ID:

dsi_6434

 Coordinate:

3l:12640860-12641009 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.0 -11.0 -10.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
DNAREP1_DMRCHelitron-
mature
  1. 2l:20761553-20761576 +
  2. 2l:20866656-20866679 +
  3. 2l:21153383-21153406 +
  4. 2l:21350289-21350312 +
  5. 2l:21395509-21395532 +
  6. 2l:21418540-21418563 +
  7. 2r:1274403-1274426 +
  8. 3l:23146396-23146419 +
  9. 3l:23347966-23347989 +
  10. 3r:7107374-7107397 +
  11. 4:158388-158411 +
  12. 4:668842-668865 +
  13. 4:703593-703616 +
  14. x:529604-529627 +
  15. x:19730138-19730161 +
  16. x:20419523-20419546 +
  17. node_22030:5561-5584 +
  18. node_53674:1211-1234 +
  19. node_8451:258-281 +
  20. node_12893:6090-6113 +
  21. 2l:22542601-22542624 +
  22. 2l:22667048-22667071 +
  23. 2l:23205428-23205451 +
  24. 2l:23501877-23501900 +
  25. 2r:178186-178209 +
  26. 2r:1495735-1495758 +
  27. 2r:2299892-2299915 +
  28. 2r:3783947-3783970 +
  29. 3l:22469758-22469781 +
  30. 3l:22773156-22773179 +
  31. 3l:23122171-23122194 +
  32. 3r:7425-7448 +
  33. 3r:75129-75152 +
  34. 3r:13466910-13466933 +
  35. 4:265441-265464 +
  36. 4:644657-644680 +
  37. x:20110588-20110611 +
  38. x:20700807-20700830 +
  39. node_27873:514-537 +
  40. node_7897:1081-1104 +
  41. 2l:21874186-21874209 -
  42. 2l:22894949-22894972 -
  43. 2l:23531541-23531564 -
  44. 2r:689505-689528 -
  45. 2r:1791603-1791626 -
  46. 2r:2429345-2429368 -
  47. 2r:2457865-2457888 -
  48. dsi_6434  3l:12640869-12640892 -
  49. 3l:23662195-23662218 -
  50. 3l:23774453-23774476 -
  51. 3r:331380-331403 -
  52. 4:85890-85913 -
  53. 4:233421-233444 -
  54. 4:924835-924858 -
  55. 4:1024568-1024591 -
  56. x:20497634-20497657 -
  57. x:20771172-20771195 -
  58. node_40194:2241-2264 -
  59. node_57944:2034-2057 -
  60. node_12772:1077-1100 -
  61. 2l:21222510-21222533 +
  62. 2l:22405355-22405378 +
  63. 2r:532173-532196 +
  64. 3l:22465731-22465754 +
  65. 4:808933-808956 +
  66. x:21572-21595 +
  67. 3l:24215442-24215465 -
  68. 4:74011-74034 -
  69. node_3296:1999-2022 -
  70. node_30916:2321-2344 -
star
  1. 2l:20946172-20946196 -
  2. 2r:128575-128599 -
  3. 2r:2505181-2505205 -
  4. 2r:4636204-4636228 -
  5. 2r:8264397-8264421 -
  6. dsi_6434  3l:12640937-12640961 -
  7. 3l:17834496-17834520 -
  8. 3l:19700385-19700409 -
  9. 3l:20457581-20457605 -
  10. 3l:22389571-22389595 -
  11. 3l:23131124-23131148 -
  12. 4:69876-69900 -
  13. 4:371395-371419 -
  14. x:10397-10421 -
  15. x:14620007-14620031 -
  16. x:15269445-15269469 -
  17. node_101820:4037-4061 -
  18. node_69695:102-126 -
  19. node_118775:40-64 -
  20. node_13518:4901-4925 -
  21. 2l:20643327-20643351 -
  22. dsi_8644  2l:20898923-20898947 -
  23. 2l:22071482-22071506 -
  24. dsi_8278  2l:22297869-22297893 -
  25. 2l:23002357-23002381 -
  26. dsi_3620  2r:1069852-1069876 -
  27. dsi_5232  2r:1136018-1136042 -
  28. 2r:1651471-1651495 -
  29. 2r:2410582-2410606 -
  30. 2r:3118138-3118162 -
  31. 2r:3129436-3129460 -
  32. 2r:10579772-10579796 -
  33. 3l:22844451-22844475 -
  34. 3l:23662322-23662346 -
  35. 3l:24029583-24029607 -
  36. 3r:379918-379942 -
  37. 4:134092-134116 -
  38. x:11508577-11508601 -
  39. node_56646:4688-4712 -
  40. node_3978:344-368 -
  41. 2l:22135524-22135548 -
  42. 2r:687677-687701 -
  43. 2r:1377134-1377158 -
  44. 3l:22514116-22514140 -
  45. 3r:404857-404881 -
  46. x:20431664-20431688 -
  47. node_128172:92-116 -
  48. node_22144:95-119 -
  49. 2l:17017759-17017783 +
  50. 2l:22798837-22798861 +
  51. 2l:23232031-23232055 +
  52. 2r:396266-396290 +
  53. 2r:728253-728277 +
  54. 2r:1091359-1091383 +
  55. dsi_3027  2r:3185724-3185748 +
  56. 2r:17980526-17980550 +
  57. 3l:19802262-19802286 +
  58. 3r:1680899-1680923 +
  59. 3r:2789873-2789897 +
  60. dsi_11924  x:3395778-3395802 +
  61. x:14770860-14770884 +
  62. x:19183801-19183825 +
  63. x:20030524-20030548 +
  64. node_87771:10-34 +
  65. node_56465:5-29 +
  66. node_6097:144-168 +
  67. node_26362:245-269 +
  68. node_128738:31-55 +

Sense Strand Reads

CGTGCACTCTGCTGAGATCGAGGCTCTTGGCTGTACAAAACGAGATCGAGGTATGAAAGTTACTGAGTCTTTATTATACCCATTACTCGTAAAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGAAACAGGAAGAAAAAGCCGTCCGTCTGTCCGTAAGAACGTCGAGATCTCAGGAACTATAAAAGCTAGAAGGTTAAAATTCAGCGCAAGTTTGTTTACCCATGGTGCCACATTATACATTATTT
**************************************************************************************************..(((...(((((((..((((....((((..(((((..((........))..))))).))))......))))))))).))..)))........*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 O001
Testis
 O002
Head
 M053
female body
 M023
head
 M024
male body
.......................................................................................................................................................................CGAGATCTCAGGAACTATAAAAGC........................................................... 24 0 20 29.50 590 542 0 48 0 0 0 0 0 0 0 0 0
...............................................................................................................TTCGTTGAAAAGTATGAAACAGGGA.................................................................................................................. 25 1 5 22.80 114 50 35 10 19 0 0 0 0 0 0 0 0
..................................................................................................AGGGTATACTAGATTCGTTGAAAAG............................................................................................................................... 25 0 20 3.90 78 78 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTCGTTGAAAAGTATGAAACAGGGAGA................................................................................................................ 27 1 5 3.00 15 4 7 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTTA................................................. 26 0 14 1.64 23 4 3 1 4 0 10 1 0 0 0 0 0
...............................................................................................................TTCGTTGAAAAGTATGAAACAGGAAGA................................................................................................................ 27 0 2 1.50 3 1 0 1 1 0 0 0 0 0 0 0 0
..................................................................................................AGGGTATACTAGATTCGTTGAAAAGT.............................................................................................................................. 26 0 20 1.30 26 0 0 0 0 21 5 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTT.................................................. 25 0 20 1.00 20 0 0 0 0 0 0 20 0 0 0 0 0
................................................................................................................TCGTTGAAAAGTATGAAACAGGAAGA................................................................................................................ 26 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................TTCGTTGAAAAGTATGAAACAGGAA.................................................................................................................. 25 0 2 1.00 2 0 0 1 1 0 0 0 0 0 0 0 0
...........................................................TTACTGAGTCTTTATTATAC........................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................AAAAGGGTATACTAGATTCGTTGAA.................................................................................................................................. 25 0 20 0.85 17 0 0 0 17 0 0 0 0 0 0 0 0
................................................................................................................TCGTTGAAAAGTATGAAACAGGGAGA................................................................................................................ 26 1 5 0.80 4 0 3 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTAA................................................. 26 1 18 0.67 12 0 0 0 0 0 11 1 0 0 0 0 0
...................................................................................................................................................................................AACTATAAAAGCTAGAAGGTTA................................................. 22 0 20 0.60 12 0 0 0 0 0 0 0 0 12 0 0 0
...................................................................................................................................................................................AACTATAAAAGCTAGAAGGTTAA................................................ 23 0 20 0.60 12 0 0 0 0 0 0 0 12 0 0 0 0
..........................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAG........................................................ 24 0 20 0.55 11 0 0 0 0 11 0 0 0 0 0 0 0
.................................................................................................................CGTTGAAAAGTATGAAACAGGAAGA................................................................................................................ 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTACCCATGGCGCCA............... 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................TCGTTGAAAAGTATGAAACAGGAA.................................................................................................................. 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GTCCGTCTGTCCGTAAGAACGTCGA................................................................................ 25 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTTGAAGGTTA................................................. 26 1 15 0.47 7 1 0 0 0 0 1 5 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTTAA................................................ 27 0 14 0.43 6 0 0 0 0 0 6 0 0 0 0 0 0
...............................................................................................................................................................................GAGGAACTATAAAAGCTAGAAGGT................................................... 24 1 20 0.40 8 0 0 0 8 0 0 0 0 0 0 0 0
...............................................................................................AAAAGGGTATACTAGA........................................................................................................................................... 16 0 20 0.40 8 0 0 0 0 8 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGCTATA............................................... 28 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AAGTTTGTTTACCCATGGCGTC................ 22 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAGTTTGTTTACCCATGGCGT................. 21 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTTAT................................................ 27 1 16 0.31 5 0 0 0 0 0 4 1 0 0 0 0 0
............................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAAGGT................................................... 27 0 20 0.30 6 1 3 0 0 0 2 0 0 0 0 0 0
......................................................................................TCGTAAAGTAAAAGGGTATACTAG............................................................................................................................................ 24 0 11 0.27 3 0 0 0 0 3 0 0 0 0 0 0 0
...............................................................................................................TTCGTTGAAAAGTAGGAAACAGG.................................................................................................................... 23 1 8 0.25 2 0 0 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................................TGTCCGTAAGAACGTCGAGATCTCA......................................................................... 25 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAG..................................................... 22 0 20 0.25 5 0 0 5 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGTCCGTAAGAACGTCGAGATCTCAGG....................................................................... 27 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TCCGTCTGTCCGTAAGAACGTCGAGA.............................................................................. 26 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAGGAACTATAAAAGCTAGAAGGTTA................................................. 27 0 14 0.21 3 0 1 0 0 0 2 0 0 0 0 0 0
............................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAAGG.................................................... 26 0 20 0.20 4 0 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GTCCGTAAGAACGTCGAGATCTCA......................................................................... 24 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................TCAGGAACTATAAAAGCTAGAAGGT................................................... 25 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0 0
..................................................................................................................GTTGAAAAGTATGAAACAGGGAGA................................................................................................................ 24 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................GAGGTATGAAGGTTATTGAA....................................................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GTCCGTAAGAACGTCGAGATCTCAGGA...................................................................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TCCGTAAGAACGTCGAGATCTCAGGAA..................................................................... 27 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TAGATTCGTTGAAAAGTATGAAATGGG.................................................................................................................... 27 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TTCGTTGAAAAGTATGAAACAGGG................................................................................................................... 24 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TTCGTTGAAAAGTATGAAACAGGGC.................................................................................................................. 25 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................TCGTAAAGTAAAAGGGT................................................................................................................................................... 17 0 19 0.16 3 0 0 0 0 3 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTCAT................................................ 27 2 20 0.15 3 0 0 0 0 0 1 2 0 0 0 0 0
.....................................................................................................GTATACTAGATTCGTTG.................................................................................................................................... 17 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0
..................................................................................................................................................TCCGTCTGTCCGTAAGAACGTCGACA.............................................................................. 26 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TATAAAAGCTAGAACGTTAAA............................................... 21 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................TTTCGTTGAAAAGTATGAAACAGGGA.................................................................................................................. 26 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTTGAAGGTTAA................................................ 27 1 15 0.13 2 0 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGACAA................................................ 27 2 15 0.13 2 0 0 0 0 0 0 2 0 0 0 0 0
...............................................................................................................TTCGTTGAAAAGTATGAAA........................................................................................................................ 19 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................TAGATTCGTTGACAAGTATGAAATAGT.................................................................................................................... 27 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGTCCGTAAGAACGTCGAGATCA........................................................................... 23 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................TCGTAAAGTAAAAGGGTATACTAGAT.......................................................................................................................................... 26 0 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................TCGTAAAGTAAAAGGGTATACTAGA........................................................................................................................................... 25 0 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................CAGGAACTATAAACACTAGAAGATTAAA............................................... 28 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................GAGATCTCAGGAACTATAAAAGCTA......................................................... 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................GTAAAAGGGTATACTAGATTCGTTGAAA................................................................................................................................. 28 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTCGAGATCTCAGGAACT................................................................... 18 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0
............................................................................................................AGATTCGTTGAAAAG............................................................................................................................... 15 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................TACTAGATTGGTTGAAAAGTATGATA........................................................................................................................ 26 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGATGGATA................................................. 26 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
........................................................................................................................................................................GAGATCTCAGGAACTATAAAAGCT.......................................................... 24 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................CGAGATCTCAGGTACTATAAAAGCTAG........................................................ 27 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CGAGATCTCAGGAACTATAAA.............................................................. 21 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................TGTAAGAAAGTCGAGATCTCAGGAACTA.................................................................. 28 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCGTAAAGTAAAAGGGTATACTA............................................................................................................................................. 23 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTGAA................................................ 27 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................AAAGCTAGAAGGTTCAAGTCCAG......................................... 23 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AGGAACTATAAAAGCTAGAAGGTTAA................................................ 26 0 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................TCGTTGAAAAGTATGAAAAAGGGAGAA............................................................................................................... 27 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TTCGTTGAAAATTATGAAACAGGGAGA................................................................................................................ 27 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGATAA................................................ 27 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................TCAGGAACTATAAAAGCTAGAAGGTAAA................................................ 28 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................TCGTTGAAAAGTATGAAAAAGGGAG................................................................................................................. 25 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGATA................................................. 26 1 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................CAGGATCTATAAAAGCTAGAAGGTTA................................................. 26 1 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TAAAGTAAAAGGGTATACGAGA........................................................................................................................................... 22 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AGGAACTATAAAAGCTTGAAGGTTA................................................. 25 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTAAAC............................................... 28 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................TCGTAAAGTAAGAGGGTATACTAGAT.......................................................................................................................................... 26 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................TAGTAAAGTAAAAGGGTATACGAGA........................................................................................................................................... 25 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTGA................................................. 26 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGTTTA................................................. 26 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................CTCGTAAAGTAAAAGGG.................................................................................................................................................... 17 0 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TATACCCCTTACTCGTAAAGGAAA........................................................................................................................................................ 24 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGATAT................................................ 27 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTCAC................................................ 27 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TAGTATGGAACAGGAAG................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGATGGTTA................................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AACTATAAAAGCTAGAAGGT................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TAGGAACTATAAAAGCTAGAGGGTTA................................................. 26 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................TATACTAGATTCGTTGAAAAGTAT............................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TCGAGATCTCAGGAACTATAAAAGC........................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAGAAG..................................................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TCATGAACTATAAAAGCTAGAAGGTTAA................................................ 28 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................AAGGGTATACTAGATTCGTTG.................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................AAAGTAAAAGGGTATACTAGA........................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAGGAACTATAAAAGCTAGA....................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CGTCGAGATCTCAGG....................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TAGGAACTATAAAAGCTAGAAGGTTA................................................. 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGACGGTT.................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................GGGTATACTAGATTCGTTGAAAAGT.............................................................................................................................. 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................AAAAGGGTATACTAGATTCGTTGAAAAGTA............................................................................................................................. 30 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGGACTATAAAAGCTAGAAGGT................................................... 24 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................GTCCGTCTGTCCGTAAAA....................................................................................... 18 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGGACTATAAAAGCTAGAAGG.................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................ACTATAAAAGCTAGAAGGT................................................... 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TAAAGTAAAAGGGTA.................................................................................................................................................. 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................GTAAAAGGGTATACTAGATTCGTT..................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................AAGGGTATACTAGATTCGTTGAAAAGTA............................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AAAGGGTATACTAGATTCGTTGAAAA................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................GTAAAAGGGTATACTAGATTCGTTGAAAA................................................................................................................................ 29 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GAGGAACTATAAAAGCTAGAAGG.................................................... 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TATAAAAGCTAGAAGGTTA................................................. 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................TAAAAGGGTATACTAGATTCGTTGAAAAC............................................................................................................................... 29 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGATGGTAA................................................. 26 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................GAACTATAAAAGCTAG........................................................ 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGGAA................................................. 26 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................CGAGATCTCAGGAACTATAAAAGCTAGA....................................................... 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................GAACGTCGAGATCTCAGGAAC.................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................AGGGTATACTAGATTCGTTGAAA................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAGGAACTATAAAAGCTA......................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAGGAACTATAAAAGCTAGAAGG.................................................... 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TAGGAACTATAAAAGCTAGAGGGGTAA................................................ 27 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGGT.................................................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................AGGGTATACTAGATTCGTTGA................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAACTATAAAAGCT.......................................................... 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAA...................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCACGTGAGACGACTCTAGCTCCGAGAACCGACATGTTTTGCTCTAGCTCCATACTTTCAATGACTCAGAAATAATATGGGTAATGAGCATTTCATTTTCCCATATGATCTAAGCAACTTTTCATACTTTGTCCTTCTTTTTCGGCAGGCAGACAGGCATTCTTGCAGCTCTAGAGTCCTTGATATTTTCGATCTTCCAATTTTAAGTCGCGTTCAAACAAATGGGTACCACGGTGTAATATGTAATAAA
***********************************************************..(((...(((((((..((((....((((..(((((..((........))..))))).))))......))))))))).))..)))........************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
 SRR902009
testis
 M024
male body		 M053
female body
 GSM343915
embryo
................................................................................................................................................................TCTTGCAGCTCTAGAGTCCTTGATA................................................................. 25 0 3 30.00 90 1 34 15 12 6 17 1 2 2 0 0
.................................................................................................................................................................CTTGCAGCTCTAGAGTCCTTGATA................................................................. 24 0 20 20.40 408 202 0 113 87 0 0 0 6 0 0 0
..................................................................................................................................................................TTGCAGCTCTAGAGTCCTTGATA................................................................. 23 0 20 12.90 258 78 0 0 0 153 0 27 0 0 0 0
..................................................................................................................................................................TTGCAGCTCTAGAGTCCTTGATAT................................................................ 24 0 20 10.50 210 55 68 63 20 0 4 0 0 0 0 0
........................................................................................................................................................ACAGGCATTCTTGCAGCTCTAGAGT......................................................................... 25 0 4 5.75 23 3 2 7 5 4 2 0 0 0 0 0
...............................................................................................................................................................TTCTTGCAGCTCTAGAGTCCTTGATA................................................................. 26 0 2 5.00 10 1 5 1 3 0 0 0 0 0 0 0
...................................................................................ATGAGCATTTCATTTTCCCATATGAT............................................................................................................................................. 26 0 7 2.86 20 14 0 6 0 0 0 0 0 0 0 0
......................................................................................................................................................AGACAGGCATTCTTGCAGCTCTAGAGT......................................................................... 27 0 4 2.75 11 1 0 1 8 1 0 0 0 0 0 0
..................................................................................................................................................................TTGCAGCTCTAGAGTCCTTGATATTT.............................................................. 26 0 20 2.25 45 0 8 20 12 3 1 0 1 0 0 0
..................................................................................................................................................................TTGCAGCTCTAGAGTCCTTGATATT............................................................... 25 0 20 1.80 36 23 0 0 0 0 0 13 0 0 0 0
....................................................................................TGAGCATTTCATTTTCCCATATGAT............................................................................................................................................. 25 0 7 1.71 12 10 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAGGCATTCTTGCAGCTCTAGAGT......................................................................... 24 0 5 1.60 8 2 0 2 1 0 3 0 0 0 0 0
..............................................................................................................................................................ATTCTTGCAGCTCTAGAGTCCTTGATA................................................................. 27 0 2 1.50 3 1 0 0 0 2 0 0 0 0 0 0
.........................................................TCAAAGGCTCAGAAATAAT.............................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................TCTTTCAGCTCTAGAGTCCTTGATA................................................................. 25 1 8 1.00 8 0 0 0 3 5 0 0 0 0 0 0
....................................................................................................................................CCTTCTTTTTCGGCAGGCAGACAGGCA........................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGCTTTAGAGTCCTTGATA................................................................. 25 1 20 0.90 18 0 2 0 0 1 0 13 2 0 0 0
......................................................................................................................................................................AGCTCTAGAGTCCTTGATATTTTCGAT......................................................... 27 0 20 0.80 16 14 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................GCAGCTCTAGAGTCCTTGATA................................................................. 21 0 20 0.80 16 0 16 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGCTGTAGAGTCCTTGATA................................................................. 25 1 5 0.80 4 3 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................GACAGGCATTCTTGCAGCTCTAGAGT......................................................................... 26 0 4 0.75 3 0 0 1 0 0 0 1 0 0 1 0
................................................................................................................................................................TCTTGCAGCTCTAGAGTCCTTGATAT................................................................ 26 0 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................CTTGCAGCTCTAGAGTCCTTGATAT................................................................ 25 0 20 0.55 11 5 1 4 0 0 0 0 0 0 1 0
........................................................................................................................................................ACCGGCATTCTTGCAGCTCTAGAGT......................................................................... 25 1 4 0.50 2 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................TGCAGCTCTAGAGTCCTTGAT.................................................................. 21 0 20 0.50 10 0 8 2 0 0 0 0 0 0 0 0
...............................................................................................................AAGCAACTTTTCATACTTTGTCCTT.................................................................................................................. 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................TTTTGGGCAGGAAGACAGGTA........................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................TGCAGCTCTAGAGTCCTTGATA................................................................. 22 0 20 0.50 10 0 0 10 0 0 0 0 0 0 0 0
................................................................................................................................................................TATTGCAGCTCTAGAGTCCTTGATA................................................................. 25 1 7 0.43 3 0 0 0 0 0 0 3 0 0 0 0
...................................................................................................................................................................TGCAGCTCTAGAGTCCTTGATATT............................................................... 24 0 20 0.35 7 4 0 0 0 0 0 3 0 0 0 0
..................................................................................................TCCCATATGATCTAAGCAACTTT................................................................................................................................. 23 0 20 0.35 7 0 1 0 0 6 0 0 0 0 0 0
......................................................................................................................................TTCTTTCTCGGGAGTCAGACA............................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................TTTTGCGGCAGGCAGGCAGGCA........................................................................................... 22 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................CAGACAGGCATTCTTGCAGCTCTAGAGT......................................................................... 28 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTTTTGCAGCTCTAGAGTCCTTGATA................................................................. 26 1 9 0.33 3 0 0 0 2 0 0 1 0 0 0 0
................................................................................................................................................................TCTTGCAGCTCTAGAATCCTTGATA................................................................. 25 1 16 0.31 5 0 0 0 2 0 0 3 0 0 0 0
................................................................................................................................................................TATTGCAGCTCTAGAATCCTTGATA................................................................. 25 2 20 0.30 6 0 0 0 0 0 0 6 0 0 0 0
...................................................................................................................................................................TGCAGCTCTAGAGTCCTTGATAT................................................................ 23 0 20 0.30 6 0 0 0 6 0 0 0 0 0 0 0
...................................................................................................................................ACCTTCTAATTCGGCAGGC.................................................................................................... 19 3 7 0.29 2 0 0 0 0 0 0 0 0 0 0 2
.............................................................................................................CTAAGCAACTTTTCATACTTTGTC..................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ACAGGCATTCTTGCAGCTCTAGA........................................................................... 23 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGTTCTAGAGTCCTTGATA................................................................. 25 1 8 0.25 2 0 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................TTTTGCAGCTCTAGAGTCCTTGATA................................................................. 25 1 12 0.25 3 0 1 0 1 0 0 0 1 0 0 0
..................................................................................................................................................AGGCAGACAGGCATTCTTGCAGCTCT.............................................................................. 26 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................TGCAGCTCTAGAGTCCTTGATATTT.............................................................. 25 0 20 0.25 5 1 4 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGACAGGCATTCTTGCAGCTCTAGAGTCCT...................................................................... 30 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................GGCAGACAGGCATTCTTGCAGCTCT.............................................................................. 25 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................AACAGGCATTCTTGCAGCTCTAGAGT......................................................................... 26 1 9 0.22 2 0 0 0 0 0 0 1 1 0 0 0
................................................................................................................................................................TCTTGCAGCTCTGGAGTCCTTGATA................................................................. 25 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................ATCTTGCAGCTCTAGAGTCCTTGATA................................................................. 26 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGGCATTCTTGCAGCTCTAGAGT......................................................................... 23 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGCTCTAGGGTCCTTGATA................................................................. 25 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GCAGCTCTAGAGTCCTTGATATTTT............................................................. 25 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0
....................................................................................TGAGCATTTCATTTTCCCATATGATCT........................................................................................................................................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTATTGCAGCTCTAGAGTCCTTGATA................................................................. 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................TTGCAGCTCTAGAGTCCTTGATATTTT............................................................. 27 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGCATTCTTGCAGCTCTAGAGTCCT...................................................................... 25 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGCTCTAGAGTCCTTGAGA................................................................. 25 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGCTCTAGAGT......................................................................... 17 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGGCATTCTTGCAGCTCTAGATTCCT...................................................................... 26 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TACAGGCATTCTTGCAGCTCTAGAGT......................................................................... 26 1 13 0.15 2 0 0 0 0 2 0 0 0 0 0 0
................................................................................................................................................GCAGGCAGACAGGCAT.......................................................................................... 16 0 13 0.15 2 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ATGCAGCTCTAGAGTCCTTGATA................................................................. 23 1 20 0.15 3 0 0 1 0 0 1 1 0 0 0 0
...................................................................................................................................................................TGCAGCTCTAGAGTCCTTGATATTTT............................................................. 26 0 20 0.15 3 0 0 0 0 0 2 0 0 1 0 0
.....................................................................................................................................................................CAGCTCTAGAGTCCTTGATATTTT............................................................. 24 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0
................................................................................................................................................................TATTGCAGCTCTAGAGTCCTTGATG................................................................. 25 2 20 0.15 3 0 0 0 0 0 0 2 1 0 0 0
.........................................................................................................................................TTTTTCGGCTGCCAGACAA.............................................................................................. 19 3 20 0.15 3 0 0 0 0 0 0 0 3 0 0 0
......................................................................................................................................................AAACAGGCATTCTTGCAGCTCTAGAGT......................................................................... 27 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................TTCTTTCAGCTCTAGAGTCCTTGATA................................................................. 26 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................TGACAGGCATTCTTGCAGCTCTAGAGT......................................................................... 27 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGCTCTAGAGTCCTTGATCT................................................................ 26 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................TCCTGCAGCTCTAGAGTCCTTGAT.................................................................. 24 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TATTGCAGCTCTAGAGTCCTTGATAT................................................................ 26 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GGCAGGACGACAGACATTCT....................................................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................AGACAGGCATTCTTGCAGCTCTAGGGT......................................................................... 27 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGCTCTAGAGTCCTTTATA................................................................. 25 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTAATGCAGCCCTAGAGTCCTTGATA................................................................. 26 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TTTTGCAGCTCTAGAGTCCTTGATATTT.............................................................. 28 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TATTGCAGCCCTAGAGTCCTTGATA................................................................. 25 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................AGTAATATGGGTAATGAGCATGTCAT.......................................................................................................................................................... 26 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................CTCTAGAGTCCTTGAT.................................................................. 16 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CAGCTCTAGAGTCCTTGATATT............................................................... 22 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................................................AGAGTCCTTGATATTTTCGATCTTC..................................................... 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGCTCTAGAGCCCTTGATA................................................................. 25 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CTCTAGAGTCCTTGATA................................................................. 17 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTGCAGCTCTAGAGT......................................................................... 15 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................GGCAGGCAGACAGGCAT.......................................................................................... 17 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................ATTTTCCCATATGATCTAAGCAACTTT................................................................................................................................. 27 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
.....................................................................................................................................................................CAGCTCTAGAGTCCTTGATAT................................................................ 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGCTCTAGAGTCCTTGATATTTTCGATCTT...................................................... 30 0 20 0.10 2 0 0 1 0 1 0 0 0 0 0 0
................................................................................................................................................................TTTTGCAGCTCTAGAATCCTTGATA................................................................. 25 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0
...........................................................................................................................................TTTAGGCAGGCAGGCAGGTAT.......................................................................................... 21 3 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
............................................................................................................................................................AAAATCTTGCAGCTCTAGAGTCCTTGATA................................................................. 29 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................TATTGCAGCTCTAGATTCCTTGATA................................................................. 25 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................AGCTCTAGAGTCCTTGATATT............................................................... 21 0 20 0.10 2 0 0 0 0 0 0 1 0 0 1 0
................................................................................................................................................................TATCGCAGCTCTAGAGTCCTTGATA................................................................. 25 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................TAACAGGCATTCTTGCAGCTCTAGAGT......................................................................... 27 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................AGACATTCTTTCAGCTCTAGAGTCCT...................................................................... 26 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................TCTTTCAGCTCTAGTGTCCTTGATA................................................................. 25 2 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TATTGCAGCTCTAGAGCCCTTGATA................................................................. 25 2 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................ATCTGATCTAAGCAACTTTTCATAATG......................................................................................................................... 27 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................TTTTGCAGCTCTAGAGTCCTTGACA................................................................. 25 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................TTTTTGCAGATCTAGAGTCCTTGATA................................................................. 26 2 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................CTAAGCAACTTTTCATAGTTT........................................................................................................................ 21 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................ATGGGTAATGAGCAT............................................................................................................................................................... 15 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTTTTGACAGGCAGACAGGCATAC........................................................................................ 24 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................AAAATGGGTAATGAGCAT............................................................................................................................................................... 18 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................GGCTTCTTTTTTGGCAGGC.................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................TTGCAGCTCTAGAGTCCTTGAT.................................................................. 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................TTGCAGCTCTAGAGTCCTTGACATTTT............................................................. 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................AGGCAGACTGGCGTTCTT...................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................CTTGCAGCTCTAGAGTCCT...................................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................AGCTCTAGAGTCCTTGATA................................................................. 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................TTGCAGCTCTAGAGTC........................................................................ 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TATGATCTAAGCAACTTT................................................................................................................................. 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................CATTTTCCCATATGATCTAAGCAACTTT................................................................................................................................. 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................TTTCCCATATGATCTAAGCAACT................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................AGCTCTAGAGTCCTTGATAT................................................................ 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCTTGCAGCTTTAGAGTCCTTGTTA................................................................. 25 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................TGATATTTTCGATCTTCCAAT................................................. 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CAGCTCTAGAGTCCTTGATATTTTCGAT......................................................... 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................ATGAGCATTTCATTT........................................................................................................................................................ 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TTTTGCAGCTCTAGAGACCTTGATA................................................................. 25 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................AGAAGATGGGTAGTGAGCA................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................TTTCCCATATGATCTAAGCAACTTTT................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................TTGCAGCTCTAGAGTCCTT..................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................TGCAGCTCTAGAGTC........................................................................ 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTTGCAGCTCTAGAGTGCTTGATA................................................................. 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TTGGCCTTCTTTTTC........................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................GCAGCTCTAGAGTCCTTGATAT................................................................ 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTTGCAGCTCTAGAGTCCTTGATATTT.............................................................. 27 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................CTTCTTTTTTGGCATGC.................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................TATGGGTAATGAGCATGT............................................................................................................................................................. 18 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTTGCAGCTCTAGAGTCCTTG.................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................TATTGCAGCTCTAGAGTCCTTAATT................................................................. 25 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:12640810-12641059 - dsi_6434 CGTGCACTCTGCTGAGATCGAGGCTCTTGGCTGTACAAAACGAGATCGAGGTATG---------AAAGTTACTGAGTC----TTTATTATACCCATTACTCGTAAA---------GTAAAAGGGTATACTAGATTCGTTGAAAAGTATGAAACAGGA-------------AGAAAAA------------------------------------------G------------C---------CGTCCGT----CTGTCCGTAAGAACGTCGAGATCTCAGGAACTATAAAAGCTAGAAGGTTAAAA-TT----------C----------------------------AGCGCAAGTTTGTTTACCCATGGTGCCACATTATACATTATTT
droSec2 scaffold_0:5122101-5122333 - CGTGCACTCTGCTGAGATCGAGGCTCTTGGCTGTACAAAACGAGATCGAGGTATG---------AAA--------GTG----TTTATTATACCCGTTACTCGTAAA---------GTAAAAGGGTATACTAGATTCGTTGAAAAGTATGAAACAGGA-------------AGAAAAA------------------------------------------G------------C---------CGTCCGT----CTGTCCGTAAGAACGTCGAGATCTCAGGAACTATAAAAGCTAGAAGGTTAAAA-TT----------C----------------------------AGCGCAAGTTTGTTTACCCATGGTGCCACATTA---------T
dm3 chr3L:12946835-12947012 - CGTGCACTCTGCTGAGATCGAGACACTTGGCTGTACAAAACGAGATCGAGGTATG---------AAAGTTACAGAGTC----TTTATTATACCCGTTACTCGTAGA---------GTAAAGGGG------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACGCCGAGATCTCAGGAACTATAAAAGCTAGAAAGTTAAAA-GT----------TGACATTTAGTTTC---------------------------TTTA---------------------ATACCT
droEre2 scaffold_4784:12956747-12956949 - TGTGCACTCTGCTGAGTTCGAGCTACTTGGCTGTACAAACCGAGATTGAGGTATG---------AAAGGTACTGAGTC----TTTATTTTAATT----------------------------TGCAAACTATTCAATTTGAGTAATTCTAAAAAATA-------------TTAAAAA------------------------------------------A------------C---------AATATGT----ACTTATTCAAAAACGTA---------------ATACAAGCCAAAAATATTTAAATTT---------TTGGTTGTG-------------------------AAG------------------CATATTATTTAATATTT
droYak3 2L:20256216-20256482 - CATTCGCTCT----------------------TTATTAAGCCAA-ATCACGTGAACCGAACATTAAAGTAGCCAACAA----ATTTTTATACCCGTTACTCGTAGA---------GTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTATCAAT------------------------------------------AGTCGAGTCGATCTGGCCATGTC--------CGTC---------TGTCTGT----CCGTCAGTATGAACGCTGAGATCTCAGGAACTACAAAAGCTAGAAAGTTGAGA-TC----------AGGCATACAAACTCCAGAGACATAGACGCAGCGCAAGTTTGTCGATTCATGTTGCCAC--------------
droEug1 scf7180000408887:3189-3371 - TGT-------------------------------AAAAAAAAAGAATGTGGTTGT---------AAAATTAGTATGC----TGTTTTTATACCCGTTACTCGTAGA---------GTAATAGGGAATACTAGATTCGTTGT-CCGTATGAA--------------------CACTAT------------------------------------------T------------C---------CGTCCGT----CCGTCCGTATGAACACTGAGATCTCAGGAACTTTAGCAGATTCAAAGTTGAGA-TG----------AAGCATGAATATTT--------------------------------------------------------TT
droBia1 scf7180000301646:3662-3867 - GTA--------------------------------------------------TG---------GTAGTGAT--AGC----TATTTTTATACCCGTTACTAGTAGA---------ACAAAAGGGTATACAAGATTCGTCGGAAAGTATGTAACAAAT-------------AGAAGGAAGCGTTCC-CGACC---------------------------------------CCATAAAGTATATTTATTC----TTGTCCATATGAACGCTAAGATCTCGGAAACTATAAGAGCAAGAACAGGCAGA----------------------------------------ACAGCGCAAGTTTGTTTCAGCGGGGTGCCAC--------------
droTak1 scf7180000415805:30289-30521 - ACT-----CTGTTGCCAGCG--------GCCTTTTCAAAACAAG-TTGAGGAATGGCAAAACATAAAAAATCCATGTG----GTAATTATACCCGTTACTCGTAGA---------GTAAAAGGGTATATTAGATTCGTGCAAAAGTATATAACAGGT-------------AGAAGGAAGCGTTTC-CGACC---------------------------------------CTA-----------------------------------------------------TAAACTATATATATTCTTGA-TC----------AGGATCACTAGCCGTGTCGATCTCGATCGAGCGCAAGTTTATTTTAGCCGAGTGCCAC--------------
droEle1 scf7180000490290:20140-20350 - GCT-----------------------------GTGCAA----------GGGTATA---------AAAAATA-----A----TATTTTTATATTTATAGCTCGTAGA---------GTAAAAGGGTATATTGTATTTATTGAAAAGTATGTAACAGCA-------------TCAAC-----------------------AGCCGAGTCAATCTAGCCTTAT------------C---------CGTCTGA----CTGTCCGTGTGAACGTCGAGATCTAGGAAACTACAAAAACTTGAGATTTGGGA-TT----------AGT---------------ATTTCTTACGCAGCGCAAGTTTATTTA---------------------------
droRho1 scf7180000769398:719-955 - GAT-------------------------------------------CGAAATTTG---------GTAAAAAC--GGCCTAATGTTTTTATACCCGTTACTCGTAGA---------GTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGCT-------------AGAAGGAAGCGTTTC-CGAC---------------------------------------CCTA---------TACCTGT----CTGTCCGTATGAACGCTGAGATCTCGGAAACTATAAAAGCTAGAAGATTGGCA-TT----------TTGCATGTAGATTTTATGAGTTCCTACGCAGCGCAAGTTTGTTTCAAAAAGGTGCCAC--------------
droFic1 scf7180000454086:257362-257514 - AAG----------------------------------------------------------------TTTTCTTAG-----TTCTTTTATACCCGTTACTCGTAGA---------GTCAAAGAA------AGATTGATTGAAACGAATCTATC----------------------------------------------------------AAGCTATGTCTATCTGTCTGTC---------TCATTGT----TCGTCTGTACAAACGTCGAGATCTCTGGAACTATATGATACAGAATATTGAGA-TT----------------------------------------------------------------------------------
droAna3 scaffold_12911:1217045-1217184 + -----------------------------------------------------------------------------------TTTTTATACCCGGTACTCTTAAA---------GTACAAGGATGTATTC-----A----TAAGCATCTA----A------------------------------------------AGCCAAGTCGACATAGCCA-------------------------TGTCCGT----CTGTTCGTATAAACACGAGGATCTCTGAGACTATAAGAGATAGAGCTATAAGA-TT----------TAACATAA----------------------------------------------------------------
droBip1 scf7180000396425:475609-475750 + A-------------------------------------------------------------------------------------TTATACCCGGTACTCGTAGG---------CTGAAAGGGTATTTAGTATTCGAGGGAGGGTATGCAACAGAG-------------GGGA---------------------------------TATATAGCCT-------------------------TGTCTGT----CTGTTGGTAAGAACTCGGGGATCTCAGAGACTAAAATAGGTAGAGCTGTAAGA-TT----------TGG---------------------------------------------------------------------
droPer2 scaffold_56:227681-227827 - AG--------------------------------------------------------------------------C----TATTTTTATACCTGGTACTCGAAGA---------GTACAAGGGTATATTCGATTTGTGGTGAAAGTGAATGGGGATGTGTGTAACTTCCCAGAACT------------------------------------------T------------C---------CGTCCGTCCGTCCGTCTTGTTTGACGGCTAGTTCTCAGAGACTATAAGAGCTAGA----------------------------------------------------------------------------------------------
droWil2 scf2_1100000004954:2513351-2513607 - TAC---------------------------------AATTAGAATTTAAGGTATA---------AGAA------AGGA----TTTATTTCACTTATTTCT---AGAATGCGC---GTGAAATGGTATACAAAAGTCGTCAAAATGTATGTAACAGGC-------------AAAAGGAAACTTTTTTCGACTTCTCTGATGCTGATCCCTCTTGATCA-------------------------TGTCCGT----CCGTCCGTATAAAAACCTAGATCTCAGAGACTATAAGAACCAGAGTCACCAAA-CT----------TAATACTTAGACTGGTGTAATTCTTATGGTGATCAAGTTTATTTTATTA-----------------------
droVir3 scaffold_13049:23306585-23306785 + TAA------------------------------------------------------------------------GCG----TTTATTATACCCTGAACCCATTAA--AAATGGGTAAAAAAGGTATATTGTATTTGTGTAAAATCCAAATGTAGGC-------------AGAAGGAAGCCGT-C----------------------------------------CGTCCGTC---------CGTCCGT----CCGTATGTATGAACGCAAGGATCTCAGAACCTATAAGAGCTAGAGATGTAGGTGCTCCTAGTGTCTTCG-------------------CATA---TTTCCG-----------------------ATTATCGATTCTTT
droMoj3 scaffold_3203:6374-6565 + CCA-----------------------------------------------------------------------AAT----TTTTTTTATACCCTGAACCCATTGA--AAATGGGAAATCAGGGTATAATGGTTTTGTGA-AAAGTATGTC--------------------------------------------------------------------------CGTCCGTC---------CGTCCGT----CCTTCCGTATGAGCAAAAGGATCTCAGAAGATATAAGAGCTAGAGAGCTGAAA-TT----------TGGCATGCATACTCGTGTATACCATAGGCATTCCAAGTTTGCTTTAT-----------------------TT
droGri2 scaffold_14624:22851-23020 - ACTG------------------------------------------------------------------------------AGTTTCTTACCCTGAACCCATTGA--AAAC---GTAAAATGGTATAATAGTTTTGTGCAGATTTATGTAACATGA-------------AGAAGGAAGCAAT------------------------AATTTAGTCATGCC--------CGTC---------TGTTCAT----CCGTCTATATGAACACACGGATCTCAGAGACTATAAGAGCTAAAGACTTCAAA-TT----------CGG---------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTGCACTCTGCTGAGATCGAGGCTCTTGGCTGTACAAAACGAGATCGAGGTATG---------AAAGTTACTGAGTC----TTTATTATACCCATTACTCGTAAA---------GTAAAAGGGTATACTAGATTCGTTGAAAAGTATGAAACAGGA-------------AGAAAAA------------------------------------------G------------C---------CGTCCGT----CTGTCCGTAAGAACGTCGAGATCTCAGGAACTATAAAAGCTAGAAGGTTAAAA-TT----------C----------------------------AGCGCAAGTTTGTTTACCCATGGTGCCACATTATACATTATTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................CGAGATCTCAGGAACTATAAAAGC..................................................................................................242029.5059000000054200480000000
........................................................................................................................AGGGTATACTAGATTCGTTGAAAAG......................................................................................................................................................................................................................................................25203.9078000000780000000000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTTA........................................................................................26141.6423000000443100101000
.....................................................................................................................................TTCGTTGAAAAGTATGAAACAGGA-------------AGA..........................................................................................................................................................................................................................2721.50300000011010000000
........................................................................................................................AGGGTATACTAGATTCGTTGAAAAGT.....................................................................................................................................................................................................................................................26201.3026000000000021050000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTT.........................................................................................25201.0020000000000000020000
......................................................................................................................................TCGTTGAAAAGTATGAAACAGGA-------------AGA..........................................................................................................................................................................................................................2621.00200000000020000000
.....................................................................................................................................TTCGTTGAAAAGTATGAAACAGGA-------------A............................................................................................................................................................................................................................2521.00200000001010000000
....................................................................TTACTGAGTC----TTTATTATAC...........................................................................................................................................................................................................................................................................................................2011.00100001000000000000
.....................................................................................................................AAAAGGGTATACTAGATTCGTTGAA.........................................................................................................................................................................................................................................................25200.8517000000017000000000
.........................................................................................................................................................................................................................................................................................AACTATAAAAGCTAGAAGGTTA........................................................................................22200.6012000001200000000000
.........................................................................................................................................................................................................................................................................................AACTATAAAAGCTAGAAGGTTAA.......................................................................................23200.6012000012000000000000
................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAG...............................................................................................24200.5511000000000011000000
.......................................................................................................................................CGTTGAAAAGTATGAAACAGGA-------------AGA..........................................................................................................................................................................................................................2520.50100000001000000000
......................................................................................................................................TCGTTGAAAAGTATGAAACAGGA-------------A............................................................................................................................................................................................................................2420.50100000000010000000
...................................................................................................................................................................................................................................................GTCCGT----CTGTCCGTAAGAACGTCGA.......................................................................................................................2520.50100000000001000000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTTAA.......................................................................................27140.43600000000000060000
.....................................................................................................................AAAAGGGTATACTAGA..................................................................................................................................................................................................................................................................16200.40800000000008000000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTTAT.......................................................................................27160.31500000000000041000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAAGGT..........................................................................................27200.30600000010300020000
...................................................................................................TCGTAAA---------GTAAAAGGGTATACTAG...................................................................................................................................................................................................................................................................24110.27300000000003000000
..............................................................................................................................................................................................................................................................TGTCCGTAAGAACGTCGAGATCTCA................................................................................................................2540.25100000000001000000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAG............................................................................................22200.25500000000050000000
..............................................................................................................................................................................................................................................................TGTCCGTAAGAACGTCGAGATCTCAGG..............................................................................................................2740.25100000000001000000
....................................................................................................................................................................................................................................................TCCGT----CTGTCCGTAAGAACGTCGAGA.....................................................................................................................2640.25100000000001000000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAGAAGGTTA........................................................................................27140.21300000000100020000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAAGG...........................................................................................26200.20400000000220000000
...............................................................................................................................................................................................................................................................GTCCGTAAGAACGTCGAGATCTCA................................................................................................................2450.20100000000000010000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAGAAGGT..........................................................................................25200.20400000000040000000
...............................................................................................................................................................................................................................................................GTCCGTAAGAACGTCGAGATCTCAGGA.............................................................................................................2750.20100000010000000000
................................................................................................................................................................................................................................................................TCCGTAAGAACGTCGAGATCTCAGGAA............................................................................................................2750.20100000000000010000
.....................................................................................................................................TTCGTTGAAAAGTATGAAACAGGG-------------.............................................................................................................................................................................................................................2460.17100000000100000000
.....................................................................................................................................TTCGTTGAAAAGTATGAAACAGGG-------------C............................................................................................................................................................................................................................2560.17100000000010000000
...................................................................................................TCGTAAA---------GTAAAAGGGT..........................................................................................................................................................................................................................................................................17190.16300000000003000000
...........................................................................................................................GTATACTAGATTCGTTG...........................................................................................................................................................................................................................................................17200.15300000000003000000
.....................................................................................................................................TTCGTTGAAAAGTATGAAA...............................................................................................................................................................................................................................................1980.13100000000001000000
..............................................................................................................................................................................................................................................................TGTCCGTAAGAACGTCGAGATCA..................................................................................................................2390.11100000000000010000
...................................................................................................TCGTAAA---------GTAAAAGGGTATACTAGAT.................................................................................................................................................................................................................................................................2690.11100000000001000000
...................................................................................................TCGTAAA---------GTAAAAGGGTATACTAGA..................................................................................................................................................................................................................................................................2590.11100010000000000000
..............................................................................................................................................................................................................................................................................GAGATCTCAGGAACTATAAAAGCTA................................................................................................25200.10200000000002000000
...................................................................................................................GTAAAAGGGTATACTAGATTCGTTGAAA........................................................................................................................................................................................................................................................28200.10200000002000000000
...........................................................................................................................................................................................................................................................................GTCGAGATCTCAGGAACT..........................................................................................................18200.10220000000000000000
..................................................................................................................................AGATTCGTTGAAAAG......................................................................................................................................................................................................................................................15200.10200000000002000000
..............................................................................................................................................................................................................................................................................GAGATCTCAGGAACTATAAAAGCT.................................................................................................24200.10200000000002000000
.............................................................................................................................................................................................................................................................................CGAGATCTCAGGAACTATAAA.....................................................................................................21200.10200000002000000000
...................................................................................................TCGTAAA---------GTAAAAGGGTATACTA....................................................................................................................................................................................................................................................................23120.08100000000001000000
......................................................................................................................................................................................................................................................................................AGGAACTATAAAAGCTAGAAGGTTAA.......................................................................................26140.07100000000010000000
..................................................................................................CTCGTAAA---------GTAAAAGGG...........................................................................................................................................................................................................................................................................17190.05100000000001000000
.........................................................................................................................................................................................................................................................................................AACTATAAAAGCTAGAAGGT..........................................................................................20200.05100000000001000000
............................................................................................................................TATACTAGATTCGTTGAAAAGTAT...................................................................................................................................................................................................................................................24200.05100000000100000000
............................................................................................................................................................................................................................................................................TCGAGATCTCAGGAACTATAAAAGC..................................................................................................25200.05100000000100000000
................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAGAAG............................................................................................27200.05100000000001000000
.......................................................................................................................AAGGGTATACTAGATTCGTTG...........................................................................................................................................................................................................................................................21200.05100000000000010000
.......................................................................................................AAA---------GTAAAAGGGTATACTAGA..................................................................................................................................................................................................................................................................21200.05100000000010000000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAGA..............................................................................................21200.05100000000010000000
..........................................................................................................................................................................................................................................................................CGTCGAGATCTCAGG..............................................................................................................15200.05100000000001000000
.........................................................................................................................GGGTATACTAGATTCGTTGAAAAGT.....................................................................................................................................................................................................................................................25200.05100000001000000000
.....................................................................................................................AAAAGGGTATACTAGATTCGTTGAAAAGTA....................................................................................................................................................................................................................................................30200.05100000001000000000
..........................................................................................................................................................................................................................................................................................ACTATAAAAGCTAGAAGGT..........................................................................................19200.05100000000001000000
......................................................................................................TAAA---------GTAAAAGGGTA.........................................................................................................................................................................................................................................................................15200.05100000000001000000
...................................................................................................................GTAAAAGGGTATACTAGATTCGTT............................................................................................................................................................................................................................................................24200.05100000000000001000
.......................................................................................................................AAGGGTATACTAGATTCGTTGAAAAGTA....................................................................................................................................................................................................................................................28200.05100000010000000000
......................................................................................................................AAAGGGTATACTAGATTCGTTGAAAA.......................................................................................................................................................................................................................................................26200.05100000000001000000
...................................................................................................................GTAAAAGGGTATACTAGATTCGTTGAAAA.......................................................................................................................................................................................................................................................29200.05100000001000000000
............................................................................................................................................................................................................................................................................................TATAAAAGCTAGAAGGTTA........................................................................................19200.05100000000001000000
....................................................................................................................TAAAAGGGTATACTAGATTCGTTGAAAAC......................................................................................................................................................................................................................................................29200.05100000010000000000
........................................................................................................................................................................................................................................................................................GAACTATAAAAGCTAG...............................................................................................16200.05100000000001000000
.............................................................................................................................................................................................................................................................................CGAGATCTCAGGAACTATAAAAGCTAGA..............................................................................................28200.05100000000000010000
.......................................................................................................................................................................................................................................................................GAACGTCGAGATCTCAGGAAC...........................................................................................................21200.05101000000000000000
........................................................................................................................AGGGTATACTAGATTCGTTGAAA........................................................................................................................................................................................................................................................23200.05100000000001000000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTA................................................................................................19200.05100000000100000000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAGAAGG...........................................................................................24200.05100000000001000000
........................................................................................................................AGGGTATACTAGATTCGTTGA..........................................................................................................................................................................................................................................................21200.05100000010000000000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCT.................................................................................................17200.05100000000010000000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAA.............................................................................................24200.05100000000100000000
droSec2
CGTGCACTCTGCTGAGATCGAGGCTCTTGGCTGTACAAAACGAGATCGAGGTATG---------AAA--------GTG----TTTATTATACCCGTTACTCGTAAA---------GTAAAAGGGTATACTAGATTCGTTGAAAAGTATGAAACAGGA-------------AGAAAAA------------------------------------------G------------C---------CGTCCGT----CTGTCCGTAAGAACGTCGAGATCTCAGGAACTATAAAAGCTAGAAGGTTAAAA-TT----------C----------------------------AGCGCAAGTTTGTTTACCCATGGTGCCACATTA---------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................AAAAGTATGAAACAGGA-------------AGAA.........................................................................................................................................................................................................................2120.5011000
.....................................................................................................................................TTCGTTGAAAAGTATGAAACAGGA-------------.............................................................................................................................................................................................................................2430.3310010
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAGGTT.........................................................................................25200.1533000
.....................................................................................................................AAAAGGGTATACTAGATTCGTTGA..........................................................................................................................................................................................................................................................24200.0510100
....................................................................................................................TAAAAGGGTATACTAGATTCGTTGAA.........................................................................................................................................................................................................................................................26200.0510100
dm3
CGTGCACTCTGCTGAGATCGAGACACTTGGCTGTACAAAACGAGATCGAGGTATG---------AAAGTTACAGAGTC----TTTATTATACCCGTTACTCGTAGA---------GTAAAGGGG------------------------------------------------------------------------------------------------------------------------------------TCCGTATGAACGCCGAGATCTCAGGAACTATAAAAGCTAGAAAGTTAAAA-GT----------TGACATTTAGTTTC---------------------------TTTA---------------------ATACCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAAGT..........................................................................................24113.003300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110725220000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TATGAACGCCGAGATCTCAGGAAC...........................................................................................................2451.6080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000003000000000000000000000000020000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AACTATAAAAGCTAGAAAGTTAAA......................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GGCTGTACAAAACGAGATCGAG.....................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TACTCGTAGA---------GTAAAGGGG------------------------------------------------------------------------------------------------------------------------------------TC.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AACTATAAAAGCTAGAAAGTTAAAA-....................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GAACTATAAAAGCTAGAAAGT..........................................................................................21160.941500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAGA..............................................................................................21200.75150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000006000000000000000000010000000000000000000000003000000000000000000000030000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................AGATCTCAGGAACTATAAAAGC..................................................................................................22200.701400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AACTATAAAAGCTAGAAAGTTAAAA-T...................................................................................2660.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CCGAGATCTCAGGAACTATAAAAGC..................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAGAAAGTTAA.......................................................................................2820.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GCCGAGATCTCAGGAACTATAAAAG...................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CTCAGGAACTATAAAAGCTAG...............................................................................................21200.4590000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000060000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAAGTT.........................................................................................2590.4440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000020000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TCCGTATGAACGCCGAGATCTCAGG..............................................................................................................2570.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CGAGATCTCAGGAACTATAAAAGC..................................................................................................24200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TGAACGCCGAGATCTCAGGAAC...........................................................................................................2250.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TCCGTATGAACGCCGAGATCTCAGGAAC...........................................................................................................2850.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CGTATGAACGCCGAGATCTCAGGAA............................................................................................................2550.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CGTATGAACGCCGAGATCTCAGGAAC...........................................................................................................2650.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTA................................................................................................21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000020000000
.........................................................................................................................................................................................................................................................................ACGCCGAGATCTCAGGAACTATAAAA....................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAAGTTA........................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................TTACTCGTAGA---------GTAAAGGGG------------------------------------------------------------------------------------------------------------------------------------T......................................................................................................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................................................................................................................................................................................................................TGAACGCCGAGATCTCAGGAACTATAA......................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................TTTATTATACCCGTTACTCGT................................................................................................................................................................................................................................................................................................2170.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TATGAACGCCGAGATCTCAGGA.............................................................................................................2270.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TGAACGCCGAGATCTCAGGAACTATA.......................................................................................................2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCT.................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000003000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAGAA.............................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000200000
.........................................................................................................................................................................................................................................................................................AACTATAAAAGCTAGAAAGT..........................................................................................20200.2550000000000000000000000000000000000010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TATGAACGCCGAGATCTCAGGAACT..........................................................................................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAAAG...........................................................................................26100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GTATGAACGCCGAGATCTCAGGAAC...........................................................................................................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAGAA.............................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.................................................................................................................................................................................................................................................................CCGTATGAACGCCGAGATCTCAGGAAC...........................................................................................................2750.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................ACGCCGAGATCTCAGGAACTA.........................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TGAACGCCGAGATCTCAGGAACTAT........................................................................................................2550.2010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CCCGTTACTCGTAGA---------GTAAA...............................................................................................................................................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAA.............................................................................................24200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GCCGAGATCTCAGGAACTAT........................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAGAAAGT..........................................................................................25100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TATACCCGTTACTCGTAGA---------GT..................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................TTTATTATACCCGTTACTCGTA...............................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AACTATAAAAGCTAGAAAGTT.........................................................................................21190.1630000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CGAGATCTCAGGAACTATAAAAGCTAG...............................................................................................27200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.............................................................................................................................................................................................................................................................................CGAGATCTCAGGAACTATAAAAGCTA................................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000
....................................................................................TATTATACCCGTTACTCGTAGA---------G...................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................TTATTATACCCGTTACTCGTA...............................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTATACCCGTTACTCGTAGA---------GT..................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................CGTTACTCGTAGA---------GTAAAGGG............................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TCTGCTGAGATCGAGATC..............................................................................................................................................................................................................................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ATGAACGCCGAGATCTCAGGA.............................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAGAAA............................................................................................2780.1310000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GAACGCCGAGATCTCAGG..............................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GTTACTCGTAGA---------GTAAAGGG............................................................................................................................................................................................................................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TGAACGCCGAGATCTCAGG..............................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAAAGT..........................................................................................2790.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TCCGTATGAACGCCGAGAT....................................................................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATCTCAGGAACTATAAAAGCTAGAAA............................................................................................26100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTATACCCGTTACTCGTAGA---------G...................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATCTCAGGAACTATAAAAGCTA................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................CTCAGGAACTATAAAAGCTAGAAAGT..........................................................................................26100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GAGATCTCAGGAACTATAAAAGCTAGAA.............................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATCTCAGGAACTATAAAAGCTAGAAAG...........................................................................................27100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAGA..............................................................................................25200.1020000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................AGATCTCAGGAACTATAAAAG...................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................TTATTATACCCGTTACTCGTAGA---------GT..................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAGAAA............................................................................................25100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CGAGATCTCAGGAACTATAAAAG...................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TCCGTATGAACGCCGAGATCTCATT..............................................................................................................25120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAGAAAG...........................................................................................23130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TATGAACGCCGAGATCTCAT...............................................................................................................20130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GGAACTATAAAAGCTAGAAAG...........................................................................................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................GAACTATAAAAGCTAGAAAG...........................................................................................20180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTA................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................TATTATACCCGTTACTCGTAGA---------GTA.................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................TACCCGTTACTCGTAGA---------GTAA................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAG...............................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................CGAGATCTCAGGAACTATAAAAGCTAGAA.............................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGC..................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAG...............................................................................................20200.0510000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CTCAGGAACTATAAAAGCTAGAA.............................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.................................................................................................................................................................................................................................................................................ATCTCAGGAACTATAAAAGCTAGA..............................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................................................................................................................................................................................GAGATCTCAGGAACTATAAAAGCTA................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATCTCAGGAACTATAAAAGCT.................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GAGATCTCAGGAACTATAAAAGCTAG...............................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AACTATAAAAGCTAGAAA............................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droEre2
TGTGCACTCTGCTGAGTTCGAGCTACTTGGCTGTACAAACCGAGATTGAGGTATG---------AAAGGTACTGAGTC----TTTATTTTAATT----------------------------TGCAAACTATTCAATTTGAGTAATTCTAAAAAATA-------------TTAAAAA------------------------------------------A------------C---------AATATGT----ACTTATTCAAAAACGTA---------------ATACAAGCCAAAAATATTTAAATTT---------TTGGTTGTG-------------------------AAG------------------CATATTATTTAATATTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CATTCGCTCT----------------------TTATTAAGCCAA-ATCACGTGAACCGAACATTAAAGTAGCCAACAA----ATTTTTATACCCGTTACTCGTAGA---------GTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTATCAAT------------------------------------------AGTCGAGTCGATCTGGCCATGTC--------CGTC---------TGTCTGT----CCGTCAGTATGAACGCTGAGATCTCAGGAACTACAAAAGCTAGAAAGTTGAGA-TC----------AGGCATACAAACTCCAGAGACATAGACGCAGCGCAAGTTTGTCGATTCATGTTGCCAC--------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................TACAAAAGCTAGAAAGTTGAGA-TC----------........................................................................24200.05100100000000
....................................................................................................................................................................................................................................................................................................................................TACAAACTCCAGAGACATAGACGCAGC........................................27200.05100100000000
........................................................................................................................................................................................................................................................................................GAACTACAAAAGCTAGAAAGTTGAG......................................................................................25200.05100010000000
.........................................................................................................................................................................................................................................................................................AACTACAAAAGCTAGAAAGTTGAGA-TC----------........................................................................27200.05100100000000
...........................................................................................................................................................................................................................................................................................CTACAAAAGCTAGAAAGTTGAGA-TC----------A.......................................................................26200.05101000000000
.......................................................................................................................................................TCAAT------------------------------------------AGTCGAGTCGATCTGGCCAT.............................................................................................................................................................................25200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................CAAGTTTGTCGATTCATGTTGCCA...............24200.05101000000000
...............................................................................................................................................................................................................................................................................................AAAAGCTAGAAAGTTGAGA-TC----------A.......................................................................22200.05100000010000
droEug1
TGT-------------------------------AAAAAAAAAGAATGTGGTTGT---------AAAATTAGTATGC----TGTTTTTATACCCGTTACTCGTAGA---------GTAATAGGGAATACTAGATTCGTTGT-CCGTATGAA--------------------CACTAT------------------------------------------T------------C---------CGTCCGT----CCGTCCGTATGAACACTGAGATCTCAGGAACTTTAGCAGATTCAAAGTTGAGA-TG----------AAGCATGAATATTT--------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droBia1
GTA--------------------------------------------------TG---------GTAGTGAT--AGC----TATTTTTATACCCGTTACTAGTAGA---------ACAAAAGGGTATACAAGATTCGTCGGAAAGTATGTAACAAAT-------------AGAAGGAAGCGTTCC-CGACC---------------------------------------CCATAAAGTATATTTATTC----TTGTCCATATGAACGCTAAGATCTCGGAAACTATAAGAGCAAGAACAGGCAGA----------------------------------------ACAGCGCAAGTTTGTTTCAGCGGGGTGCCAC--------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACT-----CTGTTGCCAGCG--------GCCTTTTCAAAACAAG-TTGAGGAATGGCAAAACATAAAAAATCCATGTG----GTAATTATACCCGTTACTCGTAGA---------GTAAAAGGGTATATTAGATTCGTGCAAAAGTATATAACAGGT-------------AGAAGGAAGCGTTTC-CGACC---------------------------------------CTA-----------------------------------------------------TAAACTATATATATTCTTGA-TC----------AGGATCACTAGCCGTGTCGATCTCGATCGAGCGCAAGTTTATTTTAGCCGAGTGCCAC--------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCT-----------------------------GTGCAA----------GGGTATA---------AAAAATA-----A----TATTTTTATATTTATAGCTCGTAGA---------GTAAAAGGGTATATTGTATTTATTGAAAAGTATGTAACAGCA-------------TCAAC-----------------------AGCCGAGTCAATCTAGCCTTAT------------C---------CGTCTGA----CTGTCCGTGTGAACGTCGAGATCTAGGAAACTACAAAAACTTGAGATTTGGGA-TT----------AGT---------------ATTTCTTACGCAGCGCAAGTTTATTTA---------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GAT-------------------------------------------CGAAATTTG---------GTAAAAAC--GGCCTAATGTTTTTATACCCGTTACTCGTAGA---------GTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGCT-------------AGAAGGAAGCGTTTC-CGAC---------------------------------------CCTA---------TACCTGT----CTGTCCGTATGAACGCTGAGATCTCGGAAACTATAAAAGCTAGAAGATTGGCA-TT----------TTGCATGTAGATTTTATGAGTTCCTACGCAGCGCAAGTTTGTTTCAAAAAGGTGCCAC--------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAG----------------------------------------------------------------TTTTCTTAG-----TTCTTTTATACCCGTTACTCGTAGA---------GTCAAAGAA------AGATTGATTGAAACGAATCTATC----------------------------------------------------------AAGCTATGTCTATCTGTCTGTC---------TCATTGT----TCGTCTGTACAAACGTCGAGATCTCTGGAACTATATGATACAGAATATTGAGA-TT----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
-----------------------------------------------------------------------------------TTTTTATACCCGGTACTCTTAAA---------GTACAAGGATGTATTC-----A----TAAGCATCTA----A------------------------------------------AGCCAAGTCGACATAGCCA-------------------------TGTCCGT----CTGTTCGTATAAACACGAGGATCTCTGAGACTATAAGAGATAGAGCTATAAGA-TT----------TAACATAA----------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
A-------------------------------------------------------------------------------------TTATACCCGGTACTCGTAGG---------CTGAAAGGGTATTTAGTATTCGAGGGAGGGTATGCAACAGAG-------------GGGA---------------------------------TATATAGCCT-------------------------TGTCTGT----CTGTTGGTAAGAACTCGGGGATCTCAGAGACTAAAATAGGTAGAGCTGTAAGA-TT----------TGG---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droPer2
AG--------------------------------------------------------------------------C----TATTTTTATACCTGGTACTCGAAGA---------GTACAAGGGTATATTCGATTTGTGGTGAAAGTGAATGGGGATGTGTGTAACTTCCCAGAACT------------------------------------------T------------C---------CGTCCGTCCGTCCGTCTTGTTTGACGGCTAGTTCTCAGAGACTATAAGAGCTAGA----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................TGAATGGGGATGTGTGTAA..................................................................................................................................................................................................................................1911.001010000
.........................................................................................................................GGGTATATTCGATTTGTGGT..........................................................................................................................................................................................................................................................20200.051000001
droWil2
TAC---------------------------------AATTAGAATTTAAGGTATA---------AGAA------AGGA----TTTATTTCACTTATTTCT---AGAATGCGC---GTGAAATGGTATACAAAAGTCGTCAAAATGTATGTAACAGGC-------------AAAAGGAAACTTTTTTCGACTTCTCTGATGCTGATCCCTCTTGATCA-------------------------TGTCCGT----CCGTCCGTATAAAAACCTAGATCTCAGAGACTATAAGAACCAGAGTCACCAAA-CT----------TAATACTTAGACTGGTGTAATTCTTATGGTGATCAAGTTTATTTTATTA-----------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................AAGTCGTCAAAATGTATGTAACAGG...........................................................................................................................................................................................................................................25160.06101000
.......................................................................................................................................CGTCAAAATGTATGTAACAGG...........................................................................................................................................................................................................................................21200.05101000
droVir3
TAA------------------------------------------------------------------------GCG----TTTATTATACCCTGAACCCATTAA--AAATGGGTAAAAAAGGTATATTGTATTTGTGTAAAATCCAAATGTAGGC-------------AGAAGGAAGCCGT-C----------------------------------------CGTCCGTC---------CGTCCGT----CCGTATGTATGAACGCAAGGATCTCAGAACCTATAAGAGCTAGAGATGTAGGTGCTCCTAGTGTCTTCG-------------------CATA---TTTCCG-----------------------ATTATCGATTCTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................TATGTATGAACGCAAGGATCTCAGAACC...........................................................................................................28200.70140000000000000000000000000001400000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TATAAGAGCTAGAGATGTAGGTGC...................................................................................2460.503000000011000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................CTATAAGAGCTAGAGATGTAGGTGC...................................................................................2560.503000000030000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GAACCTATAAGAGCTAGAGATGTAGGT.....................................................................................2780.383000000010000000000000000000000000020000000000000000000000000000
......................................................................................................TTAA--AAATGGGTAAAAAAGGTATATTG....................................................................................................................................................................................................................................................................2730.331000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AGAGCTAGAGATGTAGGTGCTCCTAG.............................................................................2660.332000000001000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AAGAGCTAGAGATGTAGGTGCTCCTAG.............................................................................2760.332000000002000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TATGTATGAACGCAAGGATCTCAGA..............................................................................................................25200.306000000000000000000000000060000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AAGAGCTAGAGATGTAGGTGC...................................................................................2170.292000000002000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TAAGAGCTAGAGATGTAGGTGC...................................................................................2270.292000000010000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GAACCTATAAGAGCTAGAGATGTAGG......................................................................................2680.252000000000020000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GAACCTATAAGAGCTAGAGATGTAG.......................................................................................2590.222000000000000000000000000000000000020000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ACCTATAAGAGCTAGAGATGTAGGTGC...................................................................................2760.171000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AGAGCTAGAGATGTAGGTGCTCCTA..............................................................................2560.171000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATCTCAGAACCTATAAGAGCT.................................................................................................21200.153102000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TAAGAGCTAGAGATGTAGGTGCT..................................................................................2370.141000000010000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TAAGAGCTAGAGATGTAGGTG....................................................................................2170.141000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TAAGAGCTAGAGATGTAGGTGCTCCT...............................................................................2670.141000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TAAGAGCTAGAGATGTAGGTGCAT.................................................................................2470.141000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TAAGAGCTAGAGATGTAGGTGCTC.................................................................................2470.141000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TAAGAGCTAGAGATGTAGGTGCTCC................................................................................2570.141000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AGAGCTAGAGATGTAGGTGCTT.................................................................................2280.131000000010000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ACCTATAAGAGCTAGAGATGTAG.......................................................................................2390.111000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TCCGT----CCGTATGTATGAACG...........................................................................................................................20200.102000110000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AACGCAAGGATCTCAGAACCTATAAGA....................................................................................................27200.102000000000000000000000000000001001000000000000000000000000000000
.....................................................................................................................................................................................................................................................CCGT----CCGTATGTATGAACGCAAGGATC...................................................................................................................27200.102000000000000000000000000020000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCTCAGAACCTATAAGAGCTA................................................................................................21200.102000020000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AAGGATCTCAGAACCTATAAGAGCT.................................................................................................25200.102000000000100000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AGATGTAGGTGCTCCTAGTGT..........................................................................21200.102000000000010000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GAACCTATAAGAGCTAGAGATG..........................................................................................22120.081000000001000000000000000000000000000000000000000000000000000000
......................................................................................................TTAA--AAATGGGTAAAAAAA............................................................................................................................................................................................................................................................................19190.051000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATCTCAGAACCTATAAGAGCTAGAG.............................................................................................25200.051000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................GATCTCAGAACCTATAAGAGCTAGAGA............................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CGTCCGT----CCGTATGTATGAACGCAAGG......................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................TATGTATGAACGCAAGGATCTCAG...............................................................................................................24200.051000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................ATGTAGGTGCTCCTAGTGTC.........................................................................20200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................GTATGTATGAACGCAAGGATCTCA................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATCTCAGAACCTATAAGAGC..................................................................................................20200.051000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GCAAGGATCTCAGAACCTATAAGAGC..................................................................................................26200.051000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................TATGTATGAACGCAAGGATCTCA................................................................................................................23200.051000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TCAGAACCTATAAGAGCTAGAGAT...........................................................................................24200.051000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................TCAGAACCTATAAGAGCT.................................................................................................18200.051000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................GTATGAACGCAAGGATCTCAG...............................................................................................................21200.051000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGTATGAACGCAAGGATCTCAGAAC............................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CGTCCGT----CCGTATGTATGAAC............................................................................................................................21200.051000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................CGTATGTATGAACGCAAGGA.....................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TCAGAACCTATAAGAGCTA................................................................................................19200.051000000100000000000000000000000000000000000000000000000000000000
droMoj3
CCA-----------------------------------------------------------------------AAT----TTTTTTTATACCCTGAACCCATTGA--AAATGGGAAATCAGGGTATAATGGTTTTGTGA-AAAGTATGTC--------------------------------------------------------------------------CGTCCGTC---------CGTCCGT----CCTTCCGTATGAGCAAAAGGATCTCAGAAGATATAAGAGCTAGAGAGCTGAAA-TT----------TGGCATGCATACTCGTGTATACCATAGGCATTCCAAGTTTGCTTTAT-----------------------TTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................ATGCATACTCGTGTATACCATAGGCATT........................................2811.001000010
.......................................................................................................................................................................................................................................................................................GAAGATATAAGAGCTAGAGAGCT.........................................................................................23200.102000020
.................................................................................................................................................................................................................................................................................................GAGCTAGAGAGCTGAAA-TT----------TGGCATGC................................................................27200.102200000
.....................................................................................................ATTGA--AAATGGGAAATCAGGGTATA.......................................................................................................................................................................................................................................................................25200.051000010
...............................................................................................................................AATGGTTTTGTGA-AAAGTATGT.................................................................................................................................................................................................................................................22200.051000001
...................................................................................................................................................................................................................................................................................................................................ATGCATACTCGTGTATACCATAGG............................................24200.051100000
............................................................................T----TTTTTTTATACCCTGAACCCAT................................................................................................................................................................................................................................................................................................23200.051100000
.........................................................................................................................................................................................................................................................................................AGATATAAGAGCTAGAGAGCTGAAA-....................................................................................25200.051100000
....................................................................................................................................................................................................................................................................................................................T----------TGGCATGCATACTCGTGTA.....................................................20200.051100000
......................................................................................................TTGA--AAATGGGAAATCAGGGT..........................................................................................................................................................................................................................................................................21200.051000100
..........................................................................................................................................................................................................................................................................................GATATAAGAGCTAGAGAG...........................................................................................18200.051100000
...................................................................................................................................................................................................................................................................................................................TT----------TGGCATGCATACTCGTGTA.....................................................21200.051010000
.................................................................................TTTTTTTATACCCTGAACCCATT...............................................................................................................................................................................................................................................................................................23200.051000010
................................................................................................................................................................................................................................................................................................................AA-TT----------TGGCATGCATACTCGTG.......................................................21200.051000001
droGri2
ACTG------------------------------------------------------------------------------AGTTTCTTACCCTGAACCCATTGA--AAAC---GTAAAATGGTATAATAGTTTTGTGCAGATTTATGTAACATGA-------------AGAAGGAAGCAAT------------------------AATTTAGTCATGCC--------CGTC---------TGTTCAT----CCGTCTATATGAACACACGGATCTCAGAGACTATAAGAGCTAAAGACTTCAAA-TT----------CGG---------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:29 AM