ID:

dsi_641

 Coordinate:

3l:15988763-15988912 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.0 -31.0 -30.7

Flybase annnotation

exon [3l_15988913_15989207_-]; five_prime_UTR [3l_15988913_15989207_-]; intron [3l_15988210_15988912_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACTTTATTCGCCGATAAGCAGTGTCGCCCATTCCAATTGACTGATAACAGGTGATTAAAAGTGTTAGTTGTGGGTTTCTGGGTTGTACTATCGACGAGATCCATATCACTAGGGGCCCGGGTCGCCTAGAAGAGTCACTTTCATTCAGTCGAATTCTACTGGTTGGTAGAACAAGTTGCAACTTCCTGGTCTCTAATTGTTAAGATTCCGCTAAGATAGGTGAGTGAGTGTGTGTGTAAATGAAACAGTG
*********************************************************************(((((((((...((((......)))))))))))))........(((((.((((((.((.((((((.....))).))))).))).(((((((....))))))).((((....))))))))))))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR902009
testis
.......................................................................................................................................................................AGAACAAGTTGCAACTTCCTGGTCT.......................................................... 25 0 1 4.00 4 1 2 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GAACAAGTTGCAACTTCCTGGTCT.......................................................... 24 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTAGAACAAGTTGCAACTTCCTGGTCT.......................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTAGAACAAGTTGCAACTTCCTGGT............................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGGTTGGTAGAACAAGTTGCAACTTCCT............................................................... 28 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTGGAACAAGTTGCAACT................................................................... 18 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTTGCAACTTCCTGGTCT.......................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AGAACAAGTTGCAACTTCCTGGTCTCTA....................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AACAAGTTGCAACTTCCT............................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................CTACTGGTTGGTAGAACAAGTTGCAAC.................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGGTTGGTAGAACAAGTTGC....................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................ACTGGTTGGTAGAACAAGTTGCAACC................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTCTAATTGTTAAGATTCCGCTAAG................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................GCAACTTCCTGGTCTCTAATTGTTAAG.............................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CGGGTTGGTAGAACAAG........................................................................... 17 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................ACTGGTTGGTAGAACAAG........................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTTGCAACTTCCTGGTCTCT........................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGAATTCTACTGGTTGGTA.................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGGTTGGTAGGACAAGTTGCAACTTC................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................ACTGGTTGGTAGAACAAGTTGCAACTTCC................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGTGAGTGTGTGTGTAAATG........ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................GTGGGTTTCTGGGTT...................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................GTAGAACAAGTTGCAACTTCCTGGG............................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GTTGCAACTTCCTGGTCTCC........................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GTCTCTAATTGTTAAGATT........................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGTGGAACAAGTTGCAA..................................................................... 17 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................TCGCCCATTCCAATTGACTGA.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................GTCGAATTCTACTGGTTGGTA.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AGAACAAGTTGCAACTTCCTGGTC........................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CTGGTTGGTAGAACAAGT.......................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGGAACAAGTTGCAACT................................................................... 17 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................CTGGTTGATAGAACAA............................................................................ 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................CTGGTTGATAGAACA............................................................................. 15 1 7 0.43 3 0 0 0 0 0 0 0 3 0 0 0 0
........................................................................................................................................................................................................................TAGGCGAGTGAGTGTGTTT............... 19 2 12 0.17 2 0 0 0 0 0 0 0 0 0 0 0 2
..........CCGATAAGCAGCGTC................................................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GGAACAAGTTGCAACT................................................................... 16 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................GCCCGAGTCGCCTGGA........................................................................................................................ 16 2 20 0.15 3 0 0 0 0 0 1 1 1 0 0 0 0
.............................................................................................................................................CAGTCAGTCGAATTCT............................................................................................. 16 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................GTCTAATGGTTGGTAGAGC.............................................................................. 19 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................GCCCGGGTGGTCTAG......................................................................................................................... 15 2 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................................................TGGAACAAGTTGCAACTTTCA............................................................... 21 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................TGGGTTTGAGGGTTGTA................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
..........CCGCTAAGGAGTGTCG................................................................................................................................................................................................................................ 16 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................CTAGTGGTTAGGATTCCGC....................................... 19 3 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................GTTGGTAGAATAAGTGGGA...................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................TAGGAGCCCGGGTAGC............................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TGAAATAAGCGGCTATTCGTCACAGCGGGTAAGGTTAACTGACTATTGTCCACTAATTTTCACAATCAACACCCAAAGACCCAACATGATAGCTGCTCTAGGTATAGTGATCCCCGGGCCCAGCGGATCTTCTCAGTGAAAGTAAGTCAGCTTAAGATGACCAACCATCTTGTTCAACGTTGAAGGACCAGAGATTAACAATTCTAAGGCGATTCTATCCACTCACTCACACACACATTTACTTTGTCAC
**********************************************************(((((((((...((((......)))))))))))))........(((((.((((((.((.((((((.....))).))))).))).(((((((....))))))).((((....))))))))))))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 O002
Head
 M025
embryo
 SRR553488
RT_0-2 hours eggs
.......................................TCACCATTGTCAACTAATTTT.............................................................................................................................................................................................. 21 3 4 10.75 43 30 10 0 0 0 0 0 2 0 1 0
..........................................CCATTGTCAACTAATTTT.............................................................................................................................................................................................. 18 2 14 7.93 111 73 38 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AAAATATGTCAGGTTAAGATG........................................................................................... 21 3 5 3.00 15 0 0 15 0 0 0 0 0 0 0 0
................................................................................CCAACATGATAGCTGCTCTAGGTAT................................................................................................................................................. 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................AGTGAAAGTAAGTCAGCTTAAGATG........................................................................................... 25 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0
.........................................ACCATTGTCAACTAATTTT.............................................................................................................................................................................................. 19 2 4 1.25 5 2 1 0 0 0 0 0 0 2 0 0
...................................................................................................................................................................ACCACCTTGTTCAACGTTGAA.................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................ACAGCGGGTAAGGTTGACTGA................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................CGTCACAGCGGGTAAGGTTAA.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................GCGGGTAAGGTTAACTGACT.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................GCTGCTCTAGGTATAGTGATC.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................GTCAGCTTAAGATGACCA....................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................GGCCCAGTGGATCTTCTC.................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................AAAATATGTCAGGTTAAGAT............................................................................................ 20 3 17 0.71 12 0 0 12 0 0 0 0 0 0 0 0
...............................................................................CCCAATATGATAGCTCCT......................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................CCACCACCTTGTTCAACGT...................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................GTTGCAGGACCAGAGCT....................................................... 17 2 9 0.22 2 0 0 0 0 1 0 0 0 0 0 1
..........................................CCATTGTCAACTAATTTTGA............................................................................................................................................................................................ 20 3 19 0.16 3 3 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACCTTGTTCAACGTTGAAAGT............................................................... 21 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
........................................CACCATTGTCAACTAATTTT.............................................................................................................................................................................................. 20 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
..........................................CCATTGTCGACTAATTTT.............................................................................................................................................................................................. 18 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GTTGCAGGATCAGAG......................................................... 15 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 12:31 AM