ID:

dsi_6377

 Coordinate:

3l:8305702-8305851 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_8305883_8305951_-]; CDS [3l_8305852_8305882_-]; exon [3l_8305852_8305951_-]; intron [3l_8304775_8305851_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTTAAAATTGTTAACAAAATGGCCCTGCCGCAAAAGCATTTCAAGAGGGGTGAGTGGGGGCATTTCAAGGTCATCGGGATAGTGACGTTGCAAAAGTTTGCAATTGATTTCATAGTTTTATCTAGACCCCACTTCGAGAGGCGTAAATTACGCAGAGATAGAGATTTAATTTTAGCCCAAGCATAATGGAAAACTTTCCGCTGACGTCACAAATCACCCTTCAACAGGTTCGCCCAAACCGGAGATTCC
**************************************************..((((((((..........(((((.......)))))(((((((....))))))).....((.(((......))))))))))))).....(((..((((((................))))))..)))..........((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 O002
Head
..........GTTAACAAAATGGCCCTG.............................................................................................................................................................................................................................. 18 0 1 12.00 12 11 0 1 0 0 0 0 0 0
.........TGTTAACAAAATGGCCCTG.............................................................................................................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................TGGCCCTGCCGCAAAAGCATTTCAAGA........................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................ATGGCCCTGCCGCAAAAGCATTTCAAGA........................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......AATTGTTAACAAAATGGCCCTG.............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............AACAAAATGGCCCTGCCG........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................GCAAAAGCATTTCAAGAGGGGTGAGTGG................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......ATTGTTAACAAAATGGCCCTGCCGC.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................TGGCCCTGCCGCAAAAGCACTTCAAGA........................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.ATTAAAATTGTTAACAAAAAGGT.................................................................................................................................................................................................................................. 23 3 4 0.25 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GATTAGCCCAAACCGGA...... 17 2 14 0.21 3 0 0 0 0 0 0 1 2 0
...........................................................................................................................................................................................................................CTTCAACGGGTTCGTCC.............. 17 2 6 0.17 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................ACAAACCACCCTTCA.......................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0
...............................................................TCTCAAGGGCATCGGGATAT....................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0
...........TAAACAAAATGTCCCTGACG........................................................................................................................................................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................GAGGCGTAAATTACCCAC.............................................................................................. 18 2 9 0.11 1 0 0 0 0 0 0 0 0 1
...............................................................TTTCATCGTGATCGGGATAG....................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGAATTTTAACAATTGTTTTACCGGGACGGCGTTTTCGTAAAGTTCTCCCCACTCACCCCCGTAAAGTTCCAGTAGCCCTATCACTGCAACGTTTTCAAACGTTAACTAAAGTATCAAAATAGATCTGGGGTGAAGCTCTCCGCATTTAATGCGTCTCTATCTCTAAATTAAAATCGGGTTCGTATTACCTTTTGAAAGGCGACTGCAGTGTTTAGTGGGAAGTTGTCCAAGCGGGTTTGGCCTCTAAGG
**************************************************..((((((((..........(((((.......)))))(((((((....))))))).....((.(((......))))))))))))).....(((..((((((................))))))..)))..........((((....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................AGTGCTTAGCGGGAAGTAGTC...................... 21 3 2 0.50 1 1 0 0
..............................................................................................................................................................................................................CGATGTTTAGTGGAAAGTTG........................ 20 3 8 0.13 1 0 0 1
...............................................................................................................................................................................................................AGTGTTGAGTCGGAAGTT......................... 18 2 10 0.10 1 0 1 0
...............................................................................................................................................................................................................AGTGTTGAGTCGGAAGT.......................... 17 2 16 0.06 1 0 1 0
..................................................................................................................................................................................................................GTCTAGTGGGAAGATG........................ 16 2 20 0.05 1 0 1 0
...................................................................................................................................................................................................GAAGGCGACTGCATTG....................................... 16 2 20 0.05 1 1 0 0
...................................................................................................................................................................................................AAAGACGACTGCTGTGTCT.................................... 19 3 20 0.05 1 0 1 0

Generated: 04/24/2015 at 10:49 AM