ID:

dsi_6375

 Coordinate:

2r:2430223-2430372 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.7 -20.5 -20.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAGTCACACAAGATACCATTCTGGGAATTGGCTAAGGGATTAATATCCAGGTATATATGAATAATTATTTAAAAATGTTTGTATCATGTTATGTTAACAATATTTATTTATTTTGAAAACCTGTTCTTTTGAAGTAAATGTTGTTTTTCCTAAGTTAAAATTATGTAACTTTCCGTCCTTGTATTGTAAATAAGCCATATCCGTTCGTCCGTTCGTCTGTCCAGGGACATCGATGACATCATAAATAAAC
**************************************************....((((((((((.((((....)))).)))).))))))......((((((((((((((.....(((......))).....))))))))))))))......((((((........))))))......(((((.......)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 M025
embryo
..............................................................................................................................................................................................TAAGCCATATCCGTTCGTCCGTTCGTC................................. 27 0 1 2.00 2 1 0 0 0 0 0 1
.............TACCATTCTGGGAATTGGCTAAGGGA................................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGTCTGTCCAGGGACATCGATG............... 22 0 1 1.00 1 0 1 0 0 0 0 0
..........AGATACCATTCTGGGAATTGGCTAAGGG.................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................TGTTGTTTTTCCTAAGTTACAAATA....................................................................................... 25 2 1 1.00 1 0 0 0 1 0 0 0
.....................TGGGAATTGGCTAAGGGATTAATAT............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0
.....................TGGGAATTGGCTAAGGGATTAATATC........................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
.............AACCATTCTGGGAATTGGCTAAGGGA................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTCCAGGGACATCGATGACATCAAA....... 26 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................TGAAGTAAATGTTGTTTTTC..................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................TTTGAAAACCTGTTCTTTTGAAGTAAA................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0
.....................TGGGAATTGGCTAAGGGATTAATATCCA......................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TATCCGTTCGTCCGTTCGTCT................................ 21 0 1 1.00 1 0 0 0 0 0 1 0
..................TTCTGGGAATTGGCTAAGGG.................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................TGAATTATTATTTAAAAA............................................................................................................................................................................... 18 1 7 0.14 1 0 0 0 0 1 0 0
.......................................TTCATATCCCGGTATA................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 2 0 0 0
.........................................................TGAATTATTATTTAAAA................................................................................................................................................................................ 17 1 19 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

TTCAGTGTGTTCTATGGTAAGACCCTTAACCGATTCCCTAATTATAGGTCCATATATACTTATTAATAAATTTTTACAAACATAGTACAATACAATTGTTATAAATAAATAAAACTTTTGGACAAGAAAACTTCATTTACAACAAAAAGGATTCAATTTTAATACATTGAAAGGCAGGAACATAACATTTATTCGGTATAGGCAAGCAGGCAAGCAGACAGGTCCCTGTAGCTACTGTAGTATTTATTTG
**************************************************....((((((((((.((((....)))).)))).))))))......((((((((((((((.....(((......))).....))))))))))))))......((((((........))))))......(((((.......)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
..............................................................................................................AAAACTTTTGGACAAGAAAACTTCAT.................................................................................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0
...............................................................................................................AAACTTTTGGACAAGAAAACTTCAT.................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................ACAGGCCACTGTTGCTACTGTAGTAT....... 26 3 1 1.00 1 1 0 0 0 0 0 0
TTCAGTGTGTTCTATGGTAAGA.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................AATAGGCAAGCAGGCAAGCAGACAGGT........................... 27 1 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................................................................................................TGCGGGGCAGGAACATAACATTTATT......................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................CGGTATAGGCAAGCAGGCAAGCAGA................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................TGCGAGGCAGGAACATAACATTTATT......................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................ATACATTGCGAGGCAGGAACATAACAT.............................................................. 27 2 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................AGACAGGCCACTGTTGCTACTGTAGT......... 26 3 1 1.00 1 0 0 1 0 0 0 0
.TCAGTGTGTTCTATGGTAAGACCCTT............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................ACAAACATAGTACAATACAATTGAT...................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................ACAGACATAGTACAATACAATTGATT..................................................................................................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................AAAACTTTTGGACAAGAAAACTTCATTT................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................AGACAGGCCACTGTTGCTACTGTAGTAT....... 28 3 1 1.00 1 0 1 0 0 0 0 0
.............................................................................AAACATAGTACAATACAATTGATTTT................................................................................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
....................................TCTAATTATAGGTCC....................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 1 0 0 0 0
.........................TTAACCGATGCCTTAATT............................................................................................................................................................................................................... 18 2 18 0.06 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2430173-2430422 + dsi_6375 AAGTCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGGA-----T--TAAT---ATCCAGGTATATA--TGA------------------------------------------------ATAATTATTTAAAAA---TGTTTGTATC--A-----TG--------------------------------------------------------------------------TTATGTTAACAATATTTATTTATTTTG-----------------------------------------------A-----------AA--ACCTGTTCTTTTGA-AG--------------------------------------------T-------------------------------------------------------------------------------------------AAATGTTGTTTTTCCTAA------------------------------------------------------------------------------GTTAAAATTATGTA------------------------------AC-----TTTCCGTCCTTG---------------------------------------------------------------------TATTGTAAAT----------------------------------AAGCCATATCCGTTCGTCCGTTCGTCTGTCC--------AGGGACATCGATGACAT--CATAAATAAAC
droSec2 scaffold_26:60862-61102 + AAGTCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGGA-----T--TAAT---ATCCAGGTATATA--TGA------------------------------------------------ATAATTATTTAAAAA---TGTTTGTATC--A-----TG--------------------------------------------------------------------------TTATGTTAACAATACTTATTTATTTTG-----------------------------------------------A-----------AA--ACATGTTCTTTTGA-AG--------------------------------------------T-------------------------------------------------------------------------------------------AAATGTTGTTTTTCCTAA------------------------------------------------------------------------------GTTATAATTATATA------------------------------AC-----GCTCCGTCCTTG---------------------------------------------------------------------TAAGGC-------------------------------------------ATATCCGTTCGTCCGTTCCTCTGTCC--------AGTGACATCGATGACAT--CATAAATAAAC
dm3 chr2R:1416269-1416457 + AAGTCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGGA-----T--TAAT---ATCCAGGTATATA--TGAAAACAAAA-------------------------------------------ATTATTTAAAAAC--TGTTTGTATA--A-----TG--------------------------------------------------------------------------TAATGTTACCAATATTTATTTAGTTTG-----------------------------------------------G-----------AA--ATTTGTTTTTTTGA-AG--------------------------------------------T-------------------------------------------------------------------------------------------ATATGTTATTTTTCCTAA------------------------------------------------------------------------------GTTATAACTATATA------------------------------T----------TGTCCCCG---------------------------------------------------------------------TATT----------------------------------------------------------------------------------------------------------GTA
droEre2 scaffold_4929:20984716-20984855 - AAGTCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAGTTAGCTAAGGGA-----T--TAAT---ATCCAGGTATATA--TGAAATAAGAA-------------------------------------------ATTATTTAAAATT--TGTTTGTATC--C-----TA--------------------------------------------------------------------------TAATGTAAAAAGAATTTTTTTCTTTTG-----------------------------------------------G-----------GAC-GTTTGTTTTCTTTA-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr2L_random_001:311158-311414 + AAGTCTC------ACAAGATAC-CA--------------------------------TTCTG-----GGAGTTGGCTAAGGGA-----T--TAAT---ATCCAGGTATATATATGAAATCAGAT-------------------------------------------ATTTTTTAAAATT--TGTTTCTATC--A-----TA---------TTA-------------------------------------------------------TA-----TAATGCTAATAATATTCATTTCTTTTG-----------------------------------------------G-----------GT--CTTTGTTCTTGTCA-AG--------------------------------------------T-------------------------------------------------------------------------------------------AAATTGTATTTATCCTAC------------------------------------------------------------------------------GTTG--------TA------------------------------AC-----GCTCAGTACCCG---------------------------------------------------------------------TAGAGAACAAAATTTTTTTATCAGGACTA---------------------CTACCGTTCATTCATTCGTGCATCC--------GATGACATCAAGGACA-------------T
droEug1 scf7180000409759:423829-424094 - TATTTTGT-----ATACTGCA--CA--------------------------------GTCCG-----GTTATAATTAAAAAGC-----T--TAAC---AGTCAAA-ATATA------------------------------------------------------TTTAAACTTTCAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACATCTCAGCATTACAATCACTACACGATATTTACCTATTCTATCAA-------------------------------------------------------------------------------------------------------------------------------------------GAATCTGTTGTGTATCATTTCACGTTCGAA-------CTTGT-----TC--A----TAGGCG-----GAATACGAACGTAAGCAT-----------------------CCAACG---------------------------------TAAGCAAGTTGATTGAGCCATGTTCGTCTGTCCGTCCGTCCGTCCGTCCTTAT--GAACGCTGA-GAT--CTCAGGAACTATA
droBia1 scf7180000302055:18343-18605 + TAGGAAT------TTTAGGT--------------------------------------------------------------T-----T--AAAT---ATTAAAGTAGACT--TGG--------------------------------------AGAATAT---ATAATTATTTACAAAATATACCACTGTT--G-----TA---------TAATT------------------------------------------------------------TAATGATGACAAATTA---------------------ATGTCTC-TTTTTATCCCTTTTTATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTT-----GC--A----GAGGGTGTAATGATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTGTTGATCAGCGCCACTAGACGAGTCGATCTAGCAATGTCCGTCTGTCCGTCCGTCTGTC---------------------------------------
droTak1 scf7180000415376:31973-32232 + CTGTTAT------ACATAAAAA-TC---AACAAATAAC-AGTTATTTTTGACTTTTATTCTA-----AAAATCAAATAAACAA-----A--AATCA-TTAC-----------------------------------------------------GGATTTGTAAACTA--------------------CAA--CGGCTTACAACA-----ATAATGGTG-----------------------TATTTCAAAAAATTTTTGGAC--------------------------------------------------------------------------------------------------------------TCTTCTA-AG--------------------------------------------T-------------------------------------------------------------------------------------------GCATGATTTTTTTGGTAAGAAAAATTTACAATAACAGTTATTTTCGGTCCCTGGATTCGAAACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTACTGTGTGATTCGAATGATT--------CGAAACATCTAAGACAG--TGTA----AAT
droEle1 scf7180000490512:896-1136 + GGTCA-T------GCTAAGTAC-AA--------------------------------TTATG-----A------------------------------------------------AATAAAAATTT-----TTAA--------TCTGTCCTTG-------TGAACTG----------TT--TGTTTTTATT--A-----TT-------------------------------------------------------------------CG-----TTGTTTTAATTTTATTCTTCTTTT----------------------------------TTATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTT-----GC--A----GAGGGTATTATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCC--------------------------------------
droRho1 scf7180000770855:556-856 + AAATTTTTTCAACAAGATATGC-CA--------------------------------TTCCA-----ACATTCTACCA----------C--TATT---TCCCAGGGTT----------------------------------------------------TTGATTAAAAACCGATAAA---TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGATTTTCTCCGGACTTGGGCCTTGTCATACGGGCGTTTTCAAAAAAATGTTTCAA---------------ACGATA----------------------------------------------------------------------------------------------------------------------------------------------TAT--------TT------------------------------AT-----ACCCGTTACTCGTAGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGCGAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT---------------------------------ATAGCCATGTCCGTCTGTCTGTCTGTCTGTCC----GTAT--GAACGCTGA-GAT--CTCGGAAACTATA
droFic1 scf7180000454077:92172-92365 + AAATGTT------AAAATACA---A--------------------------------TTTAG------TCTAC------TTCT-----T--CATG---AGAACCCTGAAAT--GCT------------------------------------------------CTGA--ATGGCTAAT---A--------C--T-----TT---GTATA-------------------------------------------------------------------------------------------------TATAAAAA--CTC-ATTTGATTTATTTTTGCACACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------GTCAACAGGAAAGAACTCTTATTTCAAAATAAATAAGGCATTTTAATTTATAATAAAATAAA-----------------------------A-----ACTTCGTTTTTA---------------------------------------------------------------------TGTTCTAA------------------------------------------------------------------------------------------------------ATA
droKik1 scf7180000302414:478142-478321 - AAATAAT------ATAATTTAT-ATTTAAACAAGAAAAC--------------------C-----------GCTTGAAAAGTCATTCTT--TTAT---ATTTAAATATATA--AAA------------------------------------------------ATAAATTCTAATAAA---TAAAAATAA--CAACCTATA--------------------------------------------------------------------------ATATATATAAAATATTTATATAATAAG-----------------------------------------------A-----------AA--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTTAAATTAATA-------------TTGATTATTTTT--------------------------------------------------------------------------------------------------------------------------------------AATATTAATTTA--------------------------------------TAT
droAna3 scaffold_13099:223073-223282 + CAAAAAA------GCAAGAGTTCTA--------------------------------TCTTGTGACGGAGATATGCCGAGTGA-----CATACAT---ATTCCGATACGGA--C--------------------------------------------------ATTACTTCTCACAAAA--TGTCCTT-----T-----TG--------------------------------------------------------------------------TCATCATACCAATATT----TACCTTG-----------------------------------------------G-----------CA--CCTTTTCCTTTCAAGAGTCAATGAATAAAATTGCTTTTC--------------------------------------------------------------------------------GATCAAAAATATG--------------------------------------------------------------------------------------------------------------------------AATTACATA---------------AATT------------------TTTTTGTTCAAA---------------------------------------------------------------------TAGTTTATTT----------------------------------AA----------------------------------------------------------------GCC
droBip1 scf7180000396730:669189-669331 - TGATCAT------TAAAGTACT-------------------------------------TTG-----GAAAT---------------------AT---ATGCATGTACATA------------------------------------------------------------TTTAAAAT---TATTCATGTT--T-----TA--------------------------------------------------------------------------TTTTTA-AAGGGAAATAGTTTTATTAA-----------------------------------------------A-----------AA--GC-------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------TTTCAA--------AACATTGTTTAGTC------------------------------ATCTGATTTTCTTTCTTTT---------------------------------------------------------------------TATTGCAT------------------------------------------------------------------------------------------------------ACA
dp5 Unknown_group_201:12145-12316 - AATCCCA------ACAAACAAA-T----------------------------------------------------------A-----T--CAGT---ATTTCTGTAGGTA--AAA------------------------------------------------ATAATGA-----------------------------------------------------------------------TATTTCAATAAAATTTCGAAGTTTTTTAATAATGTAATA--AAGAAAACCCATTTTTTTCA-----------------------------------------------A-----------AA--AT-------------------------------------------------------------------------------------------------------------------------------ACTGATTTTTTGATCGTCTCTAGGTAGTGCTTTTTTGTTTCA------------------------------------------------------------------------------ATTATTATTCAATT------------------------------AT-----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC
droPer2 scaffold_1321:1071-1300 + GAATTAA--------TAGGTAA-TG--------------------------------TTTTT-----GCAAAAAAATTAGTAA-----A--TAGC---CTTTAAAAACGTA----------------------------------------------------------TCCTGGGAAC---CACAAACT-TTCTTGCTATATTA-----AGAATGAATCAATTAATGCAAAAAATGTAC-------------------------------------------------------TTCATTTA----------------------------AATCGGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------GTTAAAAAGATATA------------------------------AC-----GGTTTGACTTTT---------------------------------------------------------------------GAAAG-------------------------TTGTTAAGTCGATTCAGTTGAGCGGCTCTGTACAT--------------------AAACATTGCTTACAATATAAA----AAC
droWil2 scf2_1100000004558:556183-556502 + ATTCTGT------ACAATTTAG-AA---------------------------------------------------------------A--TTTT-GTTTCTGAATATAAG--CAACTACAATA---AATTAT---GGAAAATGATTGTCGTGGAG------------------------------------------------------TCAATGAAG-----------------------TATTACAAAGAAGTGTTTAATTGTTTTCG-----TTATGTCATTGATATCCAATTAATTCGAATCTAAAAAAGTTCTC-ATTTAG-TAATTATTATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTT-----GC--A--AAAAGGGTATATTAATTTTGGTCAAAAGTGTGCAACGCATAGAAGGAAGCATTTCCGACCATATAAAGTATATATATTCTTGATCAGCACGACGAGACGAGTTCAAATAGCCATGTCCGTCCGTCCGTCCGTCCGTCC--------------------------------------
droVir3 scaffold_12963:14577989-14578109 - TATTATT------ATTTGATTT------------------------------------TTAG------ACATT------TTCA-----T--TTAT---ATGACGCTATATA--TTT------------------------------------------------CTGATTATTACGAAT---T--------C--A-----AT---TTATA------------------------------------------------------------------TTAAA-AACATATATATGTATTTTTTG-----------------------------------------------A-----------AA--ACTTACACTTTTAA-AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droMoj3 scaffold_6500:3446897-3447075 + AATTATT------AAAAAACAA-AA----------GATT--------------------C-----------A-------------------------TTTT-----------------------------------------------------AGCGTTATAAATTATAACTGAAAAA---TCTTTTTTTT--T-----AA---------TAATT------------------------------------------------------------TCG-----------------TAATTAA-------AAAAAATTTTTTTTTTCGTTTTTTTTAAGT--TTACATTTTTAAATTTTTACTTTTTTTTATTTTTTTTA-AA--------------------------------------------T-------------------------------------------------------------------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTTGTTTCGTTTATCA---------------------------------------ATC
droGri2 scaffold_15081:2397132-2397295 + GAGTAAT------GTAACAGCT-------------------------------------GTG-----GAATGTTTGGAAATGATTACTA--TTAA---GCTTGAAGA----------------------------------------------------------------TGGCATAT---T--------CGTTTTGCAT-----------AACAAAATTATTAATATAATATATATATTTTATTTATATATATTT---------------------------------------------------------------------------------------------TTGAGTTCTTATGAG-----------------T-----------------------------------------------------------------------------------------------------------------------------------------TTTGCTGTCTTTCTAAA------------------------------------------------------------------------------GATAAACTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGTCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGGA-----T--TAAT---ATCCAGGTATATA--TGA------------------------------------------------ATAATTATTTAAAAA---TGTTTGTATC--A-----TG--------------------------------------------------------------------------TTATGTTAACAATATTTATTTATTTTG-----------------------------------------------A-----------AA--ACCTGTTCTTTTGA-AG--------------------------------------------T-------------------------------------------------------------------------------------------AAATGTTGTTTTTCCTAA------------------------------------------------------------------------------GTTAAAATTATGTA------------------------------AC-----TTTCCGTCCTTG---------------------------------------------------------------------TATTGTAAAT----------------------------------AAGCCATATCCGTTCGTCCGTTCGTCTGTCC--------AGGGACATCGATGACAT--CATAAATAAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------AAGCCATATCCGTTCGTCCGTTCGTC...........................................2712.00200100010000000000
...................TAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGGA-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTCC--------AGGGACATCGATG.................2211.00100000000001000000
................AGATAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
............................................................TG-----GGAATTGGCTAAGGGA-----T--TAAT---AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
............................................................TG-----GGAATTGGCTAAGGGA-----T--TAAT---ATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................TGA-AG--------------------------------------------T-------------------------------------------------------------------------------------------AAATGTTGTTTTTC.......................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
...........................................................................................................................................................................................................................................................................................................TTTG-----------------------------------------------A-----------AA--ACCTGTTCTTTTGA-AG--------------------------------------------T-------------------------------------------------------------------------------------------AAA..................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
............................................................TG-----GGAATTGGCTAAGGGA-----T--TAAT---ATCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGTTCGTCCGTTCGTCT..........................................2111.00110000000000000000
.........................................................TTCTG-----GGAATTGGCTAAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
droSec2
AAGTCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGGA-----T--TAAT---ATCCAGGTATATA--TGA------------------------------------------------ATAATTATTTAAAAA---TGTTTGTATC--A-----TG--------------------------------------------------------------------------TTATGTTAACAATACTTATTTATTTTG-----------------------------------------------A-----------AA--ACATGTTCTTTTGA-AG--------------------------------------------T-------------------------------------------------------------------------------------------AAATGTTGTTTTTCCTAA------------------------------------------------------------------------------GTTATAATTATATA------------------------------AC-----GCTCCGTCCTTG---------------------------------------------------------------------TAAGGC-------------------------------------------ATATCCGTTCGTCCGTTCCTCTGTCC--------AGTGACATCGATGACAT--CATAAATAAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....CAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAATTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
dm3
AAGTCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGGA-----T--TAAT---ATCCAGGTATATA--TGAAAACAAAA-------------------------------------------ATTATTTAAAAAC--TGTTTGTATA--A-----TG--------------------------------------------------------------------------TAATGTTACCAATATTTATTTAGTTTG-----------------------------------------------G-----------AA--ATTTGTTTTTTTGA-AG--------------------------------------------T-------------------------------------------------------------------------------------------ATATGTTATTTTTCCTAA------------------------------------------------------------------------------GTTATAACTATATA------------------------------T----------TGTCCCCG---------------------------------------------------------------------TATT----------------------------------------------------------------------------------------------------------GTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................TAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCCAGGTATATA--TGAAAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................CTG-----GGAATTGGCTAAGGGA-----T--TAAT---A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................TAAAAAC--TGTTTGTATA--A-----TG--------------------------------------------------------------------------TAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TATTTAGTTTG-----------------------------------------------G-----------AA--ATTTGTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...TCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TG-----GGAATTGGCTAAGGGA-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AATTGGCTAAGGGA-----T--TAAT---ATCCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAC-CA--------------------------------TTCTG-----GGAATTGGCTAAGGGA-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CTAAGGGA-----T--TAAT---ATCCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droEre2
AAGTCAC------ACAAGATAC-CA--------------------------------TTCTG-----GGAGTTAGCTAAGGGA-----T--TAAT---ATCCAGGTATATA--TGAAATAAGAA-------------------------------------------ATTATTTAAAATT--TGTTTGTATC--C-----TA--------------------------------------------------------------------------TAATGTAAAAAGAATTTTTTTCTTTTG-----------------------------------------------G-----------GAC-GTTTGTTTTCTTTA-A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AAGTCTC------ACAAGATAC-CA--------------------------------TTCTG-----GGAGTTGGCTAAGGGA-----T--TAAT---ATCCAGGTATATATATGAAATCAGAT-------------------------------------------ATTTTTTAAAATT--TGTTTCTATC--A-----TA---------TTA-------------------------------------------------------TA-----TAATGCTAATAATATTCATTTCTTTTG-----------------------------------------------G-----------GT--CTTTGTTCTTGTCA-AG--------------------------------------------T-------------------------------------------------------------------------------------------AAATTGTATTTATCCTAC------------------------------------------------------------------------------GTTG--------TA------------------------------AC-----GCTCAGTACCCG---------------------------------------------------------------------TAGAGAACAAAATTTTTTTATCAGGACTA---------------------CTACCGTTCATTCATTCGTGCATCC--------GATGACATCAAGGACA-------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TATTTTGT-----ATACTGCA--CA--------------------------------GTCCG-----GTTATAATTAAAAAGC-----T--TAAC---AGTCAAA-ATATA------------------------------------------------------TTTAAACTTTCAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACATCTCAGCATTACAATCACTACACGATATTTACCTATTCTATCAA-------------------------------------------------------------------------------------------------------------------------------------------GAATCTGTTGTGTATCATTTCACGTTCGAA-------CTTGT-----TC--A----TAGGCG-----GAATACGAACGTAAGCAT-----------------------CCAACG---------------------------------TAAGCAAGTTGATTGAGCCATGTTCGTCTGTCCGTCCGTCCGTCCGTCCTTAT--GAACGCTGA-GAT--CTCAGGAACTATASizeHit CountTotal NormTotal
No Reads
droBia1
TAGGAAT------TTTAGGT--------------------------------------------------------------T-----T--AAAT---ATTAAAGTAGACT--TGG--------------------------------------AGAATAT---ATAATTATTTACAAAATATACCACTGTT--G-----TA---------TAATT------------------------------------------------------------TAATGATGACAAATTA---------------------ATGTCTC-TTTTTATCCCTTTTTATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTT-----GC--A----GAGGGTGTAATGATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTGTTGATCAGCGCCACTAGACGAGTCGATCTAGCAATGTCCGTCTGTCCGTCCGTCTGTC---------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTGTTAT------ACATAAAAA-TC---AACAAATAAC-AGTTATTTTTGACTTTTATTCTA-----AAAATCAAATAAACAA-----A--AATCA-TTAC-----------------------------------------------------GGATTTGTAAACTA--------------------CAA--CGGCTTACAACA-----ATAATGGTG-----------------------TATTTCAAAAAATTTTTGGAC--------------------------------------------------------------------------------------------------------------TCTTCTA-AG--------------------------------------------T-------------------------------------------------------------------------------------------GCATGATTTTTTTGGTAAGAAAAATTTACAATAACAGTTATTTTCGGTCCCTGGATTCGAAACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTACTGTGTGATTCGAATGATT--------CGAAACATCTAAGACAG--TGTA----AATSizeHit CountTotal NormTotal
No Reads
droEle1
GGTCA-T------GCTAAGTAC-AA--------------------------------TTATG-----A------------------------------------------------AATAAAAATTT-----TTAA--------TCTGTCCTTG-------TGAACTG----------TT--TGTTTTTATT--A-----TT-------------------------------------------------------------------CG-----TTGTTTTAATTTTATTCTTCTTTT----------------------------------TTATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTT-----GC--A----GAGGGTATTATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA----TTCTTGATCAGCATCACTAGTAGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCTGTCC--------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAATTTTTTCAACAAGATATGC-CA--------------------------------TTCCA-----ACATTCTACCA----------C--TATT---TCCCAGGGTT----------------------------------------------------TTGATTAAAAACCGATAAA---TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGATTTTCTCCGGACTTGGGCCTTGTCATACGGGCGTTTTCAAAAAAATGTTTCAA---------------ACGATA----------------------------------------------------------------------------------------------------------------------------------------------TAT--------TT------------------------------AT-----ACCCGTTACTCGTAGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGCGAGAAGGAAGCGTTTCCGACCCTATAAAGTATAT---------------------------------ATAGCCATGTCCGTCTGTCTGTCTGTCTGTCC----GTAT--GAACGCTGA-GAT--CTCGGAAACTATASizeHit CountTotal NormTotal
No Reads
droFic1
AAATGTT------AAAATACA---A--------------------------------TTTAG------TCTAC------TTCT-----T--CATG---AGAACCCTGAAAT--GCT------------------------------------------------CTGA--ATGGCTAAT---A--------C--T-----TT---GTATA-------------------------------------------------------------------------------------------------TATAAAAA--CTC-ATTTGATTTATTTTTGCACACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------GTCAACAGGAAAGAACTCTTATTTCAAAATAAATAAGGCATTTTAATTTATAATAAAATAAA-----------------------------A-----ACTTCGTTTTTA---------------------------------------------------------------------TGTTCTAA------------------------------------------------------------------------------------------------------ATASizeHit CountTotal NormTotal
No Reads
droKik1
AAATAAT------ATAATTTAT-ATTTAAACAAGAAAAC--------------------C-----------GCTTGAAAAGTCATTCTT--TTAT---ATTTAAATATATA--AAA------------------------------------------------ATAAATTCTAATAAA---TAAAAATAA--CAACCTATA--------------------------------------------------------------------------ATATATATAAAATATTTATATAATAAG-----------------------------------------------A-----------AA--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTTAAATTAATA-------------TTGATTATTTTT--------------------------------------------------------------------------------------------------------------------------------------AATATTAATTTA--------------------------------------TATSizeHit CountTotal NormTotal
No Reads
droAna3
CAAAAAA------GCAAGAGTTCTA--------------------------------TCTTGTGACGGAGATATGCCGAGTGA-----CATACAT---ATTCCGATACGGA--C--------------------------------------------------ATTACTTCTCACAAAA--TGTCCTT-----T-----TG--------------------------------------------------------------------------TCATCATACCAATATT----TACCTTG-----------------------------------------------G-----------CA--CCTTTTCCTTTCAAGAGTCAATGAATAAAATTGCTTTTC--------------------------------------------------------------------------------GATCAAAAATATG--------------------------------------------------------------------------------------------------------------------------AATTACATA---------------AATT------------------TTTTTGTTCAAA---------------------------------------------------------------------TAGTTTATTT----------------------------------AA----------------------------------------------------------------GCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGATCAT------TAAAGTACT-------------------------------------TTG-----GAAAT---------------------AT---ATGCATGTACATA------------------------------------------------------------TTTAAAAT---TATTCATGTT--T-----TA--------------------------------------------------------------------------TTTTTA-AAGGGAAATAGTTTTATTAA-----------------------------------------------A-----------AA--GC-------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------------------------------------------TTTCAA--------AACATTGTTTAGTC------------------------------ATCTGATTTTCTTTCTTTT---------------------------------------------------------------------TATTGCAT------------------------------------------------------------------------------------------------------ACASizeHit CountTotal NormTotal
No Reads
dp5
AATCCCA------ACAAACAAA-T----------------------------------------------------------A-----T--CAGT---ATTTCTGTAGGTA--AAA------------------------------------------------ATAATGA-----------------------------------------------------------------------TATTTCAATAAAATTTCGAAGTTTTTTAATAATGTAATA--AAGAAAACCCATTTTTTTCA-----------------------------------------------A-----------AA--AT-------------------------------------------------------------------------------------------------------------------------------ACTGATTTTTTGATCGTCTCTAGGTAGTGCTTTTTTGTTTCA------------------------------------------------------------------------------ATTATTATTCAATT------------------------------AT-----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................TATTTCAATAAAATTTCGAAGTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................TTTCTGTAGGTA--AAA------------------------------------------------ATAATGA-----------------------------------------------------------------------TATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000100
droPer2
GAATTAA--------TAGGTAA-TG--------------------------------TTTTT-----GCAAAAAAATTAGTAA-----A--TAGC---CTTTAAAAACGTA----------------------------------------------------------TCCTGGGAAC---CACAAACT-TTCTTGCTATATTA-----AGAATGAATCAATTAATGCAAAAAATGTAC-------------------------------------------------------TTCATTTA----------------------------AATCGGTAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------GTTAAAAAGATATA------------------------------AC-----GGTTTGACTTTT---------------------------------------------------------------------GAAAG-------------------------TTGTTAAGTCGATTCAGTTGAGCGGCTCTGTACAT--------------------AAACATTGCTTACAATATAAA----AACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATA------------------------------AC-----GGTTTGACTTTT---------------------------------------------------------------------G................................................................................................................2040.251000001
..................................................................................................................................................................................................................................................................................................................................................AAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------GTTAAAAAGATAT........................................................................................................................................................................................................................................1950.201000001
droWil2
ATTCTGT------ACAATTTAG-AA---------------------------------------------------------------A--TTTT-GTTTCTGAATATAAG--CAACTACAATA---AATTAT---GGAAAATGATTGTCGTGGAG------------------------------------------------------TCAATGAAG-----------------------TATTACAAAGAAGTGTTTAATTGTTTTCG-----TTATGTCATTGATATCCAATTAATTCGAATCTAAAAAAGTTCTC-ATTTAG-TAATTATTATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTT-----GC--A--AAAAGGGTATATTAATTTTGGTCAAAAGTGTGCAACGCATAGAAGGAAGCATTTCCGACCATATAAAGTATATATATTCTTGATCAGCACGACGAGACGAGTTCAAATAGCCATGTCCGTCCGTCCGTCCGTCCGTCC--------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATTCTTGATCAGCACGACG..................................................................................26200.7014000140
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCACGACGAGACGAGT..........................................................................26200.20404000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCACGACGAGACGAGTT.........................................................................20200.15303000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATGTCCGTCCGTCCGTCCGTC...........................................25200.15303000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCCGTCCGTCCGT............................................21200.15303000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCCGTCCGTCCGT............................................25200.10200020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCACGACGAG................................................................................24200.10200020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCACGACGAGACGAGT..........................................................................24200.10201010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCATAGAAGGAAGCATT...........................................................................................................................25200.10202000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATAGCCATGTCCGTCCG.....................................................20200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTCAAATAGCCATGTCCG.........................................................22200.05100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATAGCCATGTCCGTCCGT....................................................24200.05100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGCACGACGAGA...............................................................................26200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGACCATATAAAGTATATATAT...................................................................................................25200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACGAGTTCAAATAGCC................................................................20200.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAAGCATTT..........................................................................................................................21200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCCGTCCGTCCGTCC..........................................27200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTCAAAAGTGTGCAACGCA.........................................................................................................................................26200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGCAACGCATAGAAGGAAGCA.............................................................................................................................26200.05100100
droVir3
TATTATT------ATTTGATTT------------------------------------TTAG------ACATT------TTCA-----T--TTAT---ATGACGCTATATA--TTT------------------------------------------------CTGATTATTACGAAT---T--------C--A-----AT---TTATA------------------------------------------------------------------TTAAA-AACATATATATGTATTTTTTG-----------------------------------------------A-----------AA--ACTTACACTTTTAA-AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AATTATT------AAAAAACAA-AA----------GATT--------------------C-----------A-------------------------TTTT-----------------------------------------------------AGCGTTATAAATTATAACTGAAAAA---TCTTTTTTTT--T-----AA---------TAATT------------------------------------------------------------TCG-----------------TAATTAA-------AAAAAATTTTTTTTTTCGTTTTTTTTAAGT--TTACATTTTTAAATTTTTACTTTTTTTTATTTTTTTTA-AA--------------------------------------------T-------------------------------------------------------------------------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTTTTGTTTCGTTTATCA---------------------------------------ATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GAGTAAT------GTAACAGCT-------------------------------------GTG-----GAATGTTTGGAAATGATTACTA--TTAA---GCTTGAAGA----------------------------------------------------------------TGGCATAT---T--------CGTTTTGCAT-----------AACAAAATTATTAATATAATATATATATTTTATTTATATATATTT---------------------------------------------------------------------------------------------TTGAGTTCTTATGAG-----------------T-----------------------------------------------------------------------------------------------------------------------------------------TTTGCTGTCTTTCTAAA------------------------------------------------------------------------------GATAAACTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:21 PM