dsi_6335

GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGTGGACTGGGTAAGTTTGCTCTCGCAGCGGCGTAGAATACACACCGTAGTTTGCGGCCAGAGGCGAATGATTTGGATGGGCCTGCTTAGCGATAAGGTCACACTTGCTAGGGCCATTGCTTACATACCATCACTACCACCAGAGAACACCGCACCTAACGATCACCCAGCATCATTACACGCACCCACTACATGCGAGCAGAACCTAAT ***************************************************************************************((........((..(((.....(((((((((........((((((..((((...........))))))))))......)))))........))))......)))..)).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M025 embryo	SRR902008 ovaries	SRR618934 dsim w501 ovaries	M024 male body	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
....................................................................................................................................................................................CAGAGAACACCGCACCTAAC..................................................	20	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................GTTTGCGGCCAGAGGCGAATGATTTGG......................................................................................................................................	27	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......GTCCAACATCCTGGTGGC..................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGACTG.........................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................GGGCCTGCTTAGCGATAA..................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CACCAGAGAACACCGCACCTAACGAT...............................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................CGATGTGGCGGCCCGTGGACT..........................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................GAGGCGAATGATTTGGATGGGCC...............................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................TTGCTCTCGCAGCGGCGTAGAAT...........................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..GCAAGTCCAACATCCTGGTGGC..................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ATCACTACCACCAGAGAAC..............................................................	19	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGTGG.............................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGGGGACT..........................................................................................................................................................................................................	24	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
................................TGGCGGCCCGTGGACTGGAC......................................................................................................................................................................................................	20	2	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
............................GATGTAGCGGCCCGTGGAAA..........................................................................................................................................................................................................	20	3	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0
.....................................GCCCGTGGACGGGGTGAG...................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	0	0	1	0	0
..............................TGTGACGGCCCGTGAA............................................................................................................................................................................................................	16	2	20	0.10	2	0	0	0	1	0	0	0	0	0	0	1
..........................................................GCTCTCGCAAGGGCGTGGA.............................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	0	0	0	1	0	0
...........................CCTTGTGACGGCCCGTGG.............................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................TGGGAACACCGCACCT.....................................................	16	2	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

CCCGTTCAGGTTGTAGGACCACCGGTGGCTACACCGCCGGGCACCTGACCCATTCAAACGAGAGCGTCGCCGCATCTTATGTGTGGCATCAAACGCCGGTCTCCGCTTACTAAACCTACCCGGACGAATCGCTATTCCAGTGTGAACGATCCCGGTAACGAATGTATGGTAGTGATGGTGGTCTCTTGTGGCGTGGATTGCTAGTGGGTCGTAGTAATGTGCGTGGGTGATGTACGCTCGTCTTGGATTA ************************************************((........((..(((.....(((((((((........((((((..((((...........))))))))))......)))))........))))......)))..)).))***************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
.......................................................................................................................................................................GGCAGTGATGGTGGTC...................................................................	16	1	5	0.20	1	1	0	0	0
............................................................................................................................................TGTGAGCGATCCCGGT..............................................................................................	16	1	5	0.20	1	0	1	0	0
............................................CGGACCCATTCCAACGAGC...........................................................................................................................................................................................	19	3	7	0.14	1	0	0	1	0
......................................................................................................................................................GCCGGTGACAAATGTATGGT................................................................................	20	3	7	0.14	1	0	1	0	0
........GGTTGTAGGACCAAC...................................................................................................................................................................................................................................	15	1	20	0.10	2	1	0	0	1
......................................................................................................................................................................AGGCAGTGATGGTGGTC...................................................................	17	2	20	0.10	2	2	0	0	0
.........................................................................................................................................................................TAGTGATTGTGGTCT..................................................................	15	1	10	0.10	1	0	0	1	0
...............................................................................................................................................................................................CGTGGGTTGCTGGAGGGTCG.......................................	20	3	15	0.07	1	0	0	0	1
.......................................................................................................................................................................GGCAGTGATGGTGGTCC..................................................................	17	2	15	0.07	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:1750958-1751207 -	dsi_6335	GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGTGGACTGGGTAAGTTT---GCTCTCGC--AGCG---------GCG--------------TAGAATA-------CA---CACCGTAGT----------------TTGCGGCCAGAGGC--GAATGATTTGGAT--GGGCCTGCT---------------------T-----------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTAC---ATACC----ATCA-------------------CTACC-----------AC-------------------CAGAGAACACCGCACCTAA--C-GATCACCCAG---------CATCATTACACGC-A---------CCCACTAC-------ATGCGAGCAGAACCTAAT
droSec2	scaffold_6:1938304-1938553 -		GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGTGGACTGGGTAAGTTT---GCTCTCGC--AGCG---------GCG--------------TAGAATA-------CA---CACCGTAGT----------------TTGCGGCCAGAGGC--GAATGATTTGGAT--GGGCCTGCT---------------------T-----------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTAC---ATACC----ATCA-------------------CTACC-----------AC-------------------CAGAGAACACCGCACCTAA--C-GATCACCCAG---------CATCATTACACGC-A---------ACCACTAC-------ATGCGAGCAGAACCTAAT
dm3	chr3R:1829201-1829444 -		GGGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCGGCCCGTGGACTAGGTAAGTTT---GCTCTCGC--AGCG---------GCG--------------TAGAATA-------TA---CACCGTAGT----------------TTGCGGCC--------GAAAGATTTGGAT--GGGCCTGTT---------------------T-----------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTACAACATACC----ATCA-------------------CTAC---------------------------------CAGAGGACACCGCACCTAA--C-GATCACCCAG---------CATCATTACACGC-A---------CCCACTAC-------ATGCGAGCAGAACCTAAT
droEre2	scaffold_4770:2093957-2094188 -		GGGAAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGTGGACTGGGTAAGTTT---GCTCTCGC--ATCG---------TCG--------------CAGAATA------------CAAAGTAGT----------------TTGCGGCCAGAGGA------GATTTGGAT--GGGCCTTCT---------------------------------------------------AGCGCTAAGGTT----ACACTTGCTAGGCCC--ATTGCTTAC---ATACC----ATCA-------------------CCAC-----------------------------------------ACGGCACCTAA--C-GATCACCCAG---------CATCATTACACAC-G---------CCCACTAC-------ATACGAGCAGAACCTAAT
droYak3	3R:17774952-17775199 -		GGGAAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGAGGACTGGGTAAGTTT---GTTCCCGC--ATCG---------TTT--------------TAAGACA------------CAAAGTAGT----------------TCGCAGCCGGAAGA--ATATTATTTGGAC--GGGCCTGCTGGC------------------T-----------------------------GGCTATAAGGTT----ACACTTGCTAGGGAC--ATTGCTTAC---ATACC----ATCA-------------------CTAC---------------------------------TAGAGAACACCGCACTTAA--C-GATCACCCAG---------CATCATTACACAT-A---------CCCACTAC-------TTGCGAGCAGAACCTAAT
droEug1	scf7180000409766:824108-824362 -		GGGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCAGCCCGAGGACTTGGTAAGTTT---GCCGCCAT--ATCG---------GCG--------------TAGTATA------------TCTCGTAGA----------------TTGCGGCCAGTGGATTGAATGTTTTGGAG--GGGCCTGCT---------------------------------------------------AGCGATAAGGAT----ACACTTGCTAGGACC--ATTGCTTAC---ATGCC----ATTA-------------------CTAC---------------------------------AAGAGAAAACCGCACCTAA--CCAATCACCCAC---------CATCATTACACACCA-TACA-CCACCCAAAAC-------ATGCGAGCGAAACCCAAT
droBia1	scf7180000302155:2904219-2904461 +		GGGCAAGTCCAACATCCTGGTGGCCACCGACGTGGCAGCCCGTGGACTGGGTAAGTTT---GCTCCCAC--ACCG---------GCG--------------TAGAGTA------------CCTCGTAGT----------------TTGCGGCCGGAGGAAGGAATGTTGAGGAG--GGGCCTGCT---------------------------------------------------AGCCATAAGGTT----ACACTCGCTAGGGCC--ATTGCTTAC---ATAC-----ATCA-------------------CCAC---------------------------------AGAAGAATACCGCACCTAA--CCGATCACCCA----------CATCATTACACAC-------------CACCACATT----TTGCGAGCAGAACCCG--
droTak1	scf7180000414426:15547-15792 -		GGGCAAGTCCAACATCCTGGTGGCCACTGATGTGGCAGCCCGTGGACTCGGTAAGTTT---GCTCCCAC--ATTG---------GTG--------------TAGAATA------------TCTCGTAGT----------------TTGCGGCCGGAGGAGCGAATGTTTCGGAG--GGGCCTGCT---------------------------------------------------AGCGATAAGATT----ACACTTGCCAGGGCC--ATTGCTTAC---ATACC----ATCA-------------------GTAC---------------------------------AAGAGAAAACTGCACCTAA--CCGATCACCCAC---------CATCATTACACACCA---------CCCACATC-------ATGCGAGCAGAACCTA--
droEle1	scf7180000491278:534553-534814 -		GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCAGCTCGTGGACTGGGTAAGTTT---GCTCCCAT--TTCG---------GCG--------------TAGAAAA-------TA---GCTCGTAGT----------------TTGCGGCCAGATGAGCGAATGTTTTGGAG--GGCCCTGCT---------------------------------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTAC---ATACCCCACATCA-------------------GTAC---------------------------------AAGAGTAAACCGCACCTAA--CCGATCACCCAC---------CATCATTACACACCA-CCCATCCAGCCACCAC-------ATGCGAGCAGCAGCTAAA
droRho1	scf7180000762912:9221-9467 -		GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCAGCCCGTGGACTGGGTAAGTTT---GCTCCCAC--TTCG---------GCG--------------TAGATTA------------CCTCGTAGT----------------TTGCGGCCAGATGAGAGAATGTTTTGGAG--GGCCCTGCT---------------------------------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTAC---ATACC----ATCA-------------------CAAC---------------------------------AAGAGTAAACCGCACCTAA--CCGATCACCCAC---------CATCACTACACATTA---------CCCACCAC-------ATGCGAGCAGAACTTAA-
droFic1	scf7180000453910:173362-173602 -		GGGCAAGTCCAACATCCTGGTGGCCACAGACGTGGCTGCCCGCGGACTGGGTAAGTGT---GCTCCCAC--CTCG---------GTG--------------TGGAATA------------TCTCGTAGT----------------TTGCGGCCAGATGAGCGAATGTTTTGGAG--GGGCCTGCT---------------------------------------------------AGCGATAAGGTT----ACACTTGATAGGGCC--ATTGCTTAC---ATACA----ATTA-------------------CAAC---------------------------------AAGATGAA-ACGCACCTAA--CCGATCACCCC----------CATCATCACACAC-A---------CCCAGCAC-------ATGCGAGCAGAA----AT
droKik1	scf7180000302276:178264-178530 +		GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGTGGACTCGGTAAGTTTTC-GCCC--ACGTGCCA---------GTG--------------TAGAGTA------------CT-----------------------TAGTGG----------AAATGCATTGGAGGGGGGCCTGCT-----------------------GCTAGT------------------TTTTAGAGATAAGGCT----ACACATCCCAGGGCC--ATTGCTTAC---AC-CC----ATCC-------------------ATACCACAAAGACAACAC---------------GT--CC--ATAAACGTCACCTAA--CCGATTCCCATA-AGTCATCACATCACAACACAC-A---------CACACA---TTCACAATGCGAGATGAATTTG--
droAna3	scaffold_13340:18284034-18284284 +		CGGCAAGTCCAACATCCTGGTGGCCACCGACGTGGCAGCCCGAGGCCTGGGTAAGTTC---TTCC--GTGTGTTT---------G------------------GAACGAG-----TA---GTCTGTAGT------------GT-ACTGCGGCCAGATGAAGGAGTGTAGTGGAG--GGGCCTAGT---------------------------------------------------GTCGTTGAGTTCAAGTACGCATCCCA-GACC--ATTGCTTTC---ATACC----ATCC-------------------CGCCC-CCAG----CCACTC----------------------TG--CACCATCTA---------ACCCAC---------CATTGTCACACGA-AC--------CCCCTCAC-------CCTCACCCACACCCTCGC
droBip1	scf7180000396708:5080490-5080748 -		CGGCAAATCCAACATCCTGGTGGCCACCGATGTGGCAGCCAGAGGCCTGGGTAAGTTC---TTTC--GTGGATT---------------------------TGGAACAAGATTGCTA---CTCTGTAGTAGTGGTAGTTGAGTAACTGCGGCCAGATGCAAGAGTGTAGTGGAG--GGGCCTAGA---------------------A-----------------------------ATCGTTGAGTA----------T-CCCAGACC--ATTGCTTTC---ACACC----ACCC-------------------GAACC-TGAACATACCAC-------------------CCGAATG--CACCATCTA---------ATCCAGC--------CATCATTACACCC-A---------GCTA---------------GACCTACACCCAAC
dp5	2:15953890-15954189 +		GGGCAAATCGAACATTCTGGTAGCCACCGATGTGGCGGCCCGTGGTCTGGGTAAGTTT---CCGCC-GTGAGCC---------AG--ACAGCCACGGCACA-------ACAAAGC-ACCCTCTTGCAGT---AGT----------TATTGG-------A----ATGAAAACGAACAAGGTCTCTT----------------------AGAGCATACATAAACAGACACACACATTC-------------------TATAGTAGGGCT--ATTGCTTAT---ACAAA----AACATTCCCAATCCAACCAAACCCACCC-CCCA----TCCTTCCCCAAAATATCACCCACAGA-----AGTTCACGTAA--TAGATCATCCATC--------CATAAGCACACAC-A--------------CAC-------ATGCGAA----------T
droPer2	scaffold_0:4457764-4458059 -		GGGCAAATCGAACATTCTTGTAGCCACCGATGTGGCGGCCCGTGGTTTGGGTAAGTTT---CCGCC-GTGAGCC---------AG--ACAGCCACAGCACA-------ACAAAGC-ACCCTCTTGTAGT---AGT----------TATTGG-------A----ATGAAAACGAACAAGGTCTCTT----------------------AGAGCATAGAAAAACAGACACACACATTC-------------------TATAGTAGGGCT--ATTGCTTAT---ACAAA----AACATTCCCAATCCAACCAAAC----CC-CCCA----TCCATCCCCAAAATATCACTCACAGA-----AGTTCACGTAA--TAGATCATCCATT--------CATAAGCACACAC-A--------------CAC-------ATGCGAA----------T
droWil2	scf2_1100000004943:11462809-11463054 +	dwi_3429	GGGCAAATCAAACATCTTGGTAGCCACCGATGTGGCAGCCCGTGGTTTGGGTAAGTTTCCAGTTTCCAA--ATCGAATGGGGCG--------------------GGTA------------TTTGGGA-------------------------------------------------GATGTTACTATCTGAAGAAGAAGGAACCCTTAGCTCAT------------------ATTT-------------------TGTAGTAGGGCTATATTGCTTAT---ATATC----CTTT-------------------CACCT--------------------------------AAGAGACATCACCACCTATCCC-GAAAACTGTT---------CATTCGCCCACCA-AC--CA-----CCTACAT-------ACACCATCACAAACTTGC
droVir3	scaffold_12822:2074554-2074610 +		CGGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCGGCCCGTGGCTTGGGTAAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:11110086-11110143 -		GGGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCGGCCCGTGGCTTGGGTAAGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14624:3032596-3032661 +		GGGCAAGTCCAACATTCTGGTTGCCACCGATGTGGCAGCCCGCGGCTTGGGTAAGTTT----CTCTTGC--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGTGGACTGGGTAAGTTT---GCTCTCGC--AGCG---------GCG--------------TAGAATA-------CA---CACCGTAGT----------------TTGCGGCCAGAGGC--GAATGATTTGGAT--GGGCCTGCT---------------------T-----------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTAC---ATACC----ATCA-------------------CTACC-----------AC-------------------CAGAGAACACCGCACCTAA--C-GATCACCCAG---------CATCATTACACGC-A---------CCCACTAC-------ATGCGAGCAGAACCTAAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................CAGAGAACACCGCACCTAA--C-............................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GT----------------TTGCGGCCAGAGGC--GAATGATTTGG.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......GTCCAACATCCTGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGACTG................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GGGCCTGCT---------------------T-----------------------------AGCGATAA.............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................C-----------AC-------------------CAGAGAACACCGCACCTAA--C-GAT.........................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................CGATGTGGCGGCCCGTGGACT.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................GAGGC--GAATGATTTGGAT--GGGCC............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TT---GCTCTCGC--AGCG---------GCG--------------TAGAAT......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GCAAGTCCAACATCCTGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................ATCA-------------------CTACC-----------AC-------------------CAGAGAAC...........................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................TGGCGGCCCGTGGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGTGGACTGGGTAAGTTT---GCTCTCGC--AGCG---------GCG--------------TAGAATA-------CA---CACCGTAGT----------------TTGCGGCCAGAGGC--GAATGATTTGGAT--GGGCCTGCT---------------------T-----------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTAC---ATACC----ATCA-------------------CTACC-----------AC-------------------CAGAGAACACCGCACCTAA--C-GATCACCCAG---------CATCATTACACGC-A---------ACCACTAC-------ATGCGAGCAGAACCTAAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................CGATGTGGCGGCCCGTGGACTG................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	4	0
.................................................................................................................................................................GAATGATTTGGAT--GGGCCT...........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...................................................................................................................................................................ATGATTTGGAT--GGGCCTG..........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
........................CACCGATGTGGCGGCCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...........................CGATGTGGCGGCCCGTGGACTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
...........................CGATGTGGCGGCCCGTGGACTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.........................ACCGATGTGGCGGCCCGTGGACTG................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
................................TGGCGGCCCGTGGACTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
........................CACCGATGTGGCGGCCCGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
...........................................................................................................................................................AGGC--GAATGATTTGGAT--GGG..............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
.................................GGCGGCCCGTGGACTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
............................GATGTGGCGGCCCGTGGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
..................................GCGGCCCGTGGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	1	0

dm3

GGGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCGGCCCGTGGACTAGGTAAGTTT---GCTCTCGC--AGCG---------GCG--------------TAGAATA-------TA---CACCGTAGT----------------TTGCGGCC--------GAAAGATTTGGAT--GGGCCTGTT---------------------T-----------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTACAACATACC----ATCA-------------------CTAC---------------------------------CAGAGGACACCGCACCTAA--C-GATCACCCAG---------CATCATTACACGC-A---------CCCACTAC-------ATGCGAGCAGAACCTAAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................CACCGATGTGGCGGCCCGTGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GGTGGCCACCGATGTGGCGGCCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7
........................................................................................................................................................................................................................................................................GCC--ATTGCTTACAACATACC----AT.............................................................................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTAAGTTT---GCTCTCGC--AGCG---------GCG--------------TA..........................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TGGCGGCCCGTGGACTAG...............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................GGCC--------GAAAGATTTGGAT--GGGCCT...........................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................CTGGTGGCCACCGATGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGAT--GGGCCTGTT---------------------T-----------------------------AGGC.................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GCGGCCCGTGGACTAGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CCGCACCTAA--C-GATCACTTT...................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CGGCCCGTGGACTAGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	17	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GCGGCCCGTGGACTAGGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GGGAAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGTGGACTGGGTAAGTTT---GCTCTCGC--ATCG---------TCG--------------CAGAATA------------CAAAGTAGT----------------TTGCGGCCAGAGGA------GATTTGGAT--GGGCCTTCT---------------------------------------------------AGCGCTAAGGTT----ACACTTGCTAGGCCC--ATTGCTTAC---ATACC----ATCA-------------------CCAC-----------------------------------------ACGGCACCTAA--C-GATCACCCAG---------CATCATTACACAC-G---------CCCACTAC-------ATACGAGCAGAACCTAAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................CCGATGTGGCGGCCCGTGGACTGG...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	44.00	44	0	0	0	0	0	0	44
........................CACCGATGTGGCGGCCCGTGGACTGG...............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	3
.........................................GTGGACTGGGTAAGTTT---GCTCTCGC--AT........................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	3
.................................GGCGGCCCGTGGACTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
...........................CGATGTGGCGGCCCGTGGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0
...AAAGTCCAACATCCTGGTGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
........CCAACATCCTGGTGGCCACCGATGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
...........................CGATGTGGCGGCCCGTGGACCT................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
........................CACCGATGTGGCGGCCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGTGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AC-G---------CCCACTAC-------ATACGAGC..........	19	1	1.00	1	0	0	0	0	0	1	0
...........................CGATGTGGCGGCCCGTGGACT.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGACTG................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................C--ATTGCTTAC---ATACC----ATCA-------------------CCAC-----------------------------------------ACG........................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
......GTCCAACATCCTGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................TTGCGGCCAGAGGA------GATTTGG.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................TT---GCTCTCGC--ATCG---------TCG--------------CAGA........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
................................TGGCGGCCCGTGGACTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................ATA------------CAAAGTAGT----------------TTGCGGCCAGAG....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...........................CGATGTGGCGGCCCGTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGTGGACTGG...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................CTTCT---------------------------------------------------AGCGCTAAGGTT----ACAC.................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...AAAGTCCAACATCCTGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...AAAGTCCAACATCCTGGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................ATA------------CAAAGTAGT----------------TTGCGGCCAGAGG...................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
..................................................GTAAGTTT---GCTCTCGC--ATCG---------TCG--------------C...........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0
..........AACATCCTGGTGGCCACCGATGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0

droYak3

GGGAAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGAGGACTGGGTAAGTTT---GTTCCCGC--ATCG---------TTT--------------TAAGACA------------CAAAGTAGT----------------TCGCAGCCGGAAGA--ATATTATTTGGAC--GGGCCTGCTGGC------------------T-----------------------------GGCTATAAGGTT----ACACTTGCTAGGGAC--ATTGCTTAC---ATACC----ATCA-------------------CTAC---------------------------------TAGAGAACACCGCACTTAA--C-GATCACCCAG---------CATCATTACACAT-A---------CCCACTAC-------TTGCGAGCAGAACCTAAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...AAAGTCCAACATCCTGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	1	0	0	0	2	0	0	0	0
.........................ACCGATGTGGCGGCCCGAGGACTG................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................ATAAGGTT----ACACTTGCTAGGGAC--....................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
...........................CGATGTGGCGGCCCGAGGACT.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGAGGACT.................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................A--ATATTATTTGGAC--GGGCCTGCTGGC------------------T-----------------------------G....................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................GTGGCCACCGATGTGGCGGCCCGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................CATTACACAT-A---------CCCACTAC-------TTGCGAGCAGA.......	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......GTCCAACATCCTGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................GTGGCGGCCCGAGGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................CGATGTGGCGGCCCGAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................AGTAGT----------------TCGCAGCCGGAAGA--................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................GGTGGCCACCGATGTGGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................CCACCGATGTGGCGGCCCGAGGACTGG...............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GAAAGTCCAACATCCTGGTGGCCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........AACATCCTGGTGGCCACCGATGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................ATGTGGCGGCCCGAGGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................ATGTGGCGGCCCGAGGACTGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................GTAGT----------------TCGCAGCCGGAAGA--AT..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GAAAGTCCAACATCCTGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......GTCCAACATCCTGGTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................T--------------TAAGACA------------CAAAGTAGT----------------TCGCAGCC........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CA------------CAAAGTAGT----------------TCGCAGCC........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
GGGAAAGTCCAACATCCTGGTGGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGAGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............CCTGGTGGCCACCGATGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........CCAACATCCTGGTGGCCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGAGGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GGGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCAGCCCGAGGACTTGGTAAGTTT---GCCGCCAT--ATCG---------GCG--------------TAGTATA------------TCTCGTAGA----------------TTGCGGCCAGTGGATTGAATGTTTTGGAG--GGGCCTGCT---------------------------------------------------AGCGATAAGGAT----ACACTTGCTAGGACC--ATTGCTTAC---ATGCC----ATTA-------------------CTAC---------------------------------AAGAGAAAACCGCACCTAA--CCAATCACCCAC---------CATCATTACACACCA-TACA-CCACCCAAAAC-------ATGCGAGCGAAACCCAAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGGCAAGTCCAACATCCTGGTGGCCACCGACGTGGCAGCCCGTGGACTGGGTAAGTTT---GCTCCCAC--ACCG---------GCG--------------TAGAGTA------------CCTCGTAGT----------------TTGCGGCCGGAGGAAGGAATGTTGAGGAG--GGGCCTGCT---------------------------------------------------AGCCATAAGGTT----ACACTCGCTAGGGCC--ATTGCTTAC---ATAC-----ATCA-------------------CCAC---------------------------------AGAAGAATACCGCACCTAA--CCGATCACCCA----------CATCATTACACAC-------------CACCACATT----TTGCGAGCAGAACCCG--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGGCAAGTCCAACATCCTGGTGGCCACTGATGTGGCAGCCCGTGGACTCGGTAAGTTT---GCTCCCAC--ATTG---------GTG--------------TAGAATA------------TCTCGTAGT----------------TTGCGGCCGGAGGAGCGAATGTTTCGGAG--GGGCCTGCT---------------------------------------------------AGCGATAAGATT----ACACTTGCCAGGGCC--ATTGCTTAC---ATACC----ATCA-------------------GTAC---------------------------------AAGAGAAAACTGCACCTAA--CCGATCACCCAC---------CATCATTACACACCA---------CCCACATC-------ATGCGAGCAGAACCTA--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCAGCTCGTGGACTGGGTAAGTTT---GCTCCCAT--TTCG---------GCG--------------TAGAAAA-------TA---GCTCGTAGT----------------TTGCGGCCAGATGAGCGAATGTTTTGGAG--GGCCCTGCT---------------------------------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTAC---ATACCCCACATCA-------------------GTAC---------------------------------AAGAGTAAACCGCACCTAA--CCGATCACCCAC---------CATCATTACACACCA-CCCATCCAGCCACCAC-------ATGCGAGCAGCAGCTAAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCAGCCCGTGGACTGGGTAAGTTT---GCTCCCAC--TTCG---------GCG--------------TAGATTA------------CCTCGTAGT----------------TTGCGGCCAGATGAGAGAATGTTTTGGAG--GGCCCTGCT---------------------------------------------------AGCGATAAGGTC----ACACTTGCTAGGGCC--ATTGCTTAC---ATACC----ATCA-------------------CAAC---------------------------------AAGAGTAAACCGCACCTAA--CCGATCACCCAC---------CATCACTACACATTA---------CCCACCAC-------ATGCGAGCAGAACTTAA-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGGCAAGTCCAACATCCTGGTGGCCACAGACGTGGCTGCCCGCGGACTGGGTAAGTGT---GCTCCCAC--CTCG---------GTG--------------TGGAATA------------TCTCGTAGT----------------TTGCGGCCAGATGAGCGAATGTTTTGGAG--GGGCCTGCT---------------------------------------------------AGCGATAAGGTT----ACACTTGATAGGGCC--ATTGCTTAC---ATACA----ATTA-------------------CAAC---------------------------------AAGATGAA-ACGCACCTAA--CCGATCACCCC----------CATCATCACACAC-A---------CCCAGCAC-------ATGCGAGCAGAA----AT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGGCAAGTCCAACATCCTGGTGGCCACCGATGTGGCGGCCCGTGGACTCGGTAAGTTTTC-GCCC--ACGTGCCA---------GTG--------------TAGAGTA------------CT-----------------------TAGTGG----------AAATGCATTGGAGGGGGGCCTGCT-----------------------GCTAGT------------------TTTTAGAGATAAGGCT----ACACATCCCAGGGCC--ATTGCTTAC---AC-CC----ATCC-------------------ATACCACAAAGACAACAC---------------GT--CC--ATAAACGTCACCTAA--CCGATTCCCATA-AGTCATCACATCACAACACAC-A---------CACACA---TTCACAATGCGAGATGAATTTG--	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGGCAAGTCCAACATCCTGGTGGCCACCGACGTGGCAGCCCGAGGCCTGGGTAAGTTC---TTCC--GTGTGTTT---------G------------------GAACGAG-----TA---GTCTGTAGT------------GT-ACTGCGGCCAGATGAAGGAGTGTAGTGGAG--GGGCCTAGT---------------------------------------------------GTCGTTGAGTTCAAGTACGCATCCCA-GACC--ATTGCTTTC---ATACC----ATCC-------------------CGCCC-CCAG----CCACTC----------------------TG--CACCATCTA---------ACCCAC---------CATTGTCACACGA-AC--------CCCCTCAC-------CCTCACCCACACCCTCGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................GTAGTGGAG--GGGCCTAGT---------------------------------------------------GTCGTTG..............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.............ATCCTGGTGGCCACCGACGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............TCCTGGTGGCCACCGACGT................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.GGCAAGTCCAACATCCTGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............CCTGGTGGCCACCGACGT................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.GGCAAGTCCAACATCCTGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....AGTCCAACATCCTGGTGGCCACCGACGT................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................GAAGGAGTGTAGTGGAG--GGGC.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............ATCCTGGTGGCCACCGACG.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................G--GGGCCTAGT---------------------------------------------------GTCGTTGAGT...........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................GATGAAGGAGTGTAGTGGAG--G................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...CAAGTCCAACATCCTGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............TCCTGGTGGCCACCGACGTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

CGGCAAATCCAACATCCTGGTGGCCACCGATGTGGCAGCCAGAGGCCTGGGTAAGTTC---TTTC--GTGGATT---------------------------TGGAACAAGATTGCTA---CTCTGTAGTAGTGGTAGTTGAGTAACTGCGGCCAGATGCAAGAGTGTAGTGGAG--GGGCCTAGA---------------------A-----------------------------ATCGTTGAGTA----------T-CCCAGACC--ATTGCTTTC---ACACC----ACCC-------------------GAACC-TGAACATACCAC-------------------CCGAATG--CACCATCTA---------ATCCAGC--------CATCATTACACCC-A---------GCTA---------------GACCTACACCCAAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGGCAAATCGAACATTCTGGTAGCCACCGATGTGGCGGCCCGTGGTCTGGGTAAGTTT---CCGCC-GTGAGCC---------AG--ACAGCCACGGCACA-------ACAAAGC-ACCCTCTTGCAGT---AGT----------TATTGG-------A----ATGAAAACGAACAAGGTCTCTT----------------------AGAGCATACATAAACAGACACACACATTC-------------------TATAGTAGGGCT--ATTGCTTAT---ACAAA----AACATTCCCAATCCAACCAAACCCACCC-CCCA----TCCTTCCCCAAAATATCACCCACAGA-----AGTTCACGTAA--TAGATCATCCATC--------CATAAGCACACAC-A--------------CAC-------ATGCGAA----------T	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....AATCGAACATTCTGGTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..........................CCGATGTGGCGGCCCGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.....................................................................................................................................GT----------TATTGG-------A----ATGAAAACGAACAAGGT.............................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.............ATTCTGGTAGCCACCGATGTGGCGGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...........................CGATGTGGCGGCCCGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................CGATGTGGCGGCCCGTGGTCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................GCCACCGATGTGGCGGCCCGTGGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CACCCACAGA-----AGTTCACGTA.................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........CGAACATTCTGGTAGCCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........ACATTCTGGTAGCCACCGATGT................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CCAATCCAACCAAACCCACCC-CC................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................CACCGATGTGGCGGCCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGTGGTCTG................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....AATCGAACATTCTGGTAGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0

droPer2

GGGCAAATCGAACATTCTTGTAGCCACCGATGTGGCGGCCCGTGGTTTGGGTAAGTTT---CCGCC-GTGAGCC---------AG--ACAGCCACAGCACA-------ACAAAGC-ACCCTCTTGTAGT---AGT----------TATTGG-------A----ATGAAAACGAACAAGGTCTCTT----------------------AGAGCATAGAAAAACAGACACACACATTC-------------------TATAGTAGGGCT--ATTGCTTAT---ACAAA----AACATTCCCAATCCAACCAAAC----CC-CCCA----TCCATCCCCAAAATATCACTCACAGA-----AGTTCACGTAA--TAGATCATCCATT--------CATAAGCACACAC-A--------------CAC-------ATGCGAA----------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......ATCGAACATTCTTGTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
........CGAACATTCTTGTAGCCACCGATGT................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........CGAACATTCTTGTAGCCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droWil2

GGGCAAATCAAACATCTTGGTAGCCACCGATGTGGCAGCCCGTGGTTTGGGTAAGTTTCCAGTTTCCAA--ATCGAATGGGGCG--------------------GGTA------------TTTGGGA-------------------------------------------------GATGTTACTATCTGAAGAAGAAGGAACCCTTAGCTCAT------------------ATTT-------------------TGTAGTAGGGCTATATTGCTTAT---ATATC----CTTT-------------------CACCT--------------------------------AAGAGACATCACCACCTATCCC-GAAAACTGTT---------CATTCGCCCACCA-AC--CA-----CCTACAT-------ACACCATCACAAACTTGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................CACCGATGTGGCAGCCCGTGGTTTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	0	1	0
.....AATCAAACATCTTGGTAGCCACCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................TCAT------------------ATTT-------------------TGTAGTAGGGCT......................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
..........................CCGATGTGGCAGCCCGTGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................TCAT------------------ATTT-------------------TGTAGTAGGGC.......................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................GTTACTATCTGAAGAAGAAGG.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
......ATCAAACATCTTGGTAGCCACCGATGT................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..............TCTTGGTAGCCACCGATGT................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............CATCTTGGTAGCCACCGATGTGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
............................GATGTGGCAGCCCGTGGTTTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................GTTACTATCTGAAGAAGA............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
GGGCAAATCAAACATCTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
....AAATCAAACATCTTGGTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
........................CACCGATGTGGCAGCCCGTGGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................GTTACTATCTGAAGAAGAAG..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.........................ACCGATGTGGCAGCCCGTGGTTTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.....AATCAAACATCTTGGTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
....AAATCAAACATCTTGGTAGCCACCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................GAAGAAGGAACCCTTAGCTC.............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0

droVir3

CGGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCGGCCCGTGGCTTGGGTAAGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................GGTGGCCACCGATGTGGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGCAAGTCCAACATTCTGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGCTTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	28	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGTGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGCTTG................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATTCTGGTGGCCACCGATGTGGCGGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TGGCGGCCCGTGGCTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATTCTGGTGGCCACCGATGTGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGCTTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GTGGCGGCCCGTGGCTTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................GGTGGCCACCGATGTGGCGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CGATGTGGCGGCCCGTGGCTTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGTGGCTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TTCTGGTGGCCACCGATGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATTCTGGTGGCCACCGATGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGGTGGCCACCGATGTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCGGCCCGTGGCTTGGGTAAGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................CACCGATGTGGCGGCCCGTGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.......TCCAACATTCTGGTGGCCACCG....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...........ACATTCTGGTGGCCACCGATGT................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................CCGATGTGGCGGCCCGTGGCTTGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.................TGGTGGCCACCGATGTGGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............TTCTGGTGGCCACCGATGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........AACATTCTGGTGGCCACCGATGTGGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.............ATTCTGGTGGCCACCGATGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................ATGTGGCGGCCCGTGGCTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
.........................ACCGATGTGGCGGCCCGTGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
.........................ACCGATGTGGCGGCCCGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.....AGTCCAACATTCTGGTGGCCACCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................CGATGTGGCGGCCCGTGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................ACCGATGTGGCGGCCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........AACATTCTGGTGGCCACCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................CACCGATGTGGCGGCCCGTGGCTTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................CTGGTGGCCACCGATGTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	1	0	0	0	0	0

droGri2

GGGCAAGTCCAACATTCTGGTTGCCACCGATGTGGCAGCCCGCGGCTTGGGTAAGTTT----CTCTTGC--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-22.4	-22.4	-22.4	-22.3

dsi_6335

3r:1751008-1751157 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads