ID:

dsi_6385

 Coordinate:

4:820173-820322 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.9 -6.9 -6.9 -6.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTATGTTTCCTCACAAAGATTTTCGCAATATAATTTTTTTAAGCAGTGGGTACTTTTTGTAAAGATTCCTTTATAAAGTGACAAAGTTGTTAATACAATTATAGGTACAATGAAAAATTCCATCAAAGTAAAATACTTTTAATATCTATTATATGTTATTAAATATAGCCTGAAATCAATATCAACTTATATTTTTACAGATATAATGTTTGCCCATATGATTAATACAGATAAAAGCATTGAAACCCTA
***************************************************************************************...........((..((((...........................((..(((((((............)))))))..))))))))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M023
head
 GSM343915
embryo
 O001
Testis
.......................................TAAGCAGTGGGTACTTTTTGTAAAGAT........................................................................................................................................................................................ 27 0 1 17.00 17 17 0 0 0 0 0 0 0 0 0 0
....................................TTTTAAGCAGTGGGTACTTTTTGTAAAGA......................................................................................................................................................................................... 29 0 1 14.00 14 1 10 3 0 0 0 0 0 0 0 0
...TGTTTCCTCACAAAGATTTTCGCAATA............................................................................................................................................................................................................................ 27 0 1 12.00 12 0 10 2 0 0 0 0 0 0 0 0
..........TCACAAAGATTTTCGCAATATAATT....................................................................................................................................................................................................................... 25 0 1 10.00 10 0 8 2 0 0 0 0 0 0 0 0
.......................................TAAGCAGTGGGTACTTTTTGTAAAGA......................................................................................................................................................................................... 26 0 1 9.00 9 2 5 1 0 1 0 0 0 0 0 0
............................TATAATTTTTTTAAGCAGTGGGTACTTT.................................................................................................................................................................................................. 28 0 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0
..............................TAATTTTTTTAAGCAGTGGGTACTTTT................................................................................................................................................................................................. 27 0 1 7.00 7 6 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTACAGATATAATGTTTGCCCATATGA............................. 28 0 1 7.00 7 0 5 1 0 0 0 1 0 0 0 0
......TTCCTCACAAAGATTTTCGCAATA............................................................................................................................................................................................................................ 24 0 1 7.00 7 0 7 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGCCCATATGATTAATACAGATAAAAGCA........... 29 0 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TACAGATAAAAGCATTGAAACCCTA 25 0 1 5.00 5 4 0 0 0 0 1 0 0 0 0 0
....................................TTTTAAGCAGTGGGTACTTTTTGTAAAGAT........................................................................................................................................................................................ 30 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGCCCATATGATTAATACAGATAAAAGCAT.......... 30 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
......................................TTAAGCAGTGGGTACTTTTTGTAAAGAT........................................................................................................................................................................................ 28 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
..............................TAATTTTTTTAAGCAGTGGGTACTTT.................................................................................................................................................................................................. 26 0 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TACAGATATAATGTTTGCCCATATGA............................. 26 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0 0
....................................TTTTAAGCAGTGGGTACTTTTTGTAA............................................................................................................................................................................................ 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAATGTTTGCCCATATGATTAATACAGA................... 28 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0
......................................TTAAGCAGTGGGTACTTTTTGTAAAGA......................................................................................................................................................................................... 27 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0
.......TCCTCACAAAGATTTTCGCAATATAATT....................................................................................................................................................................................................................... 28 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTAATACAGATAAAAGCATTGAAACCC.. 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.....................................TTTAAGCAGTGGGTACTTTTTGTAAAGA......................................................................................................................................................................................... 28 0 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0
.......................................................................................TGTTAATACAATTATAGGTACAATGA......................................................................................................................................... 26 0 1 3.00 3 0 1 1 0 0 1 0 0 0 0 0
....................................TTTTAAGCAGTGGGTACTTTTTGTA............................................................................................................................................................................................. 25 0 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0
............................TATAATTTTTTTAAGCAGTGGGTACTTTT................................................................................................................................................................................................. 29 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGTTAATACAATTATAGGTACAATGAA........................................................................................................................................ 27 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
...................................TTTTTAAGCAGTGGGTACTTTTTGTA............................................................................................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.......TCCTCACAAAGATTTTCGCAATATAAT........................................................................................................................................................................................................................ 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.................................TTTTTTTAAGCAGTGGGTACTTTTTG............................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......TCCTCACAAAGATTTTCGCAATATA.......................................................................................................................................................................................................................... 25 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
.............................................................................................TACAATTATAGGTACAATGAAAAATT................................................................................................................................... 26 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................TTACAGATATAATGTTTGCCCATATGA............................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........CTCACAAAGATTTTCGCAATATAATT....................................................................................................................................................................................................................... 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TATGATTAATACAGATAAAAGCATTGAAAA.... 30 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TATTATATGTTATTAAATATAGCCTGA............................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCAATATCAACTTATATTTTTACAGA................................................. 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGATTAATACAGATAAAAGCATTGA....... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATAATGTTTGCCCATATGATTAATA....................... 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
..................................................................TCCTTTATAAAGTGACAAAGTTGTTAA............................................................................................................................................................. 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
.....TTTCCTCACAAAGATTTTCGCAATA............................................................................................................................................................................................................................ 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..................................TTTTTTAAGCAGTGGGTACTTTTTGT.............................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....TTTCCTCACAAAGATTTTCGCAATATA.......................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TAATACAGATAAAAGCATTGAAACCCTA 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.TATGTTTCCTCACAAAGATTTTCGCAATA............................................................................................................................................................................................................................ 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTAAATATAGCCTGAAATCAATATCAAC................................................................ 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTAAATATAGCCTGAAATCAATATCAA................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTATTAAATATAGCCTGAAATCAATATC................................................................... 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGTTTGCCCATATGATTAATACAGA................... 25 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................................................................................................................................................TGATTAATACAGATAAAAGCATTGAAACCC.. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................ACAATTATAGGTACAATGAAAAATT................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......TCCTCACAAAGATTTTCGCAATA............................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....TTTCCTCACAAAGATTTTCGCAATT............................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................TAATTTTTTTAAGCAGTGGGTACTTTTT................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACAGATATAATGTTTGCCCATATGATTAA......................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................TTAAGCAGTGGGTACTTTTTG............................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..ATGTTTCCTCACAAAGATTTTCGCA............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.....................................TTTAAGCAGTGGGTACTTTTTGTAAAGAT........................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......TTCCTCACAAAGATTTTCGCAATATA.......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CCATATGATTAATACAGATAAAAGCA........... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................TATAATTTTTTTAAGAAGTGGGTACTTTT................................................................................................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TAATACAATTATAGGTACAATGAAAAATT................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TAATACAGATAAAAGCATTGAAACCC.. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......GTCCTCACAAAGATTTTCGCAATA............................................................................................................................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................ATCAAGGTAAAATACTTTTAATATCTA...................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................TTTTTAAGCAGTGGGTACTTTTTGTAAA........................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TATGATTAATACAGATAAAAGCATTGAA...... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................TTTCGCAATATAATTTTTTTAAGCAG............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCAATATCAACTTATATTTTTACAGAA................................................ 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................TTTTAAGCAGTGGGTACTTTTTGTAAA........................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................TTTAAGCAGTGGGTACTTTTTGTAAAGAA........................................................................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................TTTCAAGCAGTGGGTACTTTTTGTAAAGAT........................................................................................................................................................................................ 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTTTACAGATATAATGTTTGCCCATATGA............................. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TAGGTACAATGAAAAATTCCATCAAAG.......................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................TACAGATAAAAGCATTGAAACCC.. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................AATACAATTATAGGTACAATGAAAAA..................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................TCGCAATATAATTTTTTTAAGCAGT........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ATCAAAGTAAAATACTTTTAATATCTA...................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTTTACAGATATAATGTTTGCCCATAA............................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................TTTTTTTAAGCAGTGGGTACTTTTTGT.............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CAGATAAAAGCATTGAAACCC.. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................TATTAAATATAGCCTGAAATCAATAA.................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......TCCTCACAAAGATTTTCGCAATATAA......................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................TTTTAAGCAGTGGGTACTTTTTGTAAAGAA........................................................................................................................................................................................ 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ATATTTTTACAGATATAATGT......................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................TTTTAAGCAGTGGGTACTTTTTGCAAAGA......................................................................................................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGTTTGCCCATATGATTAATACAGAA.................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
TTATGTTTCCTCACAAAGATTTTCGCAA.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TGAAAAATTCCATCAAAG.......................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................TATAAAGTGACAAAGTTGTTA.............................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................TAAGCAGTGGGTACTTTTTGTAAAGAA........................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CCCATATGATTAATACAGATAAAAGCAT.......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................ATTTTTTTAAGCAGTGGGTACTTTT................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......TTCCTCACAAAGATTTTCGCAATATAA......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................CCTTTATAAAGTGACAAAGTTGTTAT............................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...TGTTTCCTCACAAAGATTTTCGCAATATA.......................................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......TCCTCACAAAGATTTTCGCAATATAAA........................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........CCTCACAAAGATTTTCGCAATATAATT....................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...TGTTTCCTCACAAAGATTTTCGCAATATAA......................................................................................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................AGCAGTGGGTACTTTTTGTAAA........................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
....................................TTTTAAGCAGTGGGTACTTTTTGTT............................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................TATAAAGTGACAAAGTTGTTAATACAAT....................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......TTCCTCACAAAGATTTTCGCAATATAAT........................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................GTGGGTACTTTTTGTAAAGAT........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................TATCAACTTATATTTTTACAGATA............................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TTAAATATAGCCTGAAATCAATATC................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGATTAATACAGATAAAAGCATTGAA...... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................AAGCAGTGGGTACTTTTTGTAAAGAT........................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGTTTGCCCATATGATTAATACAGAA.................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................TTTATAAAGTGACAAAGTTGTTA.............................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TATTAAATATAGCCTGAAATCAATA..................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TCAATATCAACTTATATTTTTACAG.................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................TTTAAGCAGTGGGTACTTTTTGTAAA........................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................AATTTTTTTAAGCAGTGGGTACTTTT................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................TTTGAAGCAGTGGGTACTTTTTGTAAAGAA........................................................................................................................................................................................ 30 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTGCCCATATGATTAATACAGATAAAAGCA........... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................TAATACAATTATAGGTACAATGAAAAA..................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................TTAAGCAGTGGGTACTTTTTGTAAAGATT....................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................ATACAGATAAAAGCATTGAAACCCTA 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................AATTTTTTTAAGCAGTGGGTACTTT.................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATACTTTTAATATCTATTA................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................TATATGTGATTAAATATA................................................................................... 18 1 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
..........................AATAGAATTTTTTGAAGCAGG........................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................TTATTAATACATTTATAGGTA............................................................................................................................................... 21 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TATAGGTACAGTGGAACATT................................................................................................................................... 20 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................ATATCTATTATATCTTATG.......................................................................................... 19 2 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................AGTGACAAAGTTGTA............................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AATACAAAGGAGTGTTTCTAAAAGCGTTATATTAAAAAAATTCGTCACCCATGAAAAACATTTCTAAGGAAATATTTCACTGTTTCAACAATTATGTTAATATCCATGTTACTTTTTAAGGTAGTTTCATTTTATGAAAATTATAGATAATATACAATAATTTATATCGGACTTTAGTTATAGTTGAATATAAAAATGTCTATATTACAAACGGGTATACTAATTATGTCTATTTTCGTAACTTTGGGAT
*****************************************************************************...........((..((((...........................((..(((((((............)))))))..))))))))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M024
male body
..........................................................................................................................................................CAATACTTTATGTCGGACTTT........................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................AAAAATGTCTATATTACAAACGGGTAT................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0
....CAAAGGAGTGTTTCTAAAAGCGTTATAT.......................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.......AGGAGTGTTTCTAAAAGCGTTATATTA........................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0
....CAAAGGAGTGTTTCTAAAAGC................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
AATACAAAGGAGTGTTTCTAAA.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................AAAAATGTCTATATTACAAACGGGT.................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0
......................................................................................................................AGGTAGTTTCATTTTATGAAAATTAT.......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................AGTTATAGTTGAATATAAAAATGTCT................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................AGGAAATATTTCACTGTTTCAACAAT.............................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................CAGTACTTTATGTCGGACTTT........................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:820123-820372 - dsi_6385 TTATG--TTTCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGATT--CCTT-------TATAAAGTGACAAAGTTGTTAATACAATT----AT-AGGTACAATGAAAAATTCCATCAAAGTAAAATACTTTTAATATCTATTATATGTTAT-TAAATATAGCCTGAAATCAATATC---AACTTATATTTTTACAGATATAATGTTTGCCCATATGATTAATACAGATAA---------------AAGCATTGAAACCCTA----------
droSec2 scaffold_40:76838-77087 - TTATG--TTTCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGATT--CCTT-------TATAAAGTGACAAAGTTGTTAATACAATT----AT-AGGTACAATAAAAAATTCCATCAAAGTAAAATACTTTTAATATCTATTATATGTTAT-TAAATATAGCCTGAAATCAATATC---AACTTATATTTTTACAGATATAATGTTTGCCCGTATGATTAATACAGATAA---------------AAGCATTGAAACCCTA----------
dm3 chr4:1033112-1033317 - TTAAT--TTTTCTCA-----------------------------------------------------------------------------------------------------------------------CTTTTTTTAAAGAGC--CCCCAAAGGAATATAATGTGAGAAAGTTTTCGATACAATT----AT-AGGTTCAATGAAAAATTCCATCAAAGTATAATACATTTCATTTTTATTACATGTTAT-TAGATATAGCCTGAAATCAATATC---AAAATATATTTTTACAGATATAATA-----ATAC-AGAATAATACAGATAA---------------TA------GAACACAA----------
droEre2 scaffold_4512:238235-238499 + TCAAAACCTTTCTTACAAACATTTTCACATTA-------------TATTGAAAACGTAATTAAAATATATTTTTACCATTGATATCAATATGTACATACATGAAGTGAGTTGAAATCTG-TCTTATTGTATTTATATTCTGTGAACACTGCCCCG-AATAT--------------------------------------------------ATTTCTATT--------------------TCTA---------GT-ACAACTAAGGCTGGAATCAATATT---GGATTTAAATTTTACAGATATAATTTTTGCCCAT-TTATTAATACTGATCGACAAGAAAAGAATTAT-GTAACGAGAACTAA----------
droYak3 4:1107812-1108125 - GAAAGGCTTTTCTTTAAAACATTTTTGCATTAGAAAAGTAAAATATAATTAAAACGGATTTGAAAT--ACTCTTACCATTGATATCAATATCTA----TATGAAGTGAGTTTAAATCTGGCCCCATTATATTTATATTCTGTGAGCATTGCCCCCGAAGAAATATAAAG-------------GATACAATTTGTAATAAGTCGAAATGAAAAATTCTATT--------------------TCTA---------GAATAAAAATAGTATGAAATCAATATC---GAATTACATTTTTACAGATGTAGTTTTTGTCCGG-TAAATGACACGAAACGCTAT-----TAATTAC-GTAACA---ATTAAGTATTGAAAA
droBia1 scf7180000302087:337321-337417 + AAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTCAATATGCATTATTTGTATT-ATGATATATCCTCGTATCAATACCTTTGAAATACCTTTGTATGGATGTAT----ATGCCATAGGACTATTAC-----------------------------------------------
droTak1 scf7180000415212:117300-117316 - AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGAACACTC----------
droRho1 scf7180000772623:14103-14124 + ATTAA-----------------------------------------------AGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTCAACACTC----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTATG--TTTCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGATT--CCTT-------TATAAAGTGACAAAGTTGTTAATACAATT----AT-AGGTACAATGAAAAATTCCATCAAAGTAAAATACTTTTAATATCTATTATATGTTAT-TAAATATAGCCTGAAATCAATATC---AACTTATATTTTTACAGATATAATGTTTGCCCATATGATTAATACAGATAA---------------AAGCATTGAAACCCTA----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................TAAGCAGTGGG-----------------------TACTTTTTGTAAAGAT...................................................................................................................................................................................................................................27117.0017000000000000017000
...........................................................................................TTT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGA....................................................................................................................................................................................................................................29114.0014000000103000001000
...TG--TTTCCTCACAAAGATTTTCGCAATA-------------..........................................................................................................................................................................................................................................................................................................................................27112.0012000000102000000000
............TCACAAAGATTTTCGCAATA-------------TAA----------------------------------------TT.............................................................................................................................................................................................................................................................................................25110.001000000082000000000
..................................................................................................TAAGCAGTGGG-----------------------TACTTTTTGTAAAGA....................................................................................................................................................................................................................................2619.00900000051001002000
..............................TA-------------TAA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTT.............................................................................................................................................................................................................................................2819.00900000000000009000
.............................................TAA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTTT............................................................................................................................................................................................................................................2717.00700000000000016000
.....................................................................................................................................................................................................................................................................................................TTTACAGATATAATGTTTGCCCATATGA......................................................2817.00700000051100000000
........TTCCTCACAAAGATTTTCGCAATA-------------..........................................................................................................................................................................................................................................................................................................................................2417.00700000070000000000
......................................................................................................................................................................................................................................................................................................................TGCCCATATGATTAATACAGATAA---------------AAGCA.....................2915.00500000001000004000
.....................................................................................................................................................................................................................................................................................................................................TACAGATAA---------------AAGCATTGAAACCCTA----------2515.00500000000010004000
...........................................................................................TTT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGAT...................................................................................................................................................................................................................................3015.00500000010000004000
......................................................................................................................................................................................................................................................................................................................TGCCCATATGATTAATACAGATAA---------------AAGCAT....................3015.00500000000000005000
.............................................................................................T----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGAT...................................................................................................................................................................................................................................2815.00500000000000005000
.............................................TAA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTT.............................................................................................................................................................................................................................................2615.00500000000000014000
.......................................................................................................................................................................................................................................................................................................TACAGATATAATGTTTGCCCATATGA......................................................2614.00400000022000000000
...........................................................................................TTT----TAAGCAGTGGG-----------------------TACTTTTTGTAA.......................................................................................................................................................................................................................................2614.00400000000000004000
...............................................................................................................................................................................................................................................................................................................TAATGTTTGCCCATATGATTAATACAGA............................................2814.00400000031000000000
.............................................................................................T----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGA....................................................................................................................................................................................................................................2714.00400000030000001000
.........TCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------TT.............................................................................................................................................................................................................................................................................................2813.00300000012000000000
.................................................................................................................................................................................................................................................................................................................................TTAATACAGATAA---------------AAGCATTGAAACCC............2713.00300000000000003000
............................................................................................TT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGA....................................................................................................................................................................................................................................2813.00300000011000001000
..................................................................................................................................................................................TGTTAATACAATT----AT-AGGTACAATGA......................................................................................................................................................................2613.00300000011010000000
...........................................................................................TTT----TAAGCAGTGGG-----------------------TACTTTTTGTA........................................................................................................................................................................................................................................2513.00300000000001002000
..............................TA-------------TAA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTTT............................................................................................................................................................................................................................................2913.00300000000000003000
..................................................................................................................................................................................TGTTAATACAATT----AT-AGGTACAATGAA.....................................................................................................................................................................2713.00300000030000000000
..........................................................................................TTTT----TAAGCAGTGGG-----------------------TACTTTTTGTA........................................................................................................................................................................................................................................2613.00300000000000003000
.........TCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------T..............................................................................................................................................................................................................................................................................................2712.00200000010000001000
........................................................................................TTTTTT----TAAGCAGTGGG-----------------------TACTTTTTG..........................................................................................................................................................................................................................................2612.00200000000000002000
.........TCCTCACAAAGATTTTCGCAATA-------------TA........................................................................................................................................................................................................................................................................................................................................2512.00200000011000000000
........................................................................................................................................................................................TACAATT----AT-AGGTACAATGAAAAATT................................................................................................................................................................2612.00200000001010000000
......................................................................................................................................................................................................................................................................................................TTACAGATATAATGTTTGCCCATATGA......................................................2712.00200000020000000000
...........CTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------TT.............................................................................................................................................................................................................................................................................................2612.00200000011000000000
............................................................................................................................................................................................................................................................................................................................TATGATTAATACAGATAA---------------AAGCATTGAAAA..............3012.00200000000000002000
..................................................................................................................................................................................................................................................TATTATATGTTAT-TAAATATAGCCTGA.........................................................................................................2712.00200000000000002000
................................................................................................................................................................................................................................................................................TCAATATC---AACTTATATTTTTACAGA..........................................................................2612.00200000011000000000
..............................................................................................................................................................................................................................................................................................................................TGATTAATACAGATAA---------------AAGCATTGA.................2512.00200000002000000000
.............................................................................................................................................................................................................................................................................................................TATAATGTTTGCCCATATGATTAATA................................................2612.00200000011000000000
....................................................................................................................................................T--CCTT-------TATAAAGTGACAAAGTTGTTAA...............................................................................................................................................................................................2712.00200000011000000000
.......TTTCCTCACAAAGATTTTCGCAATA-------------..........................................................................................................................................................................................................................................................................................................................................2512.00200000020000000000
.........................................................................................TTTTT----TAAGCAGTGGG-----------------------TACTTTTTGT.........................................................................................................................................................................................................................................2612.00200000000000002000
.......TTTCCTCACAAAGATTTTCGCAATA-------------TA........................................................................................................................................................................................................................................................................................................................................2712.00200000000000002000
..................................................................................................................................................................................................................................................................................................................................TAATACAGATAA---------------AAGCATTGAAACCCTA----------2812.00200000000000002000
.TATG--TTTCCTCACAAAGATTTTCGCAATA-------------..........................................................................................................................................................................................................................................................................................................................................2912.00200000020000000000
..............................................................................................................................................................................................................................................................T-TAAATATAGCCTGAAATCAATATC---AAC.........................................................................................2812.00200000010000001000
..............................................................................................................................................................................................................................................................T-TAAATATAGCCTGAAATCAATATC---AA..........................................................................................2712.00200000000000002000
...........................................................................................................................................................................................................................................................TTAT-TAAATATAGCCTGAAATCAATATC---............................................................................................2812.00200000000000020000
..................................................................................................................................................................................................................................................................................................................TGTTTGCCCATATGATTAATACAGA............................................2512.00200000000200000000
..............................................................................................................................................................................................................................................................................................................................TGATTAATACAGATAA---------------AAGCATTGAAACCC............3011.00100000010000000000
.........................................................................................................................................................................................ACAATT----AT-AGGTACAATGAAAAATT................................................................................................................................................................2511.00100000000000001000
.........TCCTCACAAAGATTTTCGCAATA-------------..........................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
.......TTTCCTCACAAAGATTTTCGCAATT-------------..........................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.............................................TAA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTTTT...........................................................................................................................................................................................................................................2811.00100000000000001000
........................................................................................................................................................................................................................................................................................................ACAGATATAATGTTTGCCCATATGATTAA..................................................2911.00100000000000001000
.............................................................................................T----TAAGCAGTGGG-----------------------TACTTTTTG..........................................................................................................................................................................................................................................2111.00100000000000010000
..ATG--TTTCCTCACAAAGATTTTCGCA..........................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
............................................................................................TT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGAT...................................................................................................................................................................................................................................2911.00100000000000001000
........TTCCTCACAAAGATTTTCGCAATA-------------TA........................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................CCATATGATTAATACAGATAA---------------AAGCA.....................2611.00100000010000000000
.....................................................................................................................................................................................TAATACAATT----AT-AGGTACAATGAAAAATT................................................................................................................................................................2911.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................TAATACAGATAA---------------AAGCATTGAAACCC............2611.00100000000000001000
..........................................................................................TTTT----TAAGCAGTGGG-----------------------TACTTTTTGTAAA......................................................................................................................................................................................................................................2811.00100000010000000000
............................................................................................................................................................................................................................................................................................................................TATGATTAATACAGATAA---------------AAGCATTGAA................2811.00100000010000000000
......................TTTCGCAATA-------------TAA----------------------------------------TTTTTT----TAAGCAG..............................................................................................................................................................................................................................................................................2611.00100000000000001000
................................................................................................................................................................................................................................................................................TCAATATC---AACTTATATTTTTACAGAA.........................................................................2711.00100000000010000000
...........................................................................................TTT----TAAGCAGTGGG-----------------------TACTTTTTGTAAA......................................................................................................................................................................................................................................2711.00100000010000000000
............................................................................................TT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGAA...................................................................................................................................................................................................................................2911.00100000000000001000
...................................................................................................................................................................................................................................................................................................TTTTTACAGATATAATGTTTGCCCATATGA......................................................3011.00100000010000000000
....................................................................................................................................................................................................T-AGGTACAATGAAAAATTCCATCAAAG.......................................................................................................................................................2711.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................TACAGATAA---------------AAGCATTGAAACCC............2311.00100000000000001000
......................................................................................................................................................................................AATACAATT----AT-AGGTACAATGAAAAA..................................................................................................................................................................2611.00100000001000000000
........................TCGCAATA-------------TAA----------------------------------------TTTTTT----TAAGCAGT.............................................................................................................................................................................................................................................................................2511.00100000000000001000
.........................................................................................................................................................................................................................ATCAAAGTAAAATACTTTTAATATCTA...................................................................................................................................2711.00100000000000001000
....................................................................................................................................................................................................................................................................................................TTTTACAGATATAATGTTTGCCCATAA........................................................2711.00100000000000001000
........................................................................................TTTTTT----TAAGCAGTGGG-----------------------TACTTTTTGT.........................................................................................................................................................................................................................................2711.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................CAGATAA---------------AAGCATTGAAACCC............2111.00110000000000000000
............................................................................................................................................................................................................................................................TAT-TAAATATAGCCTGAAATCAATAA................................................................................................2611.00100000000000001000
.........TCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------...............................................................................................................................................................................................................................................................................................2611.00100000000000001000
...........................................................................................TTT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGAA...................................................................................................................................................................................................................................3011.00100000000000001000
................................................................................................................................................................................................................................................................................................ATATTTTTACAGATATAATGT..................................................................2111.00100000000001000000
.................................................................................................................................................................................................................................................................................................................ATGTTTGCCCATATGATTAATACAGAA...........................................2711.00100000001000000000
TTATG--TTTCCTCACAAAGATTTTCGCAA.........................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
..............................................................................................................................................................................................................TGAAAAATTCCATCAAAG.......................................................................................................................................................1811.00100010000000000000
..................................................................................................................................................................TATAAAGTGACAAAGTTGTTA................................................................................................................................................................................................2111.00100000010000000000
..................................................................................................TAAGCAGTGGG-----------------------TACTTTTTGTAAAGAA...................................................................................................................................................................................................................................2711.00100000000000010000
........................................................................................................................................................................................................................................................................................................................CCCATATGATTAATACAGATAA---------------AAGCAT....................2811.00100000000000001000
...............................................A----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTTT............................................................................................................................................................................................................................................2511.00100000000000001000
........TTCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------...............................................................................................................................................................................................................................................................................................2711.00100000010000000000
.......................................................................................................................................................CCTT-------TATAAAGTGACAAAGTTGTTAT...............................................................................................................................................................................................2611.00100000010000000000
...TG--TTTCCTCACAAAGATTTTCGCAATA-------------TA........................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
.........TCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------A..............................................................................................................................................................................................................................................................................................2711.00100000000000001000
..........CCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------TT.............................................................................................................................................................................................................................................................................................2711.00100000010000000000
...TG--TTTCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------...............................................................................................................................................................................................................................................................................................3011.00100000000000001000
....................................................................................................AGCAGTGGG-----------------------TACTTTTTGTAAA......................................................................................................................................................................................................................................2211.00100000000000100000
...........................................................................................TTT----TAAGCAGTGGG-----------------------TACTTTTTGTT........................................................................................................................................................................................................................................2511.00100000000000001000
..................................................................................................................................................................TATAAAGTGACAAAGTTGTTAATACAAT.........................................................................................................................................................................................2811.00100000010000000000
........TTCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------T..............................................................................................................................................................................................................................................................................................2811.00100000010000000000
........................................................................................................GTGGG-----------------------TACTTTTTGTAAAGAT...................................................................................................................................................................................................................................2111.00100000000001000000
....................................................................................................................................................................................................................................................................................TATC---AACTTATATTTTTACAGATA........................................................................2411.00100000010000000000
..............................................................................................................................................................................................................................................................T-TAAATATAGCCTGAAATCAATATC---............................................................................................2511.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................TGATTAATACAGATAA---------------AAGCATTGAA................2611.00100000000010000000
...................................................................................................AAGCAGTGGG-----------------------TACTTTTTGTAAAGAT...................................................................................................................................................................................................................................2611.00100000000000001000
..................................................................................................................................................................................................................................................................................................................TGTTTGCCCATATGATTAATACAGAA...........................................2611.00100000010000000000
.........................................................................................................................................................TT-------TATAAAGTGACAAAGTTGTTA................................................................................................................................................................................................2311.00100000010000000000
............................................................................................................................................................................................................................................................TAT-TAAATATAGCCTGAAATCAATA.................................................................................................2511.00100000000000010000
................................................................................................................................................................................................................................................................................TCAATATC---AACTTATATTTTTACAG...........................................................................2511.00100000000000001000
............................................................................................TT----TAAGCAGTGGG-----------------------TACTTTTTGTAAA......................................................................................................................................................................................................................................2611.00100000000001000000
..............................................AA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTTT............................................................................................................................................................................................................................................2611.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................TTGCCCATATGATTAATACAGATAA---------------AAGCA.....................3011.00100000000000001000
.....................................................................................................................................................................................TAATACAATT----AT-AGGTACAATGAAAAA..................................................................................................................................................................2711.00100000010000000000
.............................................................................................T----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGATT--................................................................................................................................................................................................................................2911.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................ATACAGATAA---------------AAGCATTGAAACCCTA----------2611.00100000000000001000
..............................................AA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTT.............................................................................................................................................................................................................................................2511.00100000000000001000
....................................................................................................................................................................................................................................ATACTTTTAATATCTATTA................................................................................................................................1920.50100001000000000000
.......................................................................................................................................................................AGTGACAAAGTTGTA.................................................................................................................................................................................................15200.05100000000001000000
droSec2
TTATG--TTTCCTCACAAAGATTTTCGCAATA-------------TAA----------------------------------------TTTTTT----TAAGCAGTGGG-----------------------TACTTTTTGTAAAGATT--CCTT-------TATAAAGTGACAAAGTTGTTAATACAATT----AT-AGGTACAATAAAAAATTCCATCAAAGTAAAATACTTTTAATATCTATTATATGTTAT-TAAATATAGCCTGAAATCAATATC---AACTTATATTTTTACAGATATAATGTTTGCCCGTATGATTAATACAGATAA---------------AAGCATTGAAACCCTA----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................T-------TATAAAGTGACAAAGTTGTTAATACA...........................................................................................................................................................................................2711.0010010
..............................................................................................................................................AAAGATT--CCTT-------TATAAAGT.............................................................................................................................................................................................................1911.0010100
..................................................................................................................................................................................................................................................................................................ATTTTTACAGATATAATGTT.................................................................2020.5011000
dm3
TTAAT--TTTTCTCA-----------------------------------------------------------------------------------------------------------------------CTTTTTTTAAAGAGC--CCCCAAAGGAATATAATGTGAGAAAGTTTTCGATACAATT----AT-AGGTTCAATGAAAAATTCCATCAAAGTATAATACATTTCATTTTTATTACATGTTAT-TAGATATAGCCTGAAATCAATATC---AAAATATATTTTTACAGATATAATA-----ATAC-AGAATAATACAGATAA---------------TA------GAACACAA----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................TTACATGTTAT-TAGATATAGC.............................................................................................................211155.00155000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000001530000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TTTTTACAGATATAATA-----ATAC-.........................................................211124.00124000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001220000000000000000000000000000
............................................................................................................................................TTAAAGAGC--CCCCAAAGGAAT....................................................................................................................................................................................................................21162.006200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000500000000000000000000000000000000000000000000000000000000000000540000000000000000000000000000
..........................................................................................................................................TTTTAAAGAGC--CCCCAAAGGA......................................................................................................................................................................................................................21161.006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000010000100000000000000000000000000000000000000000000510000000000000000000000100000
........................................................................................................................................................CCCAAAGGAATATAATGTGAGAAAGTT....................................................................................................................................................................................................27157.005700000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000200400000000402131500000000000000000000000000000000000000000000000000000000000000000000000400001100000020000000100002200000
........................................................................................................................................TTTTTTAAAGAGC--CCCCAAAG........................................................................................................................................................................................................................21144.004400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000300000000000000000000000000000000000000000000360000000000000000000000000000
...................................................................................................................................................................................................AT-AGGTTCAATGAAAAATTCC..............................................................................................................................................................21143.004300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000420000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TATTTTTACAGATATAATA-----AT............................................................21143.004300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000430000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TTTACAGATATAATA-----ATAC-AG.......................................................21142.004200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000382000000000000000000000000000
...................................................................................................................................................................................................................................................ATTACATGTTAT-TAGATATAG..............................................................................................................21141.004100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000390000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTACAGATATAATA-----ATAC-AGA......................................................21139.003900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000370000000000000000000000000000
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...............................................................................................................................................AAGAGC--CCCCAAAGGAATATA.................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000
..............A-----------------------------------------------------------------------------------------------------------------------CTTTTTTTAAAGAGC--CCCCA...........................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AATA-----ATAC-AGAATAATACAGA............................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000
............................................................................................................................................................................GAAAGTTTTCGATACAATT----AT-AGGT.............................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000
..................................................................................................................................................................TATAATGTGAGAAAGTTTTCGATA.............................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................TTTACAGATATAATA-----ATAC-AGT......................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000030000000000000000000000000000
..........................................................................................................................................................CAAAGGAATATAATGTGAGAGG.......................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000
..........................................................................................................................................TTTTAAAGAGC--CCCCAAAGGAATATAA................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................TATTTTTACAGATATAATA-----ATAC-AGAA.....................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000001210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TA-----ATAC-AGAATAATACAGATAA---------------TA------GAA...............2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ATACATTTCATTTTTATTACA..............................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
....T--TTTTCTCA-----------------------------------------------------------------------------------------------------------------------CTTTTTTTAAAGAGC--CCC.............................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................TATAATGTGAGAAAGTTTTCGAT..............................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................AT-AGGTTCAATGAAAAATTC...............................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
.....................................................................................................................................................................................................................................................TACATGTTAT-TAGATATAGCCTGAAA.......................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000011200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTTCTCA-----------------------------------------------------------------------------------------------------------------------CTTTTTTTAAAGAGC--................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000003000000000000000000000000000
....................................................................................................................................................................................................................ATTCCATCAAAGTATAATACA..............................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TA-----ATAC-AGAATAATACAGATAA---------------TA------GAACAC............3014.0040000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ATTTTTACAGATATAATA-----ATA...........................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
................................................................................................................................................................................................................................TATAATACATTTCATTTTTATTACATGT...........................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000030010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AAGGAATATAATGTGAGAAAGTTTT..................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTTTCGATACAATT----AT-AGGT.............................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................TTTCGATACAATT----AT-AGGTTCAATGA......................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................TAATGTGAGAAAGTTTTCGATA.............................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000020000000000000000000000100000
.........................................................................................................................................................................TGAGAAAGTTTTCGATACAAT.........................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.........................................................................................................................................................................................................................................................TGTTAT-TAGATATAGCCTGAAATCAA...................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTCTCA-----------------------------------------------------------------------------------------------------------------------CTTTTTTTAAAGAGC--CCCC............................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200000
................................................................................................................................................................................................................................TATAATACATTTCATTTTTATTACATG............................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TAATGTGAGAAAGTTTTCGA...............................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AAAATATATTTTTACAGATAT.......................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
......................................................................................................................................................................................................................TCCATCAAAGTATAATACATTTCATT.......................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000100000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTTCTCA-----------------------------------------------------------------------------------------------------------------------CTTTTTTTAAAGAGC--CCCCA...........................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
................................................................................................................................................................................................................................TATAATACATTTCATTTTTAT..................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
................................................................................................................................................................................................................................................................TAGATATAGCCTGAAATCAATATC---AAAA........................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TAAAGAGC--CCCCAAAGGAATATAAT...............................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CAAAGGAATATAATGTGAGAAAGT.....................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................................................................................................................................................................................................AGATATAGCCTGAAATCAAT..................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000020000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TAATA-----ATAC-AGAATAATACAGATAA---------------TA------..................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TCGATACAATT----AT-AGGTTCAATGAAAAA..................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TTTAAAGAGC--CCCCAAAGGAATATAATG..............................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................TTAT-TAGATATAGCCTGAAATCAATATC---............................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TTTCGATACAATT----AT-AGGTTCAATGAAA....................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TCCATCAAAGTATAATACATTTCATTTT.....................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TTCGATACAATT----AT-AGGTTCA..........................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................TT----AT-AGGTTCAATGAAAAATTCCATCAA.........................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AGC--CCCCAAAGGAATATAATG..............................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................ATACAATT----AT-AGGTTCAATG.......................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
................................................................................................................................................................................................................................................TTTATTACATGTTAT-TAGATAA................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
...................................................................................................................................................................ATAATGTGAGAAAGTTTTCG................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
....................................................................................................................................................................................................................................ATACATTTCATTTTTATTAC...............................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.........................................................................................................................................TTTTTAAAGAGC--CCCCAAAGGA......................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000
...........................................................................................................................................................AAAGGAATATAATGTGAGAA........................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................................................................................................................................................................TGAAAAATTCCATCAAAGTATAATACATT............................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ATATATTTTTACAGATATAAT....................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000
....................................................................................................................................................................................................T-AGGTTCAATGAAAAATTCCATCAAAGTA.....................................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000000010000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TACAATT----AT-AGGTTCAATGAA.....................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
............................................................................................................................................................AAGGAATATAATGTGAGAAAGTTTTCGA...............................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AT-AGGTTCAATGAAAAATTCCATCAAA........................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TTTTACAGATATAATA-----ATAC-A........................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
droEre2
TCAAAACCTTTCTTACAAACATTTTCACATTA-------------TATTGAAAACGTAATTAAAATATATTTTTACCATTGATATCAATATGTACATACATGAAGTGAGTTGAAATCTG-TCTTATTGTATTTATATTCTGTGAACACTGCCCCG-AATAT--------------------------------------------------ATTTCTATT--------------------TCTA---------GT-ACAACTAAGGCTGGAATCAATATT---GGATTTAAATTTTACAGATATAATTTTTGCCCAT-TTATTAATACTGATCGACAAGAAAAGAATTAT-GTAACGAGAACTAA----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................ATGAAGTGAGTTGAAATCT.................................................................................................................................................................................................................................................................1911.0010000010
......................................................................................................................................TATTCTGTGAACACTGCCCCG-AATA.......................................................................................................................................................................................................................2511.0011000000
...................................................................................................ATGAAGTGAGTTGAAATCTG-TCTTATT........................................................................................................................................................................................................................................................2711.0011000000
................................................................................................................................................................T--------------------------------------------------ATTTCTATT--------------------TCTA---------GT-ACAACTAAGGCTG..........................................................................................................2911.0011000000
............................................................................................................................................................................................................................................................................................................................................CGACAAGAAAAGAATTAT-GT......................2011.0010010000
....................................................................................................................................................................................................................................................................................................................................ATACTGATCGACAAGGGC.................................18200.0510000100
droYak3
GAAAGGCTTTTCTTTAAAACATTTTTGCATTAGAAAAGTAAAATATAATTAAAACGGATTTGAAAT--ACTCTTACCATTGATATCAATATCTA----TATGAAGTGAGTTTAAATCTGGCCCCATTATATTTATATTCTGTGAGCATTGCCCCCGAAGAAATATAAAG-------------GATACAATTTGTAATAAGTCGAAATGAAAAATTCTATT--------------------TCTA---------GAATAAAAATAGTATGAAATCAATATC---GAATTACATTTTTACAGATGTAGTTTTTGTCCGG-TAAATGACACGAAACGCTAT-----TAATTAC-GTAACA---ATTAAGTATTGAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................TC---GAATTACATTTTTACAGATGTAGT....................................................................2612.00200000000002
...................................................................................................................................................................................................ATAAGTCGAAATGAAAAATTCT..............................................................................................................................................................2212.00201000010000
...........................................................................................CTA----TATGAAGTGAGTTTAAAT...................................................................................................................................................................................................................................................................2112.00200000020000
.............................................................GAAAT--ACTCTTACCATTGAT....................................................................................................................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................ATAAAG-------------GATACAATTTGTAATAAGT..............................................................................................................................................................................2511.00100000010000
...........................................................................................................................................................................................................................T--------------------TCTA---------GAATAAAAATAGTATGAAA.......................................................................................................2411.00101000000000
.........................................................................................................................................................................................................................ATT--------------------TCTA---------GAATAAAAATAGTA............................................................................................................2111.00101000000000
..............................................................................................................................TATATTTATATTCTGTGAGC.....................................................................................................................................................................................................................................2011.00100000010000
droBia1
AAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTCAATATGCATTATTTGTATT-ATGATATATCCTCGTATCAATACCTTTGAAATACCTTTGTATGGATGTAT----ATGCCATAGGACTATTAC-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGAACACTC----------SizeHit CountTotal NormTotal
No Reads
droRho1
ATTAA-----------------------------------------------AGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTCAACACTC----------SizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 05:22 AM