dsi_6426

exon [2r_7131116_7131344_-]; five_prime_UTR [2r_7131116_7131344_-]; intron [2r_7129338_7131115_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AACACAACCCGGAAACAGTTTACACCGAATTGCTTTAATTCGACTAGAAGGTTTGTTTTCGTGTCTTTTATTCATCTCCCTACCACAACAAGCTGAAGGTCGGAAAAGCGTAAACAATGCGCAATCGAAAGCAACGGGTTTATAATCCGCTAAGGTTGCATTTTTGCGGCTTACGTGGACCGCTTTTGGCGATCTTTCCCCTCGACTTTATCTCGGTCCCACTTATGTGACCTAAATTCGGGCACATGTT ************************************************************************************...((.(((....((((....(((((.....)))))..))))......))).)).......*****************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	M023 head	M024 male body	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
..............................TGCTTTAATTCGACTAGAA.........................................................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0	0	0	0	0
.............................TTGCTTTAATTCGACTAGAAGG.......................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..........................................................................................................................AATCGAAAGCAACGGGTTTATAATC.......................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...............................................................................................................AAACAATGCGCAATCGAAA........................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................CAATCGAAAGCAACGGG................................................................................................................	17	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................CGGTATTTCCCCTCGACTTTATCG.....................................	24	3	1	1.00	1	0	0	0	0	0	1	0	0	0
......................................................................................AACAAGCTGAAGGTCGGAAAAGC.............................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0
............................................................................TCCCTACCACAACAAGCTGAAGGTCGGA..................................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...................................................................................................................AATGCGCAATCGAAAGCAACGG.................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................TAATTCGACTCGAAGGTTTGTTTTC..............................................................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0
.................................TTTAATTCGACTAGAAGC.......................................................................................................................................................................................................	18	1	1	1.00	1	0	0	0	0	1	0	0	0	0
.....AACCCGGAAACAGTTTACACCGA..............................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGCGGCTTACGTGGACCG....................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.....................................ATTCGACTAGAAGGTTTGTTTTCGT............................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GACTTTATCTCGGTG................................	15	1	11	0.18	2	0	0	0	0	0	0	2	0	0
........................................TGACTAGTAGGTTTGT..................................................................................................................................................................................................	16	2	20	0.10	2	0	0	0	0	0	0	2	0	0
...........................................................................................................................................TTAGAACCCGCTAAGG...............................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................AACTCGACTTGATCTCGGT.................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................TAGGCTGCATTTTTGCG..................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	1	0

TTGTGTTGGGCCTTTGTCAAATGTGGCTTAACGAAATTAAGCTGATCTTCCAAACAAAAGCACAGAAAATAAGTAGAGGGATGGTGTTGTTCGACTTCCAGCCTTTTCGCATTTGTTACGCGTTAGCTTTCGTTGCCCAAATATTAGGCGATTCCAACGTAAAAACGCCGAATGCACCTGGCGAAAACCGCTAGAAAGGGGAGCTGAAATAGAGCCAGGGTGAATACACTGGATTTAAGCCCGTGTACAA *****************************************************************************************************...((.(((....((((....(((((.....)))))..))))......))).)).......************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
..............................................................................................CTTCCAGCCTTTTCGCATTTGTT.....................................................................................................................................	23	0	1	1.00	1	0	1	0	0
.......................................................................................TGTTCGACTTCCAGCCTTTTC..............................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.................CCAATGCGGCTTAACGAAA......................................................................................................................................................................................................................	19	2	1	1.00	1	1	0	0	0
......................................................................AAGTAGAGGGATGGTGTTGT................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0
.TGTGTTCGGTCTTCGTCAAAT....................................................................................................................................................................................................................................	21	3	5	0.20	1	0	0	1	0
..........................................................................................................................................................................ACTGCACCTGGCGAAC................................................................	16	2	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:7130916-7131165 -	dsi_6426	AACAC--AACC--------C-----------GGAAACAGTT-TACA----CCGAATTGC-TTTAATTCGAC-T---AGAAGGTTTGTTTTCGTGTCT--------TTTATT------------CATCTCCCTAC-CACAACAAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------GCG-C-------------------AATCGAAA-G----CAACGGGTTTAT-AATCCGCTAAGGTTGCATTTTTGCGGCTTACGTG---------GACCGCTT------------TT------GGCGATCTTT-CCCC-------------TCGACTTTATCTCGGT-CCCAC----T---TA----------------TGTGACCTAAATTCGGGCACATGTT---
droSec2	scaffold_1:3974203-3974452 -		AACAC--AACC--------C-----------GGAAACAGTT-TACA----CCGAATTGC-TTTAATTCGAC-T---AGAAGGTTTGTTTTTGTGTCT--------TTTATT------------CATCTCCCTAC-CACAACAAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------GCG-C-------------------AATCGAAA-G----CAACGGGTTTAT-AATCCGCTAAGGTTGCATTTTTGCGGCTTACGTG---------GATCGC------------TTTT------AGCGATCTTT-CCCC-------------TCGACTTTATCTCGGT-CCCAC----T---TA----------------TGTGACCCAAATTCGGGCACATGTT---
dm3	chr2R:6362561-6362809 -		AACAC--AACC--------C-----------GGAAACAGTT-TACA----CCGAATTGC-TTTAATTCGAC-T---AGAAGGTTTGTTTTCGTGTCT--------TTTATT------------CATCTCC-TAC-CACAACAAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------GCG-C-------------------AATCGAAA-G----CAACGGGTTTAT-AATCCGCAATGGTTGCATTTTTGCGGCTTACGTG---------GACCGCTT------------TT------TGCGATCTTT-CCCC-------------TCGTATTTATCTCGCT-CCCAC----T---TA----------------TGTGACCCAAATTCGGGCACATGTT---
droEre2	scaffold_4845:19389392-19389657 +		AATAC--AACC--------C-----------GGAAACAGTT-TACA----CCGAATTGC-ATTAATTCGAC-T---AGAAGGTTTGTTT--GTCTCT--------TTTATT------------TATCTGC-TATCCACA--AAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------GCG-C-------------------CATCGCAA-G----CAATGGGTTTAT-AATCCCCAAAGGTTGCATTTTTGCGGCTTACGTT---------------------TTA--TTTTT-CGCCATGCGATCTATTCCCC-------------TAGTCTTTATCTCGAT-CCCAC----T---TATGTATGTATGTACATATGTGACCCA-ATTGAGGCACATGTTT--
droYak3	2R:2777281-2777543 +		AACAA--AACC--------C-----------GGAAACAGTT-TACATTTTGCGAATTGC-TTTAATTCGAC-T---AGAAGGTTTGTTT--TCCTCT--------TTTATT------------TATCTCC-TAC-CAC---CAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------CCT-C-------------------AGCGCAAA-G----CAATGGGTTTAT-AATCCGCAAAGGTTGCATTTTTGCGGCTTACGTG---------GACCAGTTT---TTGTATTTTT-CGCTTGGCGATCTTTTCCCC-------------CGGTCTTTATCTCGAT-CCCAC----T---TA----------------AGTGACCCAAATTCTGGCACATGTT---
droEug1	scf7180000409672:4653665-4653939 +		AATAC--AGCG--------CG--AT---AGAGGAAATAGTTTTAAA----TCGAATTAT-TTGAATTCGTT-A---AGAAGGTTTGTTT--GTGTCTTTTTGTTATTTATT------------TATTTCT-TAA-CCCGA-GAACTGAAGGTC---------GGAAAAGCGTAAACAAC------GCG-A-------------------AAATAAAA-G----CAATACT------TTTCCGCAAAGGTTGCATTTCTGCGGCTTACGTGTAGGTTTT-CCTCCC-T----TT--------------GCTGATCTTT-TACCCCC------CTTCTTGTCTTTATCTCACTTTTCAC----TT--TG----------------AGTGACCCAAATTCTGGCACATGTTTTT
droBia1	scf7180000301506:59994-60260 -		AACAC--AACG--------CGGCGT---ACAGGAAACCGTT-TATA----CCGAATTAT-TTTAATTCGCC-C---AGAAGGTTTGTTT--GTGTTTT------TCTCATT------------TACTTCT-TAG-CCC---CAGCTGAAGGTC---------GGAAAAGCGTAAACAAC------GCG-C-------------------AAAATAACAG----AGGCGGT----T-CTTCTGCAAAGGTTGCATTTTTGCGGCTTACGTA---------GGCACCTTC---TTG--TTTTT-CACGTTCTGATCTTT-CCCC--C------CTTGGCGG-CTTATCTCGTT-GCCAC----T---TG----------------TGTGACCCAAATTCTGGCACATGTT---
droTak1	scf7180000415683:80824-81085 +		AATAC--AACG--------CG--GT---AGAGGAAACAGTT-TATA----CCGAATTAT-TTTAATTCGCC-G---AGAAGGTTTGTTT--GTGTTT--------CTTATG------------TATTTCT-TGT-CCC---GACCTTCAGGCC------AGCGGAAAAGCGTAAACAAC------GCG-A-------------------AAAAGAAAAT----CAATGGT-TTCTGTTTCTGCAGAGGTTGCATTTCTGCGGCTTACGTA---------GCCCCCTT-----TG---TTTT-CACGTTCTGATCTTT-CCCC--------------TGTCTTTATCTCGGT-CTCAC----T---TT----------------AGTGACCCAAATTCTGGCACATGTT---
droEle1	scf7180000491349:1092789-1093050 +		AATAC--AACG--------CG--GT---AGAGGAAACAGTT-TATG----CCGAATTAT-TTTAATTCGCC-G---AGAAGGTTTGTTT--GTGTTT--------CGCATT------------TATTTCT-TAA-CC----CAGTTGAAGGTC---------GGAAAAGCGTAAACAACAACAACGCG-A-------------------AAACAAAT-G----CAATGG-------TTTCAGCAAAGGTTGCATTTTTGTGGCTTACGTA---------GCCACCTTT---TTG--TTTTTACCCATTCTGATCGTT-CCCC-------------TTGTCTTCAACTCGGA-ATCGC----T---TT----------------AGTGACCCAAATTCTGGCACATGTT---
droRho1	scf7180000779999:402397-402652 +		AATAC--AACG--------CG--GT---AGAGGAAACTGTT-TATA----CCGAATTAT-TTTAATTCGCC-G---AGAAGGTTTGTTT--GTGTTT--------CTTATT------------TATTTCT-TAC-CC----CAGCTGAAGGTC---------TGAAAAGCGTAAACAAC------GCG-A-------------------AAACAAAT-G----CAATAG-------TTTATGCAAAGGTTGCATTTTTGTGGCTTACGTA---------GCCACCTTT-ACCTG---TTAT-CCCATTCTGATCTTT-CCCC-------------TTGTCTTTATCTCGGC-TTCGC----T---TT----------------ATTGACCCAAATTCTGGCACATGTT---
droFic1	scf7180000454066:1320521-1320755 +		AAAAC--AACG--------TG--AA---TCAGGAAACAGTC-TATT----CCGAATTAT-TTAAATTCGCC-G---AGAAGGTTTGTTT--GTGTTC--------TCTATT------------TATTTTT-TAC-CC-----CGCTGAAGGTC---------GGAAAAGCGTAAACAAC------GAA-T-------------------AAATAAA----------TAA-------GTTCTGCAAAGGTTGCATTTTTGCGGCTTACGTA---------GCCACCTT-------------T-------CGGATCTTT-TTCC-------------TTGTGTTTATCTCGGT-CCCGC----T---TC----------------TGTGACCCAAATACTGGCACATGTT---
droKik1	scf7180000302406:76993-77243 -		AATTCTCAGCG--------TC--GTTCTCGAGGAAATCGTT-AA------ACGAATTACAATTAATTCGCC-GATAAGAAGGTTTGTTT--GTGTTTT---GCCTCGCACTT-----------GCTTTTC-CAC-CT----CCGCTGAAGGTC---------GGAAAAGCGTAAACAAC------------------------------AGTTGATT-----------------G-ACTCGGCAAAGGTTGCATTTTTGCGGCTTACGAC---------GTTGC-----------------------CCTGATCTTT-TTCCCTT------CCTCCCGTCTTTATCACGCT-GTCGC----TGTGTT----------------TGTGACCCAAATTCTGGCACATGTT---
droAna3	scaffold_13266:17834834-17835049 -		AATTC--GCCGTTTATATTCG--AT---TGAGGAAAGAGTT-TACA----TCG-------------------------AAGGTTTGTTT--A---------------------------------------------------GTT-ATGG-G---------GGGAAACCGTAAACAAC------GCCGC-------------------AAATAAAT-G----CAA-----------TTCTGCAAAGGTTGCATTTTTGCGGCTTACGTT---------GTCGCATTTCATTTG---TTTG-TCCGCCCAGATCTTC-GGCC----------------CCCTTATCGCCGC-CACACTTTCC---CA----------------AGTGACCCAAATTCGGGCACATGTT---
droBip1	scf7180000396735:1099459-1099738 -		AATTC--GTCGTTTATTTTCG--AT---TGAGGAAAGAGTT-TTCA----CCG-------------------------AAGGTTTGTTT--A-GTCTTTCCGTTCTGC---GGTTCTTCTATTCTTGTT---TT-CA-------CAGAAGGTCGTGTAAAGGGGGAAACCGTAAACAAC------GCCGC-------------------AAATAAATAA----AAAC-G-------CTACTGCAAAGGTTGCATTTTTGCGGCTTACGTT---------GTCACATTTCGCTTG---TTTG-TCCGCTCTGATCTTC-TGCC--TTCTGGCCGCCCCCCCCTTATCGCCGC-CACGC----T---TGCCG-------------AGTGACCCAAATTCGGGCACATGTT---
dp5	3:16241644-16241841 +		------------------------------------------------------------TTTGATTTGACAA---AGAAGGTTTGTTTTC----------------------------------------------CATTAAGCTGAAGGTC---------G----ACCGTAACGAAC------GCGGCGAAGAAACACAAATAGTGGATA--AAC--AGTGCCCTT------T-TTTCTGCAACTGTGGCATTTTTGCGGGTTTTCTC--------GGT----------TTG--CTTTT-CCCATTATGATCTCT-CTCC-------------CTCTC-------------TCTC----T---CT----------------TTTGACCCAAATTCTCCCACATGTT---
droPer2	scaffold_4:523168-523364 -		------------------------------------------------------------TTTGATTTGACAA---AGAAGGTTTGTTTTC----------------------------------------------CATTAAGCTGAAGGTC---------G----ACCGTAACGAAC------GCGGCGAAGAAACACAAATAGTGGATA--AAC--AGTGCCCT-------T-TTTTTGCAACTGTGGCATTTTTGCGGGTTTTCTC--------GGT----------TTG--CTTTT-CCTATTATGATCTCT-CTCC-------------CTCTC-------------TCTC----T---CT----------------TTTGACCCAAATTCTCCCACATGTT---

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AACAC--AACC--------C-----------GGAAACAGTT-TACA----CCGAATTGC-TTTAATTCGAC-T---AGAAGGTTTGTTTTCGTGTCT--------TTTATT------------CATCTCCCTAC-CACAACAAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------GCG-C-------------------AATCGAAA-G----CAACGGGTTTAT-AATCCGCTAAGGTTGCATTTTTGCGGCTTACGTG---------GACCGCTT------------TT------GGCGATCTTT-CCCC-------------TCGACTTTATCTCGGT-CCCAC----T---TA----------------TGTGACCTAAATTCGGGCACATGTT---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................TGC-TTTAATTCGAC-T---AGAA...........................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TTGC-TTTAATTCGAC-T---AGAAGG.........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AATCGAAA-G----CAACGGGTTTAT-AATC...........................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................AAACAAT------GCG-C-------------------AATCGAAA-.................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................C-------------------AATCGAAA-G----CAACGGG.....................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AACAAGCTGAAGGTC---------GGAAAAGC.................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................TCCCTAC-CACAACAAGCTGAAGGTC---------GGA......................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AAT------GCG-C-------------------AATCGAAA-G----CAACGG......................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TTTAATTCGAC-T---AGAAGC.........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AACC--------C-----------GGAAACAGTT-TACA----CCGA.....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TGCGGCTTACGTG---------GACCG...............................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................ATTCGAC-T---AGAAGGTTTGTTTTCGT..............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GACTTTATCTCGGT-G..........................................................	15	11	0.18	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0

droSec2

AACAC--AACC--------C-----------GGAAACAGTT-TACA----CCGAATTGC-TTTAATTCGAC-T---AGAAGGTTTGTTTTTGTGTCT--------TTTATT------------CATCTCCCTAC-CACAACAAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------GCG-C-------------------AATCGAAA-G----CAACGGGTTTAT-AATCCGCTAAGGTTGCATTTTTGCGGCTTACGTG---------GATCGC------------TTTT------AGCGATCTTT-CCCC-------------TCGACTTTATCTCGGT-CCCAC----T---TA----------------TGTGACCCAAATTCGGGCACATGTT---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................................................................................GCG-C-------------------AATCGAAA-G----CAACGG......................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.............................................................................................................................................................................AACAAT------GCG-C-------------------AATCGAAA-G----CA..........................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
........................................T-TACA----CCGAATTGC-TTTAATT........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.ACAC--AACC--------C-----------GGAAACAGTT-TAC..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
........................................................TGC-TTTAATTCGAC-T---AGAAGCAC.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
........................................................TGC-TTTAATTCGAC-T---AGAA...........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..........................................................C-TTTAATTCGAC-T---AGAAGC.........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..................................................................................................................................................GAAGGTC---------GGAAAAGCGTAAACAAT------GCG-..............................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................TGCGGCTTACGTG---------GATCGC------------TTTT------AGC.....................................................................................................	26	1	1.00	1	0	1	0	0
...........................................................................................................................................ACAAGCTGAAGGTC---------GGAAAAG..................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0

dm3

AACAC--AACC--------C-----------GGAAACAGTT-TACA----CCGAATTGC-TTTAATTCGAC-T---AGAAGGTTTGTTTTCGTGTCT--------TTTATT------------CATCTCC-TAC-CACAACAAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------GCG-C-------------------AATCGAAA-G----CAACGGGTTTAT-AATCCGCAATGGTTGCATTTTTGCGGCTTACGTG---------GACCGCTT------------TT------TGCGATCTTT-CCCC-------------TCGTATTTATCTCGCT-CCCAC----T---TA----------------TGTGACCCAAATTCGGGCACATGTT---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................TTGC-TTTAATTCGAC-T---AGAAGG.........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................AAGCTGAAGGTC---------GGAAAA...................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TT------TGCGATCTTT-CCCC-------------TCGTATT.....................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GTT-TACA----CCGAATTGC-TTT............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AACC--------C-----------GGAAACAGTT-TACA----CCGAAT...................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........CC--------C-----------GGAAACAGTT-TACA----CCGAAT...................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CAC--AACC--------C-----------GGAAACAGTT-TACA----CG.......................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................AATTCGAC-T---AGAAGGTTTGTT...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TGC-TTTAATTCGAC-T---AGAAGCA........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTAAACAAT------GCG-C-------------------AATCGAA...................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AACAGTT-TACA----CCGAATTGC-TTTAATTC.......................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................GTT-TACA----CCGAATTGC-TT.............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TAC-CACAACAAGCTGAAGGTC---------GGAA.....................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TGC-TTTAATTCGAC-T---AGAAGGT........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................C-CACAACAAGCTGAAGGTC---------GGAAAAGC.................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................TTGTTTTCGTGTCT--------TTTT..............................................................................................................................................................................................................................................................................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AATAC--AACC--------C-----------GGAAACAGTT-TACA----CCGAATTGC-ATTAATTCGAC-T---AGAAGGTTTGTTT--GTCTCT--------TTTATT------------TATCTGC-TATCCACA--AAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------GCG-C-------------------CATCGCAA-G----CAATGGGTTTAT-AATCCCCAAAGGTTGCATTTTTGCGGCTTACGTT---------------------TTA--TTTTT-CGCCATGCGATCTATTCCCC-------------TAGTCTTTATCTCGAT-CCCAC----T---TATGTATGTATGTACATATGTGACCCA-ATTGAGGCACATGTTT--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......AACC--------C-----------GGAAACAGTT-TACA----CC.......................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	3	0	0
......................................GTT-TACA----CCGAATTGC-ATTAATT........................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2	0
....................................................................................................................................ATCCACA--AAGCTGAAGGTC---------GGAAAAGC.................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	2	0	0
........................................................TGC-ATTAATTCGAC-T---AGA............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.......AACC--------C-----------GGAAACAGTT-TACA----CCGAATTGC-...............................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.............................................A----CCGAATTGC-ATTAATTCGAC-T---AGA............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................GCTGAAGGTC---------GGAAAAGC.................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................ACAAT------GCG-C-------------------CATCGCAA-G----CAATG.......................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
......................................................ATTGC-ATTAATTCGAC-T---AGAAGCA........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....C--AACC--------C-----------GGAAACAGTT-TACA----CCGA.....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
AATAC--AACC--------C-----------GGAAACAGTT-TACA----CC.......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
........................................................TGC-ATTAATTCGAC-T---AGAA...........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTATCTCGAT-CCCAC----T---TATGT.........................................	21	1	1.00	1	0	0	0	0	1	0	0
............................................................ATTAATTCGAC-T---AGAAGC.........................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	1	0

droYak3

AACAA--AACC--------C-----------GGAAACAGTT-TACATTTTGCGAATTGC-TTTAATTCGAC-T---AGAAGGTTTGTTT--TCCTCT--------TTTATT------------TATCTCC-TAC-CAC---CAGCTGAAGGTC---------GGAAAAGCGTAAACAAT------CCT-C-------------------AGCGCAAA-G----CAATGGGTTTAT-AATCCGCAAAGGTTGCATTTTTGCGGCTTACGTG---------GACCAGTTT---TTGTATTTTT-CGCTTGGCGATCTTTTCCCC-------------CGGTCTTTATCTCGAT-CCCAC----T---TA----------------AGTGACCCAAATTCTGGCACATGTT---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................AACAGTT-TACATTTTGCGA.....................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
......................................................ATTGC-TTTAATTCGAC-T---AGA............................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TTT-CGCTTGGCGATCTTTTCCCC-------------CGGTCT......................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................T-TACATTTTGCGAATTGC-TTT............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TATCTCGAT-CCCAC----T---TA----------------AGT.........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................TTTGCGAATTGC-TTTAATTC.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TACGTG---------GACCAGTTT---TTT.....................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......AACC--------C-----------GGAAACAGTT-TACATTTTGC.......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................GTT-TACATTTTGCGAATTGC-TTTAA..........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....A--AACC--------C-----------GGAAACAGTT-TACATTTT.........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...AA--AACC--------C-----------GGAAACAGTT-TACATTTTGCGA.....................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................GAATTGC-TTTAATTCGAC-T---A..............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................T---AGAAGGTTTGTTT--TCCTCT--------TTT...............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................GC-TTTAATTCGAC-T---AGAAG..........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................TCTCGAT-CCCAC----T---TA----------------AGTGACCC....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................AGTT-TACATTTTGCGAATT..................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.ACAA--AACC--------C-----------GGAAACAGTT-TACAT............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................ATTGC-TTTAATTCGAC-T---AGAAGCA........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
AACAA--AACC--------C-----------GGAAACAGTT-TACAT............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................GTT-TACATTTTGCGAATTGC-TTTA...........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTATCTCGAT-CCCAC----T---TA----------------AGTG........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................AACAGTT-TACATTTTGCGAAT...................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................TGC-TTTAATTCGAC-T---AGAAGC.........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................T-TACATTTTGCGAATTGC-TTTAATTC.......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................TACATTTTGCGAATTGC-TTTAAT.........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................GTT-TACATTTTGCGAATTGC-T..............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................TGC-TTTAATTCGAC-T---AGAAG..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GTTTAT-AATCCGCAAAGGTTGC...............................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
AACAA--AACC--------C-----------GGAAACAGTT-TA...............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................TTTAT-AATCCGCAAAGGTT.................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................TACATTTTGCGAATTGC-TT.............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................TATT------------TATCTCC-TAC-CAC---CAG...........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AAGGTTGCATTTTTGCGG.....................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
........................................................TGC-TTTAATTCGAC-T---AGAA...........................................................................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................GC-TTTAATTCGAC-T---AGAA...........................................................................................................................................................................................................................................................................................................................................	18	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AATAC--AGCG--------CG--AT---AGAGGAAATAGTTTTAAA----TCGAATTAT-TTGAATTCGTT-A---AGAAGGTTTGTTT--GTGTCTTTTTGTTATTTATT------------TATTTCT-TAA-CCCGA-GAACTGAAGGTC---------GGAAAAGCGTAAACAAC------GCG-A-------------------AAATAAAA-G----CAATACT------TTTCCGCAAAGGTTGCATTTCTGCGGCTTACGTGTAGGTTTT-CCTCCC-T----TT--------------GCTGATCTTT-TACCCCC------CTTCTTGTCTTTATCTCACTTTTCAC----TT--TG----------------AGTGACCCAAATTCTGGCACATGTTTTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACAC--AACG--------CGGCGT---ACAGGAAACCGTT-TATA----CCGAATTAT-TTTAATTCGCC-C---AGAAGGTTTGTTT--GTGTTTT------TCTCATT------------TACTTCT-TAG-CCC---CAGCTGAAGGTC---------GGAAAAGCGTAAACAAC------GCG-C-------------------AAAATAACAG----AGGCGGT----T-CTTCTGCAAAGGTTGCATTTTTGCGGCTTACGTA---------GGCACCTTC---TTG--TTTTT-CACGTTCTGATCTTT-CCCC--C------CTTGGCGG-CTTATCTCGTT-GCCAC----T---TG----------------TGTGACCCAAATTCTGGCACATGTT---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATAC--AACG--------CG--GT---AGAGGAAACAGTT-TATA----CCGAATTAT-TTTAATTCGCC-G---AGAAGGTTTGTTT--GTGTTT--------CTTATG------------TATTTCT-TGT-CCC---GACCTTCAGGCC------AGCGGAAAAGCGTAAACAAC------GCG-A-------------------AAAAGAAAAT----CAATGGT-TTCTGTTTCTGCAGAGGTTGCATTTCTGCGGCTTACGTA---------GCCCCCTT-----TG---TTTT-CACGTTCTGATCTTT-CCCC--------------TGTCTTTATCTCGGT-CTCAC----T---TT----------------AGTGACCCAAATTCTGGCACATGTT---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATAC--AACG--------CG--GT---AGAGGAAACAGTT-TATG----CCGAATTAT-TTTAATTCGCC-G---AGAAGGTTTGTTT--GTGTTT--------CGCATT------------TATTTCT-TAA-CC----CAGTTGAAGGTC---------GGAAAAGCGTAAACAACAACAACGCG-A-------------------AAACAAAT-G----CAATGG-------TTTCAGCAAAGGTTGCATTTTTGTGGCTTACGTA---------GCCACCTTT---TTG--TTTTTACCCATTCTGATCGTT-CCCC-------------TTGTCTTCAACTCGGA-ATCGC----T---TT----------------AGTGACCCAAATTCTGGCACATGTT---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AATAC--AACG--------CG--GT---AGAGGAAACTGTT-TATA----CCGAATTAT-TTTAATTCGCC-G---AGAAGGTTTGTTT--GTGTTT--------CTTATT------------TATTTCT-TAC-CC----CAGCTGAAGGTC---------TGAAAAGCGTAAACAAC------GCG-A-------------------AAACAAAT-G----CAATAG-------TTTATGCAAAGGTTGCATTTTTGTGGCTTACGTA---------GCCACCTTT-ACCTG---TTAT-CCCATTCTGATCTTT-CCCC-------------TTGTCTTTATCTCGGC-TTCGC----T---TT----------------ATTGACCCAAATTCTGGCACATGTT---	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAAC--AACG--------TG--AA---TCAGGAAACAGTC-TATT----CCGAATTAT-TTAAATTCGCC-G---AGAAGGTTTGTTT--GTGTTC--------TCTATT------------TATTTTT-TAC-CC-----CGCTGAAGGTC---------GGAAAAGCGTAAACAAC------GAA-T-------------------AAATAAA----------TAA-------GTTCTGCAAAGGTTGCATTTTTGCGGCTTACGTA---------GCCACCTT-------------T-------CGGATCTTT-TTCC-------------TTGTGTTTATCTCGGT-CCCGC----T---TC----------------TGTGACCCAAATACTGGCACATGTT---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATTCTCAGCG--------TC--GTTCTCGAGGAAATCGTT-AA------ACGAATTACAATTAATTCGCC-GATAAGAAGGTTTGTTT--GTGTTTT---GCCTCGCACTT-----------GCTTTTC-CAC-CT----CCGCTGAAGGTC---------GGAAAAGCGTAAACAAC------------------------------AGTTGATT-----------------G-ACTCGGCAAAGGTTGCATTTTTGCGGCTTACGAC---------GTTGC-----------------------CCTGATCTTT-TTCCCTT------CCTCCCGTCTTTATCACGCT-GTCGC----TGTGTT----------------TGTGACCCAAATTCTGGCACATGTT---	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AATTC--GCCGTTTATATTCG--AT---TGAGGAAAGAGTT-TACA----TCG-------------------------AAGGTTTGTTT--A---------------------------------------------------GTT-ATGG-G---------GGGAAACCGTAAACAAC------GCCGC-------------------AAATAAAT-G----CAA-----------TTCTGCAAAGGTTGCATTTTTGCGGCTTACGTT---------GTCGCATTTCATTTG---TTTG-TCCGCCCAGATCTTC-GGCC----------------CCCTTATCGCCGC-CACACTTTCC---CA----------------AGTGACCCAAATTCGGGCACATGTT---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................CA----TCG-------------------------AAGGTTTGTTT--A---------------------------------------------------GTT-ATGG-G---------.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................AACCGTAAACAAC------GCCGC-------------------CT........................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0	0

droBip1

AATTC--GTCGTTTATTTTCG--AT---TGAGGAAAGAGTT-TTCA----CCG-------------------------AAGGTTTGTTT--A-GTCTTTCCGTTCTGC---GGTTCTTCTATTCTTGTT---TT-CA-------CAGAAGGTCGTGTAAAGGGGGAAACCGTAAACAAC------GCCGC-------------------AAATAAATAA----AAAC-G-------CTACTGCAAAGGTTGCATTTTTGCGGCTTACGTT---------GTCACATTTCGCTTG---TTTG-TCCGCTCTGATCTTC-TGCC--TTCTGGCCGCCCCCCCCTTATCGCCGC-CACGC----T---TGCCG-------------AGTGACCCAAATTCGGGCACATGTT---	Size	Hit Count	Total Norm	Total
No Reads

dp5

------------------------------------------------------------TTTGATTTGACAA---AGAAGGTTTGTTTTC----------------------------------------------CATTAAGCTGAAGGTC---------G----ACCGTAACGAAC------GCGGCGAAGAAACACAAATAGTGGATA--AAC--AGTGCCCTT------T-TTTCTGCAACTGTGGCATTTTTGCGGGTTTTCTC--------GGT----------TTG--CTTTT-CCCATTATGATCTCT-CTCC-------------CTCTC-------------TCTC----T---CT----------------TTTGACCCAAATTCTCCCACATGTT---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................ATGATCTCT-CTCC-------------CTCTC-------------TC........................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

------------------------------------------------------------TTTGATTTGACAA---AGAAGGTTTGTTTTC----------------------------------------------CATTAAGCTGAAGGTC---------G----ACCGTAACGAAC------GCGGCGAAGAAACACAAATAGTGGATA--AAC--AGTGCCCT-------T-TTTTTGCAACTGTGGCATTTTTGCGGGTTTTCTC--------GGT----------TTG--CTTTT-CCTATTATGATCTCT-CTCC-------------CTCTC-------------TCTC----T---CT----------------TTTGACCCAAATTCTCCCACATGTT---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

dsi_6426

2r:7130966-7131115 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-8.3	-7.8	-7.8