................................................................................................................................................................................................C-------------A----------------------------CTG--TCTTTGAAAAG-----C................................................................................................................................................................17200.05100000010000000000
droSec2
CATACCTCGTCGCGAGAGCCATTCGCATTTCCACCGATAAGGACAATGTGGTAAGTTGC----------GGTC-A---------------GGTCGGC--GAG---TGAGCTCATCGCTCACCTATGCTGGGTGACT--TCT-----TCGTTGTCTCCG----------CTG-ATT------------CCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--TCTTTGAAAAT-----ATTCCAACAACGTA--GAAGGTAAAAA-----------------------------T-----CGGCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCATTACCTCAATGTGGTGGT-------------------GGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.ATACCTCGTCGCGAGAGCCATTCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040220
............................TTCCACCGATAAGGACAATGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
................................ACCGATAAGGACAATGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
CATACCTTGTCGCGAGAGCCATTCGAATTTCCACCGATAAGGACAATGTGGTAAGTTGT----------GGTC-A---------------GGTCGGC--GAG---TGAGCTCATCGCCCACCAATGCTGAGTGACT--TCT-----TCGTTGTCTCCG----------CTG-ATT------------CCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--CCTTTGAAAAT-----ATTCCAACAACGTA--GAAGTTAAAAA-----------------------------T-----CGCCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCATTAACTCAATGTGGTGGT-------------------GGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.ATACCTTGTCGCGAGAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
.ATACCTTGTCGCGAGAGCCATTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
..............................................................................................................................................................................T------------CCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--CCTTTGA..........................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATACCTTGTCGCGAGAGCCATTCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................CACCGATAAGGACAATGTGGT....................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CATACCTTGTCGCGAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATACCTTGTCGCGAGAGCCATTCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGTCGCGAGAGCCATTCGAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TAAGGACAATGTGGTAAGTTG..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................T----------GGTC-A---------------GGTCGGC--GAG---TGAGCTCATC.....................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....CCTTGTCGCGAGAGCCATTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................AAGGACAATGTGGTAAGTTGT----------...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAGAGCCATTCGAATTTCCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................TCCACCGATAAGGACAATGT.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................GTAAGTTGT----------GGTC-A---------------GGTCGGC--GAG---T..............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CTTGTCGCGAGAGCCATTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................CCCACCAATGCTGAGTGACT--TCT-----......................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......TGTCGCGAGAGCCATTCGAATTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGAGAGCCATTCGAATTTCCACCGA...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GAGAGCCATTCGAATTTCC........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................GT----------GGTC-A---------------GGTCGGC--GAG---TGAGC..........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.ATACCTTGTCGCGAGAGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGCGAGAGCCATTCGAATTTCCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CATACCTTGTCGCGAGAGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................GTAAGTTGT----------GGTC-A---------------GGTC..........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................AATGCTGAGTGACT--TCT-----TCGT..................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TGTGGTAAGTTGT----------GGTC-A---------------GG............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................AATGTGGTAAGTTGT----------GAA................................................................................................................................................................................................................................................................................................................................................................................18130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CATCGCCCACCAATC..........................................................................................................................................................................................................................................................................................................................15170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TATACCTCGTGGTGAGAGCCATTCGCATTTCCACCGATAAGGACAATGTGGTAAGTTGT----------GGTC-A---------------TGTCTGC--GGG---TGAGCTCATCGTCCGCTTATGTTGGGTGACT--TCT-----CCGTTGTCTTTT----------CTG-ATT------------CCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--TCTCTGAAAAT-----ATTCGAACAACGTA--AAAAGTCAAAA-----------------------------T-----CGGCGGGCAG------TG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCAATAACTCAATGTGGTGGA-------------------AGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................TTCCACCGATAAGGACAATGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................2313.0030011010
.ATACCTCGTGGTGAGAGCCATT.................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020001010
.ATACCTCGTGGTGAGAGCCATTCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020100100
...........................TTTCCACCGATAAGGACAATGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................2412.0021100000
............................TTCCACCGATAAGGACAAT.........................................................................................................................................................................................................................................................................................................................................................................................................1912.0021100000
.............................................................................................................................................................................................................................................................................AAAAT-----ATTCGAACAACGTA--AAAAGT...........................................................................................................................................2511.0010000100
.................................CCGATAAGGACAATGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
............................TTCCACCGATAAGGACAATGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...................................GATAAGGACAATGTGGTAAGTTGT----------...................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.ATACCTCGTGGTGAGAGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
............................TTCCACCGATAAGGACAATGT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
..............................CCACCGATAAGGACAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.ATACCTCGTGGTGAGAGCCATTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
..............AGAGCCATTCGCATTTCCACCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
droYak3
TATACCTCGTCGTGAGAGCCATTCGCATTTCCACCGATAAGGACAATGTGGTAAGTTG-----------------------------------------------TGAGCTCATCGTCCACTTATGTTGGGTGACT--TCT-----CCGTTGTCTATT----------CTG-ATT------------TCATAAA-----TTTTC---------GAC-------------A----------------------------CTG--TCTTTGAAAA------ATTCCAGCAACGTA--GAAAGCAGAAG-----------------------------T-----CGGCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCATTAACTCAATGTGGTGGT-------------------GGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................TTCCACCGATAAGGACAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................2221.50302100000000
.ATACCTCGTCGTGAGAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
....CCTCGTCGTGAGAGCCATTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.................GCCATTCGCATTTCCACCG....................................................................................................................................................................................................................................................................................................................................................................................................................1921.00200020000000
........GTCGTGAGAGCCATTCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...................CATTCGCATTTCCACCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................2220.50101000000000
....................ATTCGCATTTCCACCGATAAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000000000
............................................................................................................................................................................................................................................................................................................................................................CAG------CG---ACTACGACATGGCTAAACTT..........................................................2520.50110000000000
droEug1
TATACCTTCTGATGAGAGCCACTCGCATTGCTAACGATAAGGATAGTGCGGTAAGTAAT----------GGTC-G--------------GGGTCAGC--GGG---TGAGCTCATCACCCACTTATGCTAGCAGGC-------------TTTGTCTTCT----------GCG-ATT------------TCATAAA-----TTGCC---------GCC-------------A----------------------------CTG--TCTATGAAAATGGAAGAATCGAAGAACGAATGAAAAAAACAAA-----------------------------T-----CGGTGGACAAAAATTCCG---ACTACGACATGGCTAAACTTAGCAC---TTTGTGGCCATAAACTCAATGTGGTGGT-------------------GGTSizeHit CountTotal NormTotal
No Reads
droBia1
TGTACCTTCTCATGAGAGCCACTCGCATTGCCACCGATAAGGATGGTCTGGTAAGTGGT----------GGTG-G--------------GGGTCAGT--GGG---TGAGCTCATCGCCCCCTTATGCTGCCTGGC-------------GTTGTCTTGT----------CCG-ATT------------CCATAAA-----TTTCC---------GCC-------------A----------------------------CTG--TCTGTGAAAAT-----ATTCGAGCAACGCA--GAAA----------------------------------------------------------CG---ACTACGACATGGCTAAACTTAGCAT---TTTGCCGCAATTAACTCAATGTGGTGGT-------------------GGTSizeHit CountTotal NormTotal
No Reads
droTak1
TGTACCTGCTCATGAGGGCCACTCGCATTGCCACCGATAAGGATGGTGTGGTAAGTGGT----------GGTC-GGTAGTCGGTGGTGGGGGTCAGT--GGG---TGAGCTCATCGCCCACTTATGCTGGCTGGC-------------GTTGTCTTCT----------TCG-ATT------------TCATAAA-----TTTCC---------GCC-------------A----------------------------CTG--TCTGTGAAAAT-----ATTCGAGCAACGCA--GAAAGTAAAAT-----------------------------T---------------------CG---ACTACGACATGGCTAAACTTAGCAT---TTTGTCGCAATTAACTCAATGTGGTGGT-------------------GGTSizeHit CountTotal NormTotal
No Reads
droEle1
TTTATCTGCTGATGAGAGCCGCTCGCATTGCCACCGATAAGGATAGTGTGGTAAGTGGT----------GGTC-GT--------ATTCGGGGTCAGT--GGG---TGAGCTCATCGCCCACTTATGCTCGCTGGC-------------GTTGTCTTCT----------CCG-ATT------------CCATTAA-----TTTCC---------GCC-------------A----------------------------CTG--TCTGTGAAAAT-----ATTCCAACAACGCA--GAAAA-------------------------------------------ACGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TCTGTCGCCAATAACTCGGAATGGTGGT-------------------GGTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTACCTGCTGATGCGAGCCACTCGCATTGCCACCGATAAGGATGGTGTGGTAAGTGGT----------GGTC-G--------------GGGTCAGTC-AGG---TGAGCTCATCGCCCACTTATGCTCGCTGGC-------------TTTGTCTTCT----------CCC-ACT------------CCATAAA-----TTTC------------C-------------A----------------------------TTG--TCTGTGAAAAC-----ATTCGAACAACGCA--GAAAGTGAATT-----------------------------TCAGAACCTCGGGCAG------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGTCGCCAATAATTCAGAATGGTGGT-------------------GGTSizeHit CountTotal NormTotal
No Reads
droFic1
TTTACCTCCTCATGAGAGCCACTCGCATTGCCACCGATAAGGATGGTTTGGTAGGTAGC----------AGTG-G--------------GGGTCAGTCGGGGTGGTGAGCTCATCGCCCACTTATGCTCGCTGGC-------------GTTGTCTTCT----------CCGGATT------------CCATAAA-----TTTCC---------GCC-------------A----------------------------CTG--TCTGCTAAAAT-----ATTCGAACAACGCA--GAAAGTGAAAT-----------------------------A-----AATTGGGTGG------TG---ACTACAACATGGCTAAACTTAGCGC---TTTGTCGCCATAAAC--------------------------------GGTSizeHit CountTotal NormTotal
No Reads
droKik1
TCTACCTGCTGGTGCGAGCCACGCGCATTGCCACCGATAAGGATGGTGCGGTAAGTTGT----------CACCTG--------------AGGTCAGC--GGG---TGACCTCATCGC-------------------------------GGTGTCTTCT----------CCG-ATTCCGATTCCGATTCGATTCA-----TATTC---------CAC-------------T---GAT----------------------TTG--TCTGTTAAAAT-----ATTCGAACAACGCA--GAAAGTGAAAT-----------------------------TCATACGGCCGGGCAA------CG---ACTACGACATGGCTAAACTTAGCAC---TTTGCCGCCATTAACTCACCCTAGTAGTGGTGCTGGTTGCTGGTAATGGTSizeHit CountTotal NormTotal
No Reads
droAna3
TCTACCTGCTGATCAGAGCCACTCGCATTGCCGCCGATAAGGATGGTGTGGTAAGTGAC----------AGTC-AA--------GGTGGAGGTCA-T--CGA---TGATTTCATCGTCCACCTATGCTACGGGCC-------------ATTGTCTATTTGGGCGGGCTCTA-GTT------------CTATAAA-----TTCCT---------CTG------------------AA----------------------ATG--TCTGTAAGAAT-----ATTTGTTAGGCGCC--GAAAGTGAAAT-----------------------------T-----CATTGGCCAG------TGAGTACTACGGCATGGCTAAACATAGCAC---CGTGTCTCCATAAACTTACCCTGGTGGT-------------------GGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.CTACCTGCTGATCAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002020000
.CTACCTGCTGATCAGAGCCACT.................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002010010
..............AGAGCCACTCGCATTGCCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...ACCTGCTGATCAGAGCCACTCGCATTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................CCATAAACTTACCCTGGTGGT-------------------GGG2411.001010000
.CTACCTGCTGATCAGAGCCACTCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..........GATCAGAGCCACTCGCATTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.....................CTCGCATTGCCGCCGATAAGGAT............................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......GCTGATCAGAGCCACTCGCATTGCCGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................CACTCGCATTGCCGCCGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.CTACCTGCTGATCAGAGCCACTC................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................T-----ATTTGTTAGGCGCC--GAAAGT...........................................................................................................................................2111.001010000
TCTACCTGCTGATCAGAGCCACTCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.....CTGCTGATCAGAGCCACTCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................................CGATAAGGATGGTGTGGA....................................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
droBip1
TCTACCTGCTGATCAGAGCCACTCGCATTGCCGCCGATAAGGATGGTGTGGTAAGTGAC----------AGTC-AA--------GGTGGAGGTCA-T--CGA---TGATTTCATCGTCCACTTATGCTACG-GGT-------------ATTGTCTATT----------CTG-AA-----------------------------------------A-------------G----------------------------AAG--TCTGAAAGAAT-----ATTCGTAAGAAGCC--GTAAGTGAAAT-----------------------------T-----CATTGGCCAGCAG---TGAGTACTACGACATGGCTAAACATAGCAC---CTTGGCTCCATAAACTTAGCCTGGTGGT-------------------GGTSizeHit CountTotal NormTotal
No Reads
dp5
TCTACCTCTCGATGCGAGCCACGCGCATTGCCACCGATAAGGATAGTGAGGTAAGATTCCTAAGGGGAAATTT-AA--------GG-------------GGGAGATGACTTCATCGGACACTTATGCTG----AC-------------ATTATCAATT----------CCG-GCA------------TTATACA-----TGTTG---------GACAGCGAGTAAGCCCAAGAGAGCTATGGGCACGGTGTTGCGGTGTTGGCTCTCCAAAAATACAATAATTCGACAACGCA--GAAAGAGAAAT-----------------------------T-----CCTTCAGCAG------CG---ACTACGACACGACTAAACATAGC-------TGTGGCCTA-------------TAGT-------------------GGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.CTACCTCTCGATGCGAGCCACGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040210100000
....................................................................................................................................................................................................................................CAAGAGAGCTATGGGCACGGT...............................................................................................................................................................................................2111.0010100000000
..TACCTCTCGATGCGAGCCACGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................CTTCATCGGACACTTATGCTG----...................................................................................................................................................................................................................................................................................................................2111.0010100000000
...ACCTCTCGATGCGAGCCACGCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
......................GCGCATTGCCACCGATAAGGAT............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...............GAGCCACGCGCATTGCCACCGATAAGGAT............................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
...............................CACCGATAAGGATAGTGAG......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................A------------TTATACA-----TGTTG---------GACAGC.............................................................................................................................................................................................................................1911.0010000100000
.CTACCTCTCGATGCGAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
..............................................TGAGGTAAGATTCCTAAGGG......................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................AGCCACGCGCATTGCCACCGATAAGGATA...........................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
............................TGCCACCGATAAGGATAGTGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............GAGCCACGCGCATTGCCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................ACCGATAAGGATAGTGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................CGATAAGGATAGTGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................1820.5010100000000
...................................GATAAGGATAGTGAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
droPer2
TCTACCTCTCGATGCGAGCCACGCGCATTGTCACTGATAAGGATAGTGAGGTAAGATTCCTAAGGGGAAATTT-AA--------GG-------------GGGAGATGACTTCATCGGACACTTATGCTG----AC-------------ATTATCAATT----------CCG-ACA------------TTATACA-----TGTTG---------GACAGCTAGTAAGCCCAAGAGAGCTATGGGCACGGTGTTGTGGTGTTGGCTCTCCAAAAATACAATAATTCGACAACGCA--GAAAGAGAAAT-----------------------------T-----CCTTCAGCAG------CG---ACTACGAAACGACTAAACATAGC-------TGTGGCCTA-------------TAGT-------------------GGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................CGCATTGTCACTGATAAG...............................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
.....................................................................................................................................................................................................................................AAGAGAGCTATGGGCACGGTG..............................................................................................................................................................................................2111.001000001
...................CACGCGCATTGTCACTGATAAGGAT............................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
....................ACGCGCATTGTCACTGATA.................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...........................................................................................................................................................................................................................................GCTATGGGCACGGTGTTGTG.........................................................................................................................................................................................2011.001000001
.CTACCTCTCGATGCGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droWil2
TCTATTTACTAATACGAGCTGTTCGCATTGCCACCGATAAGGATGGAACGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....TTACTAATACGAGCTGTTCGCATTGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
..........................ATTGCCACCGATAAGGATGGA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
........................GCATTGCCACCGATAAGGAT............................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..........AATACGAGCTGTTCGCATT...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
........................GCATTGCCACCGATAAGGATGGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.......................CGCATTGCCACCGATAAGGAT............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..................................CGATAAGGATGGAACGGA....................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
.......................CGCATTGCCACCGATAAGGATGG..........................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
..........................ATTGCCACCGATAAGGATGGAACGGA....................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
........CTAATACGAGCTGTTCGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................................GATAAGGATGGAACGGAT...................................................................................................................................................................................................................................................................................................................................................................................................1840.50200110
droVir3
TCGTTTTGCTGGTGCGCGGCGTGCAAATAGAGCATGATAAGGATGGTTCGGTGAGTGTT----------TGAC-T-----------------AAAAC--GGG---TGACATCATTATCT-------------GGCATTGCCTCATGTAATTGTTTCATAAACTG-----GC-GTG------------TCACACAGCTAAGCTCCGCCCACCCGAAAAGCAACTAAGATCAA-TGAG----------------------CTG--TTTCCAAAAAT-----ATGTAGACAACTAA--C---------TCGAGACGCTCAGGTGTGTGTAAGCGATATT-----AAATTGCCGC------CG---ACTACGACATGTCTAAACTTAGCCCCCGTGTGTGCACATGTACCCAACGCCAAGGA-------------------GCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.CGTTTTGCTGGTGCGCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003003000000000000000000000000000000000000000000000000000000000000
....................GTGCAAATAGAGCATGATAAGGATGGT.........................................................................................................................................................................................................................................................................................................................................................................................................2712.002000100000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................CTACGACATGTCTAAACTTAGC.......................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.........................AATAGAGCATGATAAGGATGGT.........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
..........................ATAGAGCATGATAAGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
........................AAATAGAGCATGATAAGGATGGTT........................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
....TTTGCTGGTGCGCGGCGTGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................GCAAATAGAGCATGATAAGGATGGTTC.......................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
........................AAATAGAGCATGATAAGGATGGTTCG......................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................GACAACTAA--C---------TCGAGACGCTCAGGT........................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................AAACTTAGCCCCCGTGTGTGCACAT.......................................2511.001000000000000000100000000000000000000000000000000000000000000000
..GTTTTGCTGGTGCGCGGCGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
......................GCAAATAGAGCATGATAAGGATGGT.........................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................ATGATAAGGATGGTTCGGAC...................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000000000000000000000000000000000000001000
droMoj3
GCTATCTGCTGGCACGAGCTGTGCAAATTTCCCAAGATAAGGACGGTTCGGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
GCTATCTGCTGGCACGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..TATCTGCTGGCACGAGCTGTGCAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................TGTGCAAATTTCCCAAGATAAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droGri2
TCGGCTTAATAGTGCGCGCTGTACGCATTGGCCTAGATAAGGATGGTTCGGTGAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:30 AM