ID:

dsi_6461

 Coordinate:

2r:5290260-5290409 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.1 -39.0 -39.0

Flybase annnotation

CDS [2r_5290410_5290665_+]; exon [2r_5290410_5290791_+]; intron [2r_5289930_5290409_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGCGGCTTAGGAATTTCGCAGGCGGCGGTTGGCATTTAATTCAGCGTAATGCGCGCATAATTGTGCGAATCAATTGCCAATTGCCAATGGCCAATATGCAATAGCCATGTCTGCCAAGACGCTGGGTTCAAGCAACTGATTAGCTAACAGGCGATGGTACACGGCTTTCGATCTAACCGATTTCACTTTCGATCCGCAGCGAGCACCACACCATCCACGTACCCTACAAGGTGCACACGGTGCACCACC
**************************************************..((((((....)))))).......(((((.(((((..((((.(((.(((.....((((((((....))))).)))......)))....))).))))...))))))))))..(((...((((.................)))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR902009
testis
 M023
head
.............................................................................................................................................................GTACACGGCTTTCGATCTAACCG...................................................................... 23 0 1 1.00 1 1 0 0
..........GGAATTTCGGACGCGGCGGTT........................................................................................................................................................................................................................... 21 2 2 0.50 1 0 1 0
..........GGAATTTCGGACGCGGCGTTT........................................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0
..................GCAGTCGGAGGTTGGGATT..................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1

Anti-sense strand reads

AGCGCCGAATCCTTAAAGCGTCCGCCGCCAACCGTAAATTAAGTCGCATTACGCGCGTATTAACACGCTTAGTTAACGGTTAACGGTTACCGGTTATACGTTATCGGTACAGACGGTTCTGCGACCCAAGTTCGTTGACTAATCGATTGTCCGCTACCATGTGCCGAAAGCTAGATTGGCTAAAGTGAAAGCTAGGCGTCGCTCGTGGTGTGGTAGGTGCATGGGATGTTCCACGTGTGCCACGTGGTGG
**************************************************..((((((....)))))).......(((((.(((((..((((.(((.(((.....((((((((....))))).)))......)))....))).))))...))))))))))..(((...((((.................)))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body
..............................................................................................................................................................................ATTGGCCAAAGGGAAAGC.......................................................... 18 2 9 0.78 7 1 6 0 0 0 0
.............................................................................................................................CCAAGTTCGGTGACTA............................................................................................................. 16 1 3 0.33 1 0 0 1 0 0 0
...........................................................TTAACACGCTTAGTTG............................................................................................................................................................................... 16 1 6 0.17 1 1 0 0 0 0 0
..........................................................................................................................................................................................................TTGTGGTGTAGTAGGTGC.............................. 18 2 9 0.11 1 0 0 0 0 1 0
............................................................TAACACGCTTAGTTGACA............................................................................................................................................................................ 18 2 10 0.10 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................GGGATGTTTCACATGTGAC......... 19 3 13 0.08 1 1 0 0 0 0 0
..............................................................................................................................................TCGATTGGCCGCTAC............................................................................................. 15 1 13 0.08 1 1 0 0 0 0 0
..............................................................................................................................................................ATGTGCCGGGAGCTAG............................................................................ 16 2 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................................................CTAGGGGCATGGGAT....................... 15 2 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................................................................................................CGCTCGGGATGTCGTAGGT................................ 19 3 20 0.05 1 0 0 0 1 0 0
................................CGGAAACCAAGTCGCATT........................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 1
....................................................................................................................TCCTGTGACCCAGGTTCGT................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................................................................................AGTGAAAGCTAGCCG.................................................... 15 1 20 0.05 1 1 0 0 0 0 0
...................................................................................CGGTTGCCGGCTATAC....................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0

Generated: 04/23/2015 at 12:05 PM