ID:

dsi_6451

 Coordinate:

x:18430992-18431141 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.9 -26.4 -26.3

Flybase annnotation

five_prime_UTR [x_18430861_18430991_+]; exon [x_18430861_18430991_+]; intron [x_18430992_18431400_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCAGTCGACAATCGTCTCATTTAGCTGGAAATTCTGAATCAAAGCGGAGGTATGTGTTTGCTTGTTTGATTTTCAGCTGCGCTCGGACAATTTATCAATTAAAATAGTGAATGGGAATAGTGAATAGTGGCTTTCAAGCACCCGCAGCAGAGGTCTATTTGCCCTGTGCACCGTTCCTTGCCTGTGGACGACCTTGCACTTTTTCCCGTTTCTTCACCAAATCCTGCTGATTTGGTGAATCAAAGCGAT
************************************************************************......((((.(((..((.......................((((((.(((.((((.(((.....((.(((.........)))))....))))))).))).))))))......))..)))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.....................................AATCAAAGCGGAGGTATG................................................................................................................................................................................................... 18 0 1 6.00 6 2 0 4 0 0 0 0 0 0 0 0 0
...............................ATTCTGAATCAAAGCGGA......................................................................................................................................................................................................... 18 0 1 6.00 6 5 0 0 0 1 0 0 0 0 0 0 0
.......................AGCTGGAAATTCTGAATCAAA.............................................................................................................................................................................................................. 21 0 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0 0
.......................AGCTGGAAATTCTGAATCAAAGCGGAG........................................................................................................................................................................................................ 27 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0
......................................ATCAAAGCGGAGGTATGTGTT............................................................................................................................................................................................... 21 0 1 3.00 3 0 0 2 0 0 1 0 0 0 0 0 0
..............................AATTCTGAATCAAAGCGGA......................................................................................................................................................................................................... 19 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0
.....................................AATCAAAGCGGAGGTATGTG................................................................................................................................................................................................. 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
......................TAGCTGGAAATTCTGAATCAAAGCGG.......................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTTGCCTGTGGACGACCTTGCAC.................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...................................TGAATCAAAGCGGAGTTATGTGTTT.............................................................................................................................................................................................. 25 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................AGCTGGAAATTCTGAATCAAAGCGGA......................................................................................................................................................................................................... 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.................TCATTTAGCTGGAAATTCTGAA................................................................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
......................................ATCAAAGCGGAGGTATGTGTTTG............................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................TTCAGCTGCGCTCGGACAATT............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................ATTCTGAATCAAAGCGGAGG....................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................CTCATTTAGCTGGAAATTCTGAA................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................AGCTGGAAATTCTGAATC................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATAGTGAATGGGAATAGTGAAT............................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................TGAATCAAAGCGGAGGTATGTGG................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................TAGCTGGAAATTCTGAAT.................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................TTCTGAATCAAAGCGGAGG....................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TTGCTTGTTTGATTTTCAGCT........................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................AGCTGCGCTCGGACAATTTAT.......................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................TTTAGCTGGAAATTCTGAATCAAAG............................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................TAGCTGGAAATTCTGAATCAAAG............................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................GCTGGAAATTCTGAATCAAAGCGGA......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................ATTCTGAATCAAAGCGGAGA....................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.GCAGTCGACAATCGTCTCATTTAGCTG.............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................TCTGAATCAAAGCGGAGG....................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................ATTTAGCTGGAAATTCTGAATC................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................GAATCAAAGCGGAGGTATGTG................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCCTTGCCTGTGGACGACCT....................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................AGCTGGAAATTCTGAATCAAAGCG........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...AGTCGACAATCGTCTCATTTAGCTGGG............................................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......CGACAATCGTCTCATTTAGCTGGAA........................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................GTTTGATTTTCAGCTGCGCTCGG................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................TCTGAATCAAAGCGGAGA....................................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................GGAAATTCTGAATCAAAGCGGAA........................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................TGAATCAAAGCGGAGGTA..................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGCACCGTTCTTTGCCTGTGGA............................................................. 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................CTCATTTAGCTGGAAATTCTGA.................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................ATTTAGCTGGAAATTCTGAA................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................TCTGAATCAAAGCGGAGGTATGTGTT............................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TGCGCTCGGACAATTTATCAATTAAAA................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................AAACCCTGCTGATTTGCTGG........... 20 3 7 0.86 6 0 0 0 0 0 0 0 0 6 0 0 0
.......................................................................................................AATAGTGAATGTGAATAGG................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0
..................CATTTAGCCGGAAATTGGGAAT.................................................................................................................................................................................................................. 22 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
..........AGTCGTATCATTTAGCCGGA............................................................................................................................................................................................................................ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
....................TTGATCTGGAGATTCTGAAT.................................................................................................................................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................TGCTGATTTGAGGAATC........ 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................GAAAAGTGGCTTTCAAGCTT............................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................GTACCCTGCCTGTGGA............................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................GCACCAGTGGTCTATT.......................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................GCACCAGTGGTCTAGTTG........................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CCGTCAGCTGTTAGCAGAGTAAATCGACCTTTAAGACTTAGTTTCGCCTCCATACACAAACGAACAAACTAAAAGTCGACGCGAGCCTGTTAAATAGTTAATTTTATCACTTACCCTTATCACTTATCACCGAAAGTTCGTGGGCGTCGTCTCCAGATAAACGGGACACGTGGCAAGGAACGGACACCTGCTGGAACGTGAAAAAGGGCAAAGAAGTGGTTTAGGACGACTAAACCACTTAGTTTCGCTA
**************************************************......((((.(((..((.......................((((((.(((.((((.(((.....((.(((.........)))))....))))))).))).))))))......))..)))...)))).************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
......................................................................................................................................................................CACGTGGCAACGATCGGAC................................................................. 19 2 1 12.00 12 3 4 1 1 0 1 1 1 0 0
.....................................................................................................................................................................TCACGTGGCAACGATCGGAC................................................................. 20 3 3 5.00 15 4 6 4 0 0 0 0 0 1 0
......................................................................................................................................................................CACGTGGCAACGATCGGA.................................................................. 18 2 1 3.00 3 2 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................CACGTGGCAACGATCGGACG................................................................ 20 3 2 1.50 3 0 0 0 1 2 0 0 0 0 0
........................................................................................................................................................................CGTGGCAAGGATCGGAC................................................................. 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................TCACGTGGCAACGATCGGA.................................................................. 19 3 9 1.00 9 7 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................ACGTGGCAACGATCGGAC................................................................. 18 2 13 0.38 5 1 1 1 0 1 0 0 0 1 0
.....................................................................................................................................................................CCACGTGGCAACGATCGGAC................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ACGGACCCCTGCTGGAT...................................................... 17 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................CCACGTGGCAACGATCGGA.................................................................. 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GCAAGGAACCGACAC............................................................... 15 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0
.CGTCCGCTGTTAGAAGAG....................................................................................................................................................................................................................................... 18 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CGTGGCAACGATCGGAC................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................AAAAAATGGCAAAGAAGT................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................CAAAGAAGTCGTTCAGGTC....................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................ACGTGGCAACGATCGGACG................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:18430942-18431191 + dsi_6451 GGCAGTCGACAAT----------CGTCTCATTTAGCTGGAAATTCTGAATCAAAGCGGAGGTATG-------TGT--TTGCTTGTTTGATTTTC--AGCTGCGCTCGGACAATTTATCAATTAAAATAGTGAATGGGAATA-GTGAATAG-TGGCTTT----------------CAAGCACCCGCAGCAGAGGTCTATTT----------------------GCCC-TGTGCACCGTTCCTTGCCTGTGGACGACCTTGCACTTTTTCCCGTT--------TCTTCACCAAATCCTGCTGAT--------------------------TTGG--TGA--ATCAAAGCGAT
droSec2 scaffold_8:1817729-1817973 + GGCAGTCGACAAC----------CGTTTCATTTGGCTGGAAATTCTGAATCAAAGCGGAGGTATG-------TGT--TTGATTGTTTGATTTTC--AGCTGCGCGCGGACAATTTTTCAAGTAAAATAGT----G--AATGGGCGAAGAG-TGGCTTT----------------CAAGCACCCGCAGCAGATGTCTATTT----------------------GCCC-TGTGCACCGTTCTTTGCCTGTGGACGACCTTGCACTTTTTCCCGTT--------TCTTCACCAAATCCTGCTGAT--------------------------TTGG--TGA--ATCAAAGCGAT
dm3 chrX:19537446-19537682 + GGCAGTCGACGATTG--------TATCTCATTTAGTTGGAAATTCTGAATTAAAGCGGAGGTATG-------TGTGTTTGCTTATTTGATTTTC--AGCTGCGCTCGCACAGTTTTTCAATTAAAATGGTT--TG--AATG------------GCTAT----------------CAAGCACACGCAGCAGAGGTTTATTT----------------------GCCC-TGCGCGCCGTTCTTTGCCTGTGG---ACCTTGCACTTTTTCCCGTT--------TCTTTACCAAATCCTGCTGAT--------------------------TTGG--TGA--ATCGAAGCGAT
droEre2 scaffold_4690:9765580-9765817 + GGCACTAGACGATTG--------CAGCTCATTTCTGTACAACTTTTGGAGTAAAACGGAGGTGTG-------TGTGCTTGTTTTT--------C--AGCTGTGTTCGTACGATTTGTCAATTAAAATAGCAAGTG--AATGGGCGGAGAG-TCGCTTC----------------CAAACTTCC---GCTGGTCGTTTTTT----------------------GACC-TGTTCGCCCTTCCTTGCTTCTAG---AACTTGCATTTTCTCG-CTT--------TCCCCACAAAATATCGCCGAT--------------------------TTGG--GGA--ATCTGAGCCAT
droYak3 X:11800364-11800600 - GGCACTAGACGATTG--------CAGCTCACTTGAGTAGAAATTTTGGACTAAAGCGGAGGTGTG-------TGTACTTGTTTT---------C--AGATGCGCTCGCATAGTTTGTCAATTAAAATAGCCAGTG--AATGGGCGGAGAG-TCGCTTC----------------CAACCATCC---GCTGGCGATTATCT----------------------GCCC-TTTTCACCGTTCCTTGCTTCCGG---ACCTAGCTCTTTTTCG-GTT--------TCGCCATAAAATCCTGCTGAT--------------------------TTGG--GAA--ATCGGAGCCAT
droEug1 scf7180000409230:796501-796764 - GGCATAAACCGATTG--------CAACTCACTTAAGTGGAAATTTTTGATCGAAACGGAGGTGCG-------TGTGCCTGACTTTTTAGCTCCTAAACCTTGTCGTGTGTAATTTTTTA-TAAAATTACCACGTA--AATAAACAAAAACCTCAATTT----------------CAAACATCA---ACATTGGCTATCCAATCCAGTG-----------------T-TATCCAGTGCTTTTTGTTATTCTGAAGCTTTGCATGTTTTGC---TAACGTTGCTCTTCGCAAAATATAATTAAT--------------------------TCGAGGCAA--ATAAAAACTTT
droBia1 scf7180000302069:1065416-1065619 - GGCATTAGGGTACTCGATTTCACTATTCCACTTGATTGGAAATTTTCGTTTGAAGCGGAGGTGCGT--TGTGTGAGCTGGTTTCC--------C--AGC----------CTATTTGTCAATTAAA------------------CAAAGCGCTCGGTTC----------------CGAAATACA---GCAGAGGTTCAATGTTCCAGGGCGA--------------------------------------------CTTGTGTTTTTTCG-GCC--------CGGCCACCAAAAACC---GAA--------------------------TTA---CGC--TTCGAGGCAAT
droTak1 scf7180000415872:1002246-1002470 + GGCATTATATTA--------------TTCACTTGATTGGAAATTTTCAATTGAACCGGAGGTGTGTAGTGTGTGTGCTTGTTTTC--------C--AGCTGCTCGGCGGCGATTCATCAATTAAAGTAGCCAGTG--AATAAACAAAGGG------------------------------CCC---GCAGAGGTTTCATATTCCTGGGTGATTTGCCCCATC------------TGTT--------TT---TGGCCT------TCTGCATAAT--------TCTTCACCTAATCCC---AATTCGGGTTTATT------------------A--TAG--ATTAAAG----
droEle1 scf7180000490751:1223602-1223837 + GGCAGCAAACGATTC--------TAGCTCATTTAAGTGGAAATTTTCGATCAAAGCGGAGGTGTG-------TGTGTTTTTTTTT--CAGCTCT--TACTGCTCAAGTGTAATTTGTCAATTAAAATACCAAGTG--AATGAACAAAGACCTCAAGTC----------------CAACAACCA---GCAGAGGTTTAATTTCCTTCTGCTAATTG------------------TAGAT-------TTT---CGGCTTTGCACTTTGTAC-ATTTCCA-----------------CTGCTCTT---------TT---------------ATAG--TTT--ATCTGGGCAGT
droRho1 scf7180000777033:60869-61118 + GGCAGCAGACGATAC--------TAGCTCATTTAAGTAGAAATTTTCGATTAAAGCAGAGGTGCG-------TGTGATTCTCTTC--TAGCTTT--AATTGCTCCAGTGTAATTTGTCAATTAAAATATCAAGTG--AATAAACAAAGGCCTCATTTC----------------CGAAGACCA---GCACAGGTTTATTTTCCTTGTGCGATTTG------------------CGGTT-------TTT---CGGCCTGACACTTTTTTTTATTTATATAGCTTTTCATATAATA----TAAT--------------------------TTGG--GGATGTTCAAGACTTT
droFic1 scf7180000454073:1822689-1822918 + GGCAGTAAACGAACT--------CAGCTCACTTATTTGGAAATTTTCGATTGAACCGGAGGTGCG-------TGTGCTTGTTTTTT-CAATCTT--AACTGTTCTAACATTATTTGTCAATTAAAATAGTCAGTG--AACAAAAGCATAG-AACAATT----------------CAAACTTCC---GAATAAGTTTATTT----------------------TCCCATCTTCGTGGTTTTC------CGC---ACCTTGCAGTTTTTCA-ATT------------CACTA------GGTGTT--------------------------TACA--TAA--AATAATGCATT
droKik1 scf7180000302592:1619519-1619800 - GGCAGCAAACGAAAG--------CAGCTCACTTACGTTACAATTTTCGATCAACCCGGAGGTGTG-------TGTGCTTGCTTTGC--GAACCT--TGTGTTTTGGGGACAATTTGTCAATTAAA-CAGTAAAGATTTATAAACAAAGAG-TGCCTTTCCAGTGGTATTTCCGCGACAAAAGC---GTAGGGCCTTTCTTTTTCGGTGTGTTTTTCCAAATC------GGGGGACCTTCA-ACTTTCCAA-----TATGT--TTTTCTTCGTG--------CCTTTGCCAGAACTAAT--------------CGTACATTTAAGTGATTCGTGG--------CGAATATT
droAna3 scaffold_13417:1181473-1181542 + GGCAGTCAAGGAAAG--------TGTTTCATTCGAGTGGAAATTTTCAATTGAAGCAGAGGTGTG-------TCTCGTTTTCTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCAGTCGACAAT----------CGTCTCATTTAGCTGGAAATTCTGAATCAAAGCGGAGGTATG-------TGT--TTGCTTGTTTGATTTTC--AGCTGCGCTCGGACAATTTATCAATTAAAATAGTGAATGGGAATA-GTGAATAG-TGGCTTT----------------CAAGCACCCGCAGCAGAGGTCTATTT----------------------GCCC-TGTGCACCGTTCCTTGCCTGTGGACGACCTTGCACTTTTTCCCGTT--------TCTTCACCAAATCCTGCTGAT--------------------------TTGG--TGA--ATCAAAGCGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................AATCAAAGCGGAGGTATG-------......................................................................................................................................................................................................................................................................................1816.00620000000004000000
.........................................ATTCTGAATCAAAGCGGA...................................................................................................................................................................................................................................................................................................1816.00651000000000000000
.................................AGCTGGAAATTCTGAATCAAA........................................................................................................................................................................................................................................................................................................2115.00520300000000000000
.................................AGCTGGAAATTCTGAATCAAAGCGGAG..................................................................................................................................................................................................................................................................................................2713.00300000000000030000
................................................ATCAAAGCGGAGGTATG-------TGT--T................................................................................................................................................................................................................................................................................2113.00300010000002000000
........................................AATTCTGAATCAAAGCGGA...................................................................................................................................................................................................................................................................................................1912.00201100000000000000
...............................................AATCAAAGCGGAGGTATG-------TG....................................................................................................................................................................................................................................................................................2012.00200000000002000000
................................TAGCTGGAAATTCTGAATCAAAGCGG....................................................................................................................................................................................................................................................................................................2612.00200000000000020000
...............................................................................................................................................................................................................................................CTTGCCTGTGGACGACCTTGCAC........................................................................................2312.00200200000000000000
.................................AGCTGGAAATTCTGAATCAAAGCGGA...................................................................................................................................................................................................................................................................................................2612.00200000000000020000
...........................TCATTTAGCTGGAAATTCTGAA.............................................................................................................................................................................................................................................................................................................2212.00200200000000000000
................................................ATCAAAGCGGAGGTATG-------TGT--TTG..............................................................................................................................................................................................................................................................................2311.00100000000000010000
...........................................................................................TTC--AGCTGCGCTCGGACAATT............................................................................................................................................................................................................................................2111.00100000000000001000
.........................................ATTCTGAATCAAAGCGGAGG.................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..........................CTCATTTAGCTGGAAATTCTGAA.............................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.................................AGCTGGAAATTCTGAATC...........................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.............................................................................................................................ATAGTGAATGGGAATA-GTGAAT..........................................................................................................................................................................................................2211.00100000010000000000
.............................................TGAATCAAAGCGGAGGTATG-------TGG--.................................................................................................................................................................................................................................................................................2311.00101000000000000000
................................TAGCTGGAAATTCTGAAT............................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..........................................TTCTGAATCAAAGCGGAGG.................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.............................................................................TTGCTTGTTTGATTTTC--AGCT..........................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................AGCTGCGCTCGGACAATTTAT.........................................................................................................................................................................................................................................2111.00100100000000000000
..............................TTTAGCTGGAAATTCTGAATCAAAG.......................................................................................................................................................................................................................................................................................................2511.00100100000000000000
................................TAGCTGGAAATTCTGAATCAAAG.......................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..................................GCTGGAAATTCTGAATCAAAGCGGA...................................................................................................................................................................................................................................................................................................2511.00100000000000001000
.........................................ATTCTGAATCAAAGCGGAGA.................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.GCAGTCGACAAT----------CGTCTCATTTAGCTG........................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
...........................................TCTGAATCAAAGCGGAGG.................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.............................ATTTAGCTGGAAATTCTGAATC...........................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..............................................GAATCAAAGCGGAGGTATG-------TG....................................................................................................................................................................................................................................................................................2111.00100000000001000000
.............................................................................................................................................................................................................................................TCCTTGCCTGTGGACGACCT.............................................................................................2011.00110000000000000000
.................................AGCTGGAAATTCTGAATCAAAGCG.....................................................................................................................................................................................................................................................................................................2411.00101000000000000000
...AGTCGACAAT----------CGTCTCATTTAGCTGGG......................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
......CGACAAT----------CGTCTCATTTAGCTGGAA.....................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
...................................................................................GTTTGATTTTC--AGCTGCGCTCGG..................................................................................................................................................................................................................................................2311.00100010000000000000
...........................................TCTGAATCAAAGCGGAGA.................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.....................................GGAAATTCTGAATCAAAGCGGAA..................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.............................................TGAATCAAAGCGGAGGTA...............................................................................................................................................................................................................................................................................................1811.00100000000001000000
..........................CTCATTTAGCTGGAAATTCTGA..............................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.............................ATTTAGCTGGAAATTCTGAA.............................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...........................................TCTGAATCAAAGCGGAGGTATG-------TGT--T................................................................................................................................................................................................................................................................................2611.00100100000000000000
...................................................................................................TGCGCTCGGACAATTTATCAATTAAAA................................................................................................................................................................................................................................2711.00100000001000000000
droSec2
GGCAGTCGACAAC----------CGTTTCATTTGGCTGGAAATTCTGAATCAAAGCGGAGGTATG-------TGT--TTGATTGTTTGATTTTC--AGCTGCGCGCGGACAATTTTTCAAGTAAAATAGT----G--AATGGGCGAAGAG-TGGCTTT----------------CAAGCACCCGCAGCAGATGTCTATTT----------------------GCCC-TGTGCACCGTTCTTTGCCTGTGGACGACCTTGCACTTTTTCCCGTT--------TCTTCACCAAATCCTGCTGAT--------------------------TTGG--TGA--ATCAAAGCGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........CAAC----------CGTTTCATTTGGCTGGAA.....................................................................................................................................................................................................................................................................................................................2212.0020020
................................................ATCAAAGCGGAGGTATG-------TG....................................................................................................................................................................................................................................................................................1912.0020020
..............................................................................TGATTGTTTGATTTTC--AGCTGCGC......................................................................................................................................................................................................................................................2412.0020020
.........................................ATTCTGAATCAAAGCGGA...................................................................................................................................................................................................................................................................................................1812.0021010
...............................................AATCAAAGCGGAGGTATG-------......................................................................................................................................................................................................................................................................................1812.0021010
...............................TTGGCTGGAAATTCTGAATCAAAGCGGA...................................................................................................................................................................................................................................................................................................2811.0010100
..........................................TTCTGAATCAAAGCGGAGA.................................................................................................................................................................................................................................................................................................1911.0010010
..............................................GAATCAAAGCGGAGGTATG-------......................................................................................................................................................................................................................................................................................1911.0010001
................................................ATCAAAGCGGAGGTATG-------T.....................................................................................................................................................................................................................................................................................1811.0010010
.............................................TGAATCAAAGCGGAGGTATG-------TGT--TT...............................................................................................................................................................................................................................................................................2511.0010100
......................................GAAATTCTGAATCAAAGCGGAGA.................................................................................................................................................................................................................................................................................................2311.0010010
.................................................TCAAAGCGGAGGTATG-------TG....................................................................................................................................................................................................................................................................................1811.0010010
................................................ATCAAAGCGGAGGTATG-------TGT--T................................................................................................................................................................................................................................................................................2111.0010010
........................................AATTCTGAATCAAAGCGG....................................................................................................................................................................................................................................................................................................1811.0010010
...........................................TCTGAATCAAAGCGGAGGTATG-------TG....................................................................................................................................................................................................................................................................................2411.0010001
...........AC----------CGTTTCATTTGGCTGGA......................................................................................................................................................................................................................................................................................................................1911.0011000
........................GTTTCATTTGGCTGGAAAT...................................................................................................................................................................................................................................................................................................................1911.0010010
.........CAAC----------CGTTTCATTTGGCTGGA......................................................................................................................................................................................................................................................................................................................2111.0010010
.............................ATTTGGCTGGAAATTCTG...............................................................................................................................................................................................................................................................................................................1811.0010010
...........AC----------CGTTTCATTTGGCTGG.......................................................................................................................................................................................................................................................................................................................1811.0011000
...........................................TCTGAATCAAAGCGGAGA.................................................................................................................................................................................................................................................................................................1811.0010010
...............................................AATCAAAGCGGAGGTATG-------T.....................................................................................................................................................................................................................................................................................1911.0010010
........................................AATTCTGAATCAAAGCGGAGGTATG-------TG....................................................................................................................................................................................................................................................................................2711.0010001
..........................................................AGGTATG-------TGT--TTGATTGTTTGAT....................................................................................................................................................................................................................................................................2311.0010001
..........AAC----------CGTTTCATTTGGCTGGAAATTCT................................................................................................................................................................................................................................................................................................................2611.0010100
....................................TGGAAATTCTGAATCAAAGCGGAGGTA...............................................................................................................................................................................................................................................................................................2711.0011000
dm3
GGCAGTCGACGATTG--------TATCTCATTTAGTTGGAAATTCTGAATTAAAGCGGAGGTATG-------TGTGTTTGCTTATTTGATTTTC--AGCTGCGCTCGCACAGTTTTTCAATTAAAATGGTT--TG--AATG------------GCTAT----------------CAAGCACACGCAGCAGAGGTTTATTT----------------------GCCC-TGCGCGCCGTTCTTTGCCTGTGG---ACCTTGCACTTTTTCCCGTT--------TCTTTACCAAATCCTGCTGAT--------------------------TTGG--TGA--ATCGAAGCGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.......................................AAATTCTGAATTAAAGCGGA...................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................TTCTGAATTAAAGCGGAGG.................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
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.................................................................................................................................................................................................................................C-TGCGCGCCGTTCTTTGCCTGTGG---ACCT.............................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
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...................................TTGGAAATTCTGAATTAAAGCGGA...................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................GCTTATTTGATTTTC--AGCTGCGCTCGC..................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................T--TG--AATG------------GCTAT----------------CAAGCACACGCAGCAGA...............................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................TCTGAATTAAAGCGGAGGTAT..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ATTG--------TATCTCATTTAGTTGGAAATT..................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AATTCTGAATTAAAGCGGAG..................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................ATTCTGAATTAAAGCGGAGGTATG-------TG....................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................TCTGAATTAAAGCGGAGGTATG-------TGTG..................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
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....................................................................................TTTGATTTTC--AGCTGCGCTCG...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
................................................ATTAAAGCGGAGGTATG-------TG....................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
........ACGATTG--------TATCTCATTTAGG..........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTAGTTGGAAATTCTGAATTAAAGCGG....................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GTTGGAAATTCTGAATTAAAGCGG....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............TG--------TATCTCATTTAGTTGG.......................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................TCTGAATTAAAGCGGAGGTA...............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................CTGAATTAAAGCGGAGGTATC-------......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGTTGGAAATTCTGAATTAAAG.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
GGCAGTCGACGATTG--------TATCT..................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGCTGAT--------------------------TTGG--TGA--ATCGAAG....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
......CGACGATTG--------TATCTCATTTAGTT.........................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CCTGCTGAT--------------------------TTGG--TGA--ATCGAAGCG..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GGAAATTCTGAATTAAAGCGG....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGGAAATTCTGAATTAAAGCGGAGAA................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................CACAGTTTTTCAATTAAAATGG.............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGTTGGAAATTCTGAATTAAAGCGG....................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TGAATTAAAGCGGAGGTATG-------T.....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................TCTCATTTAGTTGGAAATTCTGA..............................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TCATTTAGTTGGAAATTCTGA..............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCGACGATTG--------TATCTCATTTAGTT.........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............G--------TATCTCATTTAGTTGGAAATTCTG...............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATTTAGTTGGAAATTCTG...............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................AGCGGAGGTATG-------TGTGTTTGC.............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................AGTTGGAAATTCTGAATTAAA........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CTCATTTAGTTGGAAATT..................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
droEre2
GGCACTAGACGATTG--------CAGCTCATTTCTGTACAACTTTTGGAGTAAAACGGAGGTGTG-------TGTGCTTGTTTTT--------C--AGCTGTGTTCGTACGATTTGTCAATTAAAATAGCAAGTG--AATGGGCGGAGAG-TCGCTTC----------------CAAACTTCC---GCTGGTCGTTTTTT----------------------GACC-TGTTCGCCCTTCCTTGCTTCTAG---AACTTGCATTTTCTCG-CTT--------TCCCCACAAAATATCGCCGAT--------------------------TTGG--GGA--ATCTGAGCCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................TGGAGTAAAACGGAGGTG...............................................................................................................................................................................................................................................................................................1814.0040000040
.................................................GTAAAACGGAGGTGTG-------TG....................................................................................................................................................................................................................................................................................1814.0040000040
...............................................GAGTAAAACGGAGGTGTG-------......................................................................................................................................................................................................................................................................................1813.0030000030
................................................AGTAAAACGGAGGTGTG-------T.....................................................................................................................................................................................................................................................................................1812.0021000010
..............................................GGAGTAAAACGGAGGTGTG-------TGTGCT................................................................................................................................................................................................................................................................................2511.0010000010
.............................................TGGAGTAAAACGGAGGTGTG-------TGTGCT................................................................................................................................................................................................................................................................................2611.0010000100
.........................................CTTTTGGAGTAAAACGGA...................................................................................................................................................................................................................................................................................................1811.0010000010
.............................................TGGAGTAAAACGGAGGTGTG-------TG....................................................................................................................................................................................................................................................................................2211.0010000010
..........GATTG--------CAGCTCATTTCTG..........................................................................................................................................................................................................................................................................................................................1811.0010000010
.........................................CTTTTGGAGTAAAACGGAGGTGTG-------TGT...................................................................................................................................................................................................................................................................................2711.0010010000
........................................ACTTTTGGAGTAAAACGGAGGTG...............................................................................................................................................................................................................................................................................................2311.0010000010
............................CATTTCTGTACAACTTTTGGA.............................................................................................................................................................................................................................................................................................................2111.0010100000
.............................................TGGAGTAAAACGGAGGTGT..............................................................................................................................................................................................................................................................................................1911.0010000010
.............................ATTTCTGTACAACTTTTGGAGTAAAAC......................................................................................................................................................................................................................................................................................................2711.0010100000
................................................AGTAAAACGGAGGTGTG-------TGTGCTTG..............................................................................................................................................................................................................................................................................2511.0011000000
................................................................................TTTTT--------C--AGCTGTGTTCGTACG...............................................................................................................................................................................................................................................2111.0010000010
........................................ACTTTTGGAGTAAAACGGAGGTGTG-------......................................................................................................................................................................................................................................................................................2511.0010000100
droYak3
GGCACTAGACGATTG--------CAGCTCACTTGAGTAGAAATTTTGGACTAAAGCGGAGGTGTG-------TGTACTTGTTTT---------C--AGATGCGCTCGCATAGTTTGTCAATTAAAATAGCCAGTG--AATGGGCGGAGAG-TCGCTTC----------------CAACCATCC---GCTGGCGATTATCT----------------------GCCC-TTTTCACCGTTCCTTGCTTCCGG---ACCTAGCTCTTTTTCG-GTT--------TCGCCATAAAATCCTGCTGAT--------------------------TTGG--GAA--ATCGGAGCCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................CACTTGAGTAGAAATTTTGGACTAAAGC......................................................................................................................................................................................................................................................................................................2812.00210100000000
................................TGAGTAGAAATTTTGGACTAAAGCGGA...................................................................................................................................................................................................................................................................................................2712.00200000000002
...............................................GACTAAAGCGGAGGTGTG-------......................................................................................................................................................................................................................................................................................1811.00101000000000
...................................GTAGAAATTTTGGACTAAAGCGGAGGT................................................................................................................................................................................................................................................................................................2711.00110000000000
..............................................GGACTAAAGCGGAGGTGC..............................................................................................................................................................................................................................................................................................1811.00100100000000
...........................................................................................................................................................TTC----------------CAACCATCC---GCTGGCGAT...........................................................................................................................................................2111.00101000000000
......................................GAAATTTTGGACTAAAGC......................................................................................................................................................................................................................................................................................................1811.00100100000000
.........................................ATTTTGGACTAAAGCGGAGGTG...............................................................................................................................................................................................................................................................................................2211.00100100000000
.............................ACTTGAGTAGAAATTTTGGA.............................................................................................................................................................................................................................................................................................................2011.00100100000000
.................................GAGTAGAAATTTTGGACTAAAG.......................................................................................................................................................................................................................................................................................................2211.00101000000000
........................................AATTTTGGACTAAAGCGGAGGTGT..............................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................AGAAATTTTGGACTAAAGCGGAGGTGT..............................................................................................................................................................................................................................................................................................2711.00101000000000
.............................ACTTGAGTAGAAATTTTGGACT...........................................................................................................................................................................................................................................................................................................2211.00101000000000
.......................................AAATTTTGGACTAAAGCGG....................................................................................................................................................................................................................................................................................................1911.00100100000000
................................................ACTAAAGCGGAGGTGTG-------T.....................................................................................................................................................................................................................................................................................1811.00100000010000
........ACGATTG--------CAGCTCACTTGA...........................................................................................................................................................................................................................................................................................................................1911.00101000000000
..............................................GGACTAAAGCGGAGGTGTG-------TG....................................................................................................................................................................................................................................................................................2111.00100000010000
.............................................TGGACTAAAGCGGAGGTGTG-------TGTA..................................................................................................................................................................................................................................................................................2411.00100000010000
........ACGATTG--------CAGCTCACTTGAGTAGA......................................................................................................................................................................................................................................................................................................................2411.00100100000000
.............................................................................................................................ATAGCCAGTG--AATGGGCGGAGAG-TCGC...................................................................................................................................................................................................2711.00100100000000
....................................................................................................................................GTG--AATGGGCGGAGAG-TCGCT..................................................................................................................................................................................................2111.00100100000000
........................................AATTTTGGACTAAAGCGGAG..................................................................................................................................................................................................................................................................................................2011.00100000010000
.....................................AGAAATTTTGGACTAAAGCGGAGGT................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................................................................................................................................................................................................................ATAAAATCCTGCTGAT--------------------------TTGG--GA..............2211.00100100000000
....................................TAGAAATTTTGGACTAAAGCGG....................................................................................................................................................................................................................................................................................................2211.00101000000000
..........................................................................................................................................................CTTC----------------CAACCATCC---GCTGGCGAT...........................................................................................................................................................2211.00100100000000
............................................................................................................................................................................................................................................................................G-GTT--------TCGCCATAAAATCCTGC....................................................2111.00101000000000
.......................................AAATTTTGGACTAAAGCGGAGGTGT..............................................................................................................................................................................................................................................................................................2511.00101000000000
.....................................AGAAATTTTGGACTAAAGCGGA...................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................................................TCC---GCTGGCGATTATCT----------------------GCCC-...........................................................................................................................2111.00100100000000
...............................................................................................................................AGCCAGTG--AATGGGCGGAGAG-TCG....................................................................................................................................................................................................2411.00100100000000
............................CACTTGAGTAGAAATTTTG...............................................................................................................................................................................................................................................................................................................1911.00100000010000
............................CACTTGAGTAGAAATTTTGG..............................................................................................................................................................................................................................................................................................................2011.00100100000000
...................................GTAGAAATTTTGGACTAAAGCGGAGA.................................................................................................................................................................................................................................................................................................2611.00100000010000
...ACTAGACGATTG--------CAGCTCACTTGA...........................................................................................................................................................................................................................................................................................................................2411.00100000010000
.............................................TGGACTAAAGCGGAGGTG...............................................................................................................................................................................................................................................................................................1811.00100000100000
.GCACTAGACGATTG--------CAGC...................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...........................................TTTGGACTAAAGCGGAGA.................................................................................................................................................................................................................................................................................................1811.00100001000000
.....................................AGAAATTTTGGACTAAAGCG.....................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................AAATTTTGGACTAAAGCGGA...................................................................................................................................................................................................................................................................................................2011.00101000000000
...............................................GACTAAAGCGGAGGTGTG-------TGTA..................................................................................................................................................................................................................................................................................2211.00100000010000
....CTAGACGATTG--------CAGCTCACTTGAGTA........................................................................................................................................................................................................................................................................................................................2611.00110000000000
droEug1
GGCATAAACCGATTG--------CAACTCACTTAAGTGGAAATTTTTGATCGAAACGGAGGTGCG-------TGTGCCTGACTTTTTAGCTCCTAAACCTTGTCGTGTGTAATTTTTTA-TAAAATTACCACGTA--AATAAACAAAAACCTCAATTT----------------CAAACATCA---ACATTGGCTATCCAATCCAGTG-----------------T-TATCCAGTGCTTTTTGTTATTCTGAAGCTTTGCATGTTTTGC---TAACGTTGCTCTTCGCAAAATATAATTAAT--------------------------TCGAGGCAA--ATAAAAACTTTSizeHit CountTotal NormTotal
No Reads
droBia1
GGCATTAGGGTACTCGATTTCACTATTCCACTTGATTGGAAATTTTCGTTTGAAGCGGAGGTGCGT--TGTGTGAGCTGGTTTCC--------C--AGC----------CTATTTGTCAATTAAA------------------CAAAGCGCTCGGTTC----------------CGAAATACA---GCAGAGGTTCAATGTTCCAGGGCGA--------------------------------------------CTTGTGTTTTTTCG-GCC--------CGGCCACCAAAAACC---GAA--------------------------TTA---CGC--TTCGAGGCAATSizeHit CountTotal NormTotal
No Reads
droTak1
GGCATTATATTA--------------TTCACTTGATTGGAAATTTTCAATTGAACCGGAGGTGTGTAGTGTGTGTGCTTGTTTTC--------C--AGCTGCTCGGCGGCGATTCATCAATTAAAGTAGCCAGTG--AATAAACAAAGGG------------------------------CCC---GCAGAGGTTTCATATTCCTGGGTGATTTGCCCCATC------------TGTT--------TT---TGGCCT------TCTGCATAAT--------TCTTCACCTAATCCC---AATTCGGGTTTATT------------------A--TAG--ATTAAAG----SizeHit CountTotal NormTotal
No Reads
droEle1
GGCAGCAAACGATTC--------TAGCTCATTTAAGTGGAAATTTTCGATCAAAGCGGAGGTGTG-------TGTGTTTTTTTTT--CAGCTCT--TACTGCTCAAGTGTAATTTGTCAATTAAAATACCAAGTG--AATGAACAAAGACCTCAAGTC----------------CAACAACCA---GCAGAGGTTTAATTTCCTTCTGCTAATTG------------------TAGAT-------TTT---CGGCTTTGCACTTTGTAC-ATTTCCA-----------------CTGCTCTT---------TT---------------ATAG--TTT--ATCTGGGCAGTSizeHit CountTotal NormTotal
No Reads
droRho1
GGCAGCAGACGATAC--------TAGCTCATTTAAGTAGAAATTTTCGATTAAAGCAGAGGTGCG-------TGTGATTCTCTTC--TAGCTTT--AATTGCTCCAGTGTAATTTGTCAATTAAAATATCAAGTG--AATAAACAAAGGCCTCATTTC----------------CGAAGACCA---GCACAGGTTTATTTTCCTTGTGCGATTTG------------------CGGTT-------TTT---CGGCCTGACACTTTTTTTTATTTATATAGCTTTTCATATAATA----TAAT--------------------------TTGG--GGATGTTCAAGACTTTSizeHit CountTotal NormTotal
No Reads
droFic1
GGCAGTAAACGAACT--------CAGCTCACTTATTTGGAAATTTTCGATTGAACCGGAGGTGCG-------TGTGCTTGTTTTTT-CAATCTT--AACTGTTCTAACATTATTTGTCAATTAAAATAGTCAGTG--AACAAAAGCATAG-AACAATT----------------CAAACTTCC---GAATAAGTTTATTT----------------------TCCCATCTTCGTGGTTTTC------CGC---ACCTTGCAGTTTTTCA-ATT------------CACTA------GGTGTT--------------------------TACA--TAA--AATAATGCATTSizeHit CountTotal NormTotal
No Reads
droKik1
GGCAGCAAACGAAAG--------CAGCTCACTTACGTTACAATTTTCGATCAACCCGGAGGTGTG-------TGTGCTTGCTTTGC--GAACCT--TGTGTTTTGGGGACAATTTGTCAATTAAA-CAGTAAAGATTTATAAACAAAGAG-TGCCTTTCCAGTGGTATTTCCGCGACAAAAGC---GTAGGGCCTTTCTTTTTCGGTGTGTTTTTCCAAATC------GGGGGACCTTCA-ACTTTCCAA-----TATGT--TTTTCTTCGTG--------CCTTTGCCAGAACTAAT--------------CGTACATTTAAGTGATTCGTGG--------CGAATATTSizeHit CountTotal NormTotal
No Reads
droAna3
GGCAGTCAAGGAAAG--------TGTTTCATTCGAGTGGAAATTTTCAATTGAAGCAGAGGTGTG-------TCTCGTTTTCTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................GAGTGGAAATTTTCAATTGAAGC......................................................................................................................................................................................................................................................................................................2315.005030011
.........................................ATTTTCAATTGAAGCAGAGT.................................................................................................................................................................................................................................................................................................2013.003110010
......................................GAAATTTTCAATTGAAGCAGA...................................................................................................................................................................................................................................................................................................2112.002000110
.....................................GGAAATTTTCAATTGAAGCAGAG..................................................................................................................................................................................................................................................................................................2311.001000010
.......AAGGAAAG--------TGTTTCATTCGAGTGGA......................................................................................................................................................................................................................................................................................................................2511.001010000
..........GAAAG--------TGTTTCATTCGAG..........................................................................................................................................................................................................................................................................................................................1811.001010000
.......................................AAATTTTCAATTGAAGCAGACT.................................................................................................................................................................................................................................................................................................2211.001000010
..............................................CAATTGAAGCAGAGGTGTG-------T.....................................................................................................................................................................................................................................................................................2011.001100000
.....................................GGAAATTTTCAATTGAAGCAGAGT.................................................................................................................................................................................................................................................................................................2411.001000010
.............................................TCAATTGAAGCAGAGGTGT..............................................................................................................................................................................................................................................................................................1911.001000010
.....................................GGAAATTTTCAATTGAAGC......................................................................................................................................................................................................................................................................................................1911.001010000
........................................AATTTTCAATTGAAGCAGAGT.................................................................................................................................................................................................................................................................................................2111.001000010
.............................................TCAATTGAAGCAGAGGTGTG-------......................................................................................................................................................................................................................................................................................2011.001000010
.....................................GGAAATTTTCAATTGAAGCAGAGGTGT..............................................................................................................................................................................................................................................................................................2711.001100000
............................................TTCAATTGAAGCAGAGGTG...............................................................................................................................................................................................................................................................................................1911.001100000
...............................................AATTGAAGCAGAGGTGTG-------TCT...................................................................................................................................................................................................................................................................................2111.001000010
.........................................ATTTTCAATTGAAGCAGAGGTGTG-------TCT...................................................................................................................................................................................................................................................................................2711.001100000
.........................................ATTTTCAATTGAAGCAGA...................................................................................................................................................................................................................................................................................................1811.001010000
.........................................ATTTTCAATTGAAGCAGAGC.................................................................................................................................................................................................................................................................................................2011.001010000
..............G--------TGTTTCATTCGAGTGGAA.....................................................................................................................................................................................................................................................................................................................1911.001010000
............................................TTCAATTGAAGCAGAGGTGTA-------......................................................................................................................................................................................................................................................................................2111.001000001
......................................GAAATTTTCAATTGAAGCAGAG..................................................................................................................................................................................................................................................................................................2211.001000010
............................................TTCAATTGAAGCAGAGGTGTG-------......................................................................................................................................................................................................................................................................................2111.001000010
................................CGAGTGGAAATTTTCAATTGAAGCA.....................................................................................................................................................................................................................................................................................................2511.001000010
........................................AATTTTCAATTGAAGCAGAG..................................................................................................................................................................................................................................................................................................2011.001000010
......................................GAAATTTTCAATTGAAGCAGAGT.................................................................................................................................................................................................................................................................................................2311.001010000
.............................................TCAATTGAAGCAGAGGTGTG-------TCTCG.................................................................................................................................................................................................................................................................................2511.001100000

Generated: 05/19/2015 at 05:15 AM