ID:

dsi_6334

 Coordinate:

node_72290:6770-6919 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCCAGACCCATACTATATTTTTTAAGTCGTGGTATGCTTGTTTGTATTGAAGTGTAATTAGATAACAAAAAGCCCATTTTTTTTACCGTCTACATATGGTATTCGCCATTCCACTACCTCCTGGTGCGTTTCGTCACCACGTGGACTACCGTAATATAACATTTTTTTATCTAATACTTTTCATTTTCTTTGTTTTGCAGTCGGGATATTTAGATGTTGTTGTACCTCCAGATATTTTAAACCACCCAGA
************************************************************************************************************.(((((.......(((((((...)).))))).))))).............................**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR902008
ovaries
 GSM343915
embryo
 M024
male body
..............................................................................................................................................................................................................TATTTAGATGTTGTTGTACCTCCAGA.................. 26 0 1 7.00 7 6 0 1 0 0 0 0 0 0 0
......................................TGTTTGTATTGAAGTGTAATTAGA............................................................................................................................................................................................ 24 0 1 7.00 7 2 3 2 0 0 0 0 0 0 0
....................................................................................................................................................................................TCATTTTCTTTGTTTTGCAGTCGGGA............................................ 26 0 1 6.00 6 3 2 1 0 0 0 0 0 0 0
..........TACTATATTTTTTAAGTCGTGGTA........................................................................................................................................................................................................................ 24 0 1 5.00 5 4 0 1 0 0 0 0 0 0 0
......................TAAGTCGTGGTATGCTTGTTTGTATT.......................................................................................................................................................................................................... 26 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0
..................................TGCTTGTTTGTATTGAAGTGTAATTAGA............................................................................................................................................................................................ 28 0 1 4.00 4 2 0 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................CGGGATATTTAGATGTTGTTGTACC........................ 25 0 1 4.00 4 1 2 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTTGTACCTCCAGATATTTTAAACC....... 26 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0
......................TAAGTCGTGGTATGCTTGTTTGTAT........................................................................................................................................................................................................... 25 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTCATTTTCTTTGTTTTGCAGTCGGGA............................................ 27 0 1 3.00 3 2 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TGCAGTCGGGATATTTAGATGTTGTT............................. 26 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................TTTGCAGTCGGGATATTTAGATGT................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
......................TAAGTCGTGGTATGCTTGTTTGTATTGA........................................................................................................................................................................................................ 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TACCTCCAGATATTTTAAACCACCCAGA 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGGGATATTTAGATGTTGTTGTACCTC...................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............TATTTTTTAAGTCGTGGTATGCT.................................................................................................................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.............TATATTTTTTAAGTCGTGGTATGCT.................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGTTTTGCAGTCGGGATATTTAGATGT................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGTCGGGATATTTAGATGTTGT.............................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGTTTTGCAGTCGGGATATTTAGA.................................... 24 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
............................................................................................................TTCCACTACCTCCTGGTGCGTTTCGTC................................................................................................................... 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
..................................TGCTTGTTTGTATTGAAGTGTAATT............................................................................................................................................................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TTTTGCAGTCGGGATATTTAGATGT................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGGTGCGTTTCGTCACCACGTGGACTA...................................................................................................... 27 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................TGCAGTCGGGATATTTAGATGTTG............................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TAGATGTTGTTGTACCTCCAGATA................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGTTGTTGTACCTCCAGATATTTTAA.......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGTACCTCCAGATATTTTAAACCACCCAGA 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCATTTTCTTTGTTTTGCAGTCGGGATA.......................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGTTGCGTTTCGTCACCACGTGGACTA...................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTCTTTGTTTTGCAGTCGGGATATT........................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGGGATATTTAGATGTTGTTG............................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................TTTAAGTCGTGGTATGCTT................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................TACCGTAATATAACATTTTTTTATCTAA............................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................TTTAAGTCGTGGTATGCTTGTTTGTA............................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GTCGGGATATTTAGATGTTGTTGTACC........................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GTATCTAATACTTTTCATTTTCTTTGTT........................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................TTTTAAGTCGTGGTATGCTTGTTTGTA............................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................AAGTCGTGGTATGCTTGTTTGTATT.......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTTATCTAATACTTTTCATTTTCTTTGTT........................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................TTTTTTACCGTCTACATATGGTATT................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TATTTAGATGTTGTTGTACCTCCAGAT................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTTTGCAGTCGGGATATT........................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................AGTCGTGGTATGCTTGTTTGTA............................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................CTGGGTGCGTTTCGTCACCACGTG........................................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................TGGTGCGTTTCGTCACCACGTGGACT....................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TGCGTTTCGTCACCACGTGGACTACCG................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................TTAAGTCGTGGTATGCTTGTTTGTAT........................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGTCGGGATATTTAGATGTT................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............TATTTTTTAAGTCGTGGTATGCTT................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............TATTTTTTAAGTCGTGGTATG...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................TTTTTTAAGTCGTGGTATGCTTGT................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................TTGAAGTGTAATTAGATAACAAAA.................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................TTAAGTCGTGGTATGCTTG.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................TGCGTTTCGTCACCACGTGGACTAC..................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTGTTTTGCAGTCGGGATATTTAGAA................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................TTCATTTTCTTTGTTTTGCAGTCGGG............................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ATCTAATACTTTTCATTTTCTTTGTTT....................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTGCAGTCGGGATATTTAGATGTTGT.............................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................TGTTTGTATTGAAGTGTAATTAGAT........................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........TACTATATTTTTTAAGTCGTGGTATGC..................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTGTTTTGCAGTCGGGA............................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................TGCGTTTCGTCACCACGTGGACTACCGTA................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................TATTGAAGTGTAATTAGATAACAAAA.................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TGGTGCGTTTCGTCACCACGTGGAC........................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCTTTGTTTTGCAGTCGGGATATTTA...................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTGCAGTCGGGATATTTAGATGTTGTT............................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................TTCCACTACCTCCTGGTGCGTTTCG..................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................CGTTTGTATTGAAGTGTAATTAGAA........................................................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TAATACTTTTCATTTTCTTTGTTT....................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............TATATTTTTTAAGTCGTGGTATGCTA................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TACCTCCTGGTGCGTTTCGTCACCACGT............................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................TTGTTTGTATTGAAGTGTAATTAGA............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TAGATGTTGTTGTACCTCCAGATATT.............. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................CGGGATATTTAGATGTTGTTGTACCTCC..................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTCTTTGTTTTGCAGTCGGGATATTTAGA.................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................AGTCGTGGTATGCTTGTTTGTATTGA........................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGTTGTTGTACCTCCAGATATTTT............ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................AGTCGTGGTATGCGT................................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TGAGATATGTAGATGTTGTTGT........................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................TATTTTAAACTAGCCAGA 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0
.......................................................AATTAGATAACTGAAAGC................................................................................................................................................................................. 18 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................ATGGACTACCGTGATATGA........................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................CATGGACTACCGTGATATG............................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0
......................TCAGTCGTGGTATGCGTA.................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGGTCTGGGTATGATATAAAAAATTCAGCACCATACGAACAAACATAACTTCACATTAATCTATTGTTTTTCGGGTAAAAAAAATGGCAGATGTATACCATAAGCGGTAAGGTGATGGAGGACCACGCAAAGCAGTGGTGCACCTGATGGCATTATATTGTAAAAAAATAGATTATGAAAAGTAAAAGAAACAAAACGTCAGCCCTATAAATCTACAACAACATGGAGGTCTATAAAATTTGGTGGGTCT
****************************************************************************.(((((.......(((((((...)).))))).))))).............................************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M023
head
 SRR902008
ovaries
 GSM343915
embryo
................................................................................................................................................................................................................................GGAGGTCTATAAAATTTGGTG..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAGCCCCATGAATCTACAA................................ 19 3 10 0.40 4 0 4 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCAGCCCTAAAAATC..................................... 15 1 8 0.25 2 0 0 1 0 1 0 0 0 0
...................................................................................ATGACAGATGTAGACCA...................................................................................................................................................... 17 2 10 0.20 2 2 0 0 0 0 0 0 0 0
.............................................................................................................CAGTGATGGAGGACCACG........................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0
...TCTGGGAATGCTATAAAAAGT.................................................................................................................................................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................AATGCTGCACCTGATGG.................................................................................................... 17 2 6 0.17 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................ATGGCGCACCTGATGGC................................................................................................... 17 2 7 0.14 1 0 0 0 1 0 0 0 0 0
.................AAAAAATTCAGGACCA......................................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 1 0 0 0 0 0
AGGTCGGGGTATGCTATAT....................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0
........................................................AAATCTATTGTTTTTC.................................................................................................................................................................................. 16 1 15 0.07 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................AGCAATGCCGCACCTGATG..................................................................................................... 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0
...............................................................................................................GTGATGGAGGGGCTCGCA......................................................................................................................... 18 3 17 0.06 1 0 1 0 0 0 0 0 0 0
........................................................................................................CCTTAAGGTGATGGAG.................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0
............................................................................................................AAGGTGATGCAGGGCCCC............................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................CAAATGTGCACCTGATGG.................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................AGCCCCATGAATCTAC.................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................................................................................................AAGGGGTTAGTTGATGGAG.................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................................TCAAAAAATAGATTAGGA........................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.........................................................................................................AGTAAGGTGATGGACGACT.............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
............................................................................................................................ACGCAAAGTAGTGGAGCAG........................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_72290:6720-6969 - dsi_6334 TCCA-------GACCCATACTATATTTTTTAAGTCGTGGTATGCTT----GT------------------TTGTATTGAAG----------TGTAATTA----GATAACAAAAAGCCCATTTTT--TTTACCGTCTACATATGGTATTCGCCATTCCACTACCTCCT---------------------GGTGCGTTTCGTCACCACGTGGACTACCGTA------A---------------TA--------TA--ACATT--------------TTTTTA-----------TCTA--AT-----------ACTTTTCATT----TTCTTT---GTTTTGCAGTCGGGATATTTAGATG---TTGTTGTACCTCCAGA-TATTTTAAACCACCCAGA
droSec2 scaffold_61:167481-167731 - TCCA-------GACCCATACTATATTTTTTAAGTCGTGGTATGCTT----GT------------------TTGTATTGAAG----------TGTAATTA----GATAACAAAAAGACCATTTTTT-TTTACCGTCTACATATGGTATTCGCAATTCCACTACCTCCT---------------------GGTGCGTTTCGTCACCACGTGGACTACCGTA------A---------------TA--------TA--ACATT--------------TTTTTA-----------TCTA--AT-----------ACTTTTCATT----TTCTTT---GTTTTGCAGTCGGGATATTTAGATG---TTGTTGTACCTCCAGA-TATTTTAAACCACCCAGA
dm3 chrU:72559-72773 + TCCT-------AACCCATTCTATATTTTTTAAGCCTTGGTATGCGT----GA------------------TTGTATTAAAG----------TATAATTA----GATATA-AAAAGCCCATTTTTA-TTTA-----------------------------------CT---------------------GATGCGTTTCATCACCACGTGGAGTACCGTA------A---------------TT--------TA--AAATT--------------CTGTTA-----------TCTA--AT-----------GCTTTTTATT----TTCTTT---GTTTTGCAGTCCGGATATTTAGATG---TTGTTGTACCTCCAGA-TATTTTAAACCACCCAGA
droEre2 scaffold_4845:1247474-1247723 - TCTA-------TTTTCTTTTTTTTTTTTTTAGTTTTTTTTTTGCC-----GT------------------TTG-ATTGGGG----------TGTAATCG----AATGAT-AAAAGCAAATTTTTA-TTTACCGTCTATATATGGTAATCGCCTTCGCACACACTCGT---------------------GGTTC----------------------CAAA------AATTAAACTTTAA-AAATTAATTATTAAACATTTT--------------AATTTA-----------TCTA--AT-----------GCCTTTCATT----ATCTTT---GTTTTGCAGTCTGGATATTTAGATG---TTGTTGTACCTCCTGA-TATTTTAAACCATCCAGA
droYak3 v2_chrUn_001:549864-550039 + GGCA-------A----------------------------------------------------------------------------------------------------------TTTTTTA-TTTACCGTCTAT--ATAGTATTCGCCT------------CT---------------------TGTGCGTTTAGTTTCCACTA-----TCCGTCCATAGTGATTGAGCTTCAAGAAACTAATT------------------------------------------G---A--T-----------TTTTTC-TATATAAAATCTTT---GTCTTGCAGTCTGGATATTTAGATG---TTGTTGTACCTCCAGA-TATTTTAAACCATCCAGA
droEug1 scf7180000409608:16735-16841 + TAAC-------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTCGGTTAAAACTTTACATTT-----------G--C-----------ATCTT-ATATT----TTATGT---GTTTTGCAGTCCGGGTACTTAGATG---TTGTGGTTCCGCCAGA-TATTTTAAACCATCCAGA
droBia1 scf7180000301634:4930-5153 - CCCA-------CACCAATTGGTCTGTTTTCAAGTCTTTGTATGCAATTCTTTTAGTTCAC-------------------GA----------AACTATCG----GACGAT-TACAGTTGATTTTCATTTCTTCGTGTATGTATGATAGTCACCTTCGCACACCCTCCT---------------------GGTGCGCTTCGTCTCTACGTTGACTGCTGTCCACAG-----------------------------------T--------------GATTTA-----------TGTA--TT-----------AATA---------TATTTTTGTATTTATG-TATTAATGTATTTATGTA---TTTTTGTATTT------------------------
droTak1 scf7180000410935:1658-1927 - TCCC-------AATTCAATTGATTTTCTTAAAGTCTTGGTATCCAATCCCGTTAGTTTTTGGGATACCTTTCG-ATTGGTATATCACTCATTATGATCG----GACCAT-CACAGCAGATTTTCAATTCTGTGGCTATATATAGTAGTCGCTTTTGCACACTCTCCT---------------------GGTGCGCTTCGTCACTACATGGACTGCCGTCCATAG---------------------------------------------------TGATA-----------TTTA--AT-----------ACTTC-TGTT----GAAATA---GTTACGCTTACGGGATGTTTGTATTTTGTTTTTGTATCTTGAGCCTATTTTTAA---------
droEle1 scf7180000490205:17969-18030 + TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---GTTTTGCAGTCTGGATTCTTAGATG---TTGTTGTGCCGCCAGA-TATTTTAAACCACCCAGA
droRho1 scf7180000763918:11798-11906 - TTTT-------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------A---------------GC--------TA--A-AAC--------------TTACCATTAACCAGTTG---A--C-----------ATCTT-AAACA----TTGTAT---GCTTTGCAGTCTGGACACTTAGATG---TTGTTGTGCCGCCCGA-TATCTTAAGCCATCCAGA
droFic1 scf7180000454157:53215-53276 + TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTTTACAGTCTGGATACCTAGATG---TTGTTGTGCCACCAGA-TATTTTAAACGACCCAGA
droKik1 scf7180000298510:3357-3436 + ATCT-------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------AATTTTTTTT----TTTG-----CTGTTTCAGTCTGGACATTTAGATG---TTGTTGTACCACCAGA-TATTATGAACCACCGAGA
droAna3 scaffold_13230:3178001-3178105 - AACC-------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------TTTATA-----------TCTA--AAATAAATTTTA-GCTTTTCGTT---TGGCTTTG--TTTTTTCAGTCAGGGTATTTGGATG---TGGTTGTTCCACCAGA-TATTCTTAACCACCCGAC
droBip1 scf7180000395050:6480-6541 - TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTTTTCAGTCAGGATATTTGGATG---TGGTTGTTCCACCAGA-TATTCTTAACCACCCAAC
dp5 Unknown_group_221:17280-17345 + CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTTTCGCAGTCAGGCTATTTAGATG---TTGTTGTGCCACCGGA-TATTCTAAATCACCCAGA
droPer2 scaffold_16:67310-67375 + CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTTTCGCAGTCAGGCTATTTAGATG---TTGTTGTGCCACCGGA-TATTCTAAATCACCCAGA
droWil2 scf2_1100000004590:29639-29890 + TCAAGCACATCAACCTTTTTTTTTTTTTTTAAATTATAGTT------------------------------TCCATTGAAT----------TGAAATTAATCTTATATA-AAAGTC-----------------------------TCTGTCCTTCTCACTCTCTCCTCCTTATTTCCCTCCCTGTCCCGCTGGGCCTCTTCA---------------TCCGTAGTTATTTAATTCGGGTAATTAAATTGTCGGTCAAATT--------------TTATAA-----------TTGA--AA-----------ACTTTTCATT----TTCATT---CTTTTGTTTTGTTGTTGTTTTTTTT---TTTTTGTTTGATTAGA-TATGTTGA----------
droVir3 scaffold_12963:14048844-14048918 - AATA-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGCA----------TTGTCTTTTTACAGTCTGGCTATTTAGATG---TCGTTGTTCCACCGGA-CATTCTCTACCATCCCGA
droMoj3 scaffold_6500:29588037-29588144 - TATG-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT--------------TTTTAT-----------TCTATTTAATAAAGTTTG-TATTAATGTC----TGAAAT---GTTTTACAGTCGGGATATTTAGATG---TTGTGGTTCCACCGGA-CATCCTAAACCACCCTGA
droGri2 scaffold_15126:1798886-1798986 + ATCG-------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------A---------------AA--------TA--A-ATT--------------GTGTTA-----------TTAA--TT-----------ATTGCTTATG----T----TGTCCATTTACAGTCTGGCTATTTAGATG---TTGTGGTGCCACCGGA-TATTCTCAATCATCCCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCCA-------GACCCATACTATATTTTTTAAGTCGTGGTATGCTT----GT------------------TTGTATTGAAG----------TGTAATTA----GATAACAAAAAGCCCATTTTT--TTTACCGTCTACATATGGTATTCGCCATTCCACTACCTCCT---------------------GGTGCGTTTCGTCACCACGTGGACTACCGTA------A---------------TA--------TA--ACATT--------------TTTTTA-----------TCTA--AT-----------ACTTTTCATT----TTCTTT---GTTTTGCAGTCGGGATATTTAGATG---TTGTTGTACCTCCAGA-TATTTTAAACCACCCAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................TATTTAGATG---TTGTTGTACCTCCAGA-..................2617.00700000000160000000
.............................................T----GT------------------TTGTATTGAAG----------TGTAATTA----GA...................................................................................................................................................................................................................................................................................................2417.00700000003220000000
...........................................................................................................................................................................................................................................................................................................................TCATT----TTCTTT---GTTTTGCAGTCGGGA................................................2616.00600000002130000000
.................TACTATATTTTTTAAGTCGTGGTA...................................................................................................................................................................................................................................................................................................................................................................2415.00500000000140000000
.............................TAAGTCGTGGTATGCTT----GT------------------TTGTATT...............................................................................................................................................................................................................................................................................................................................2614.00400000001030000000
.........................................TGCTT----GT------------------TTGTATTGAAG----------TGTAATTA----GA...................................................................................................................................................................................................................................................................................................2814.00400000010120000000
.......................................................................................................................................................................................................................................................................................................................................................CGGGATATTTAGATG---TTGTTGTACC.........................2514.00400000002110000000
..........................................................................................................................................................................................................................................................................................................................................................................TGTTGTACCTCCAGA-TATTTTAAACC.......2613.00300300000000000000
.............................TAAGTCGTGGTATGCTT----GT------------------TTGTAT................................................................................................................................................................................................................................................................................................................................2513.00300000002010000000
..........................................................................................................................................................................................................................................................................................................................TTCATT----TTCTTT---GTTTTGCAGTCGGGA................................................2713.00300000010020000000
.................................................................................................................................................................................................................................................................................................................................................TGCAGTCGGGATATTTAGATG---TTGTT..............................2612.00200000010010000000
...............................................................................................................................................................................................................................................................................................................................................TTTGCAGTCGGGATATTTAGATG---T..................................2412.00200000002000000000
.............................TAAGTCGTGGTATGCTT----GT------------------TTGTATTGA.............................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
...............................................................................................................................................................................................................................................................................................................................................................................TACCTCCAGA-TATTTTAAACCACCCAGA2812.00200000001010000000
.......................................................................................................................................................................................................................................................................................................................................................CGGGATATTTAGATG---TTGTTGTACCTC.......................2712.00200000000020000000
......................TATTTTTTAAGTCGTGGTATGCT...............................................................................................................................................................................................................................................................................................................................................................2312.00200000001010000000
....................TATATTTTTTAAGTCGTGGTATGCT...............................................................................................................................................................................................................................................................................................................................................................2512.00200000000020000000
.........................................................................................................................................................................................................................................................................................................................................T---GTTTTGCAGTCGGGATATTTAGATG---T..................................2712.00200000002000000000
................................................................................................................................................................................................................................................................................................................................................TTGCAGTCGGGATATTTAGATG---TTGT...............................2612.00200000002000000000
.........................................................................................................................................................................................................................................................................................................................................T---GTTTTGCAGTCGGGATATTTAGA........................................2412.00200000001001000000
.........................................................................................................................................................TTCCACTACCTCCT---------------------GGTGCGTTTCGTC...................................................................................................................................................................................................2712.00200000020000000000
.........................................TGCTT----GT------------------TTGTATTGAAG----------TGTAATT..........................................................................................................................................................................................................................................................................................................2512.00200000000110000000
..............................................................................................................................................................................................................................................................................................................................................TTTTGCAGTCGGGATATTTAGATG---T..................................2512.00200000000020000000
......................................................................................................................................................................T---------------------GGTGCGTTTCGTCACCACGTGGACTA......................................................................................................................................................................................2712.00200000001000010000
.................................................................................................................................................................................................................................................................................................................................................TGCAGTCGGGATATTTAGATG---TTG................................2411.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................TAGATG---TTGTTGTACCTCCAGA-TA................2411.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................TG---TTGTTGTACCTCCAGA-TATTTTAA..........2611.00100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................TGTACCTCCAGA-TATTTTAAACCACCCAGA3011.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................TCATT----TTCTTT---GTTTTGCAGTCGGGATA..............................................2811.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................TTCTTT---GTTTTGCAGTCGGGATATT............................................2511.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................CGGGATATTTAGATG---TTGTTG.............................2111.00100000000001000000
...........................TTTAAGTCGTGGTATGCTT----..........................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
....................................................................................................................................................................................................................TACCGTA------A---------------TA--------TA--ACATT--------------TTTTTA-----------TCTA--A..................................................................................................2811.00100000000010000000
...........................TTTAAGTCGTGGTATGCTT----GT------------------TTGTA.................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................GTCGGGATATTTAGATG---TTGTTGTACC.........................2711.00100000000010000000
..........................TTTTAAGTCGTGGTATGCTT----GT------------------TTGTA.................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..............................AAGTCGTGGTATGCTT----GT------------------TTGTATT...............................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
....................................................................................................................................................................................................................................................................................TTTA-----------TCTA--AT-----------ACTTTTCATT----TTCTTT---GTT............................................................2911.00100000001000000000
.........................................................................................................................TTT--TTTACCGTCTACATATGGTATT........................................................................................................................................................................................................................................................2511.00100000000100000000
............................................................................................................................................................................................................................................................................................................................................................TATTTAGATG---TTGTTGTACCTCCAGA-T.................2711.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................TTTTGCAGTCGGGATATT............................................1811.00100000000001000000
...............................AGTCGTGGTATGCTT----GT------------------TTGTA.................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
......................................................................................................................................................................T---------------------GGTGCGTTTCGTCACCACGTGGACT.......................................................................................................................................................................................2611.00100000000010000000
..............................................................................................................................................................................................TGCGTTTCGTCACCACGTGGACTACCG...................................................................................................................................................................................2711.00100000001000000000
............................TTAAGTCGTGGTATGCTT----GT------------------TTGTAT................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.................................................................................................................................................................................................................................................................................................................................................TGCAGTCGGGATATTTAGATG---TT.................................2311.00100000000001000000
......................TATTTTTTAAGTCGTGGTATGCTT----..........................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
......................TATTTTTTAAGTCGTGGTATG.................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
........................TTTTTTAAGTCGTGGTATGCTT----GT------------------......................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
...........................................................................TTGAAG----------TGTAATTA----GATAACAAAA...........................................................................................................................................................................................................................................................................................2411.00100000001000000000
............................TTAAGTCGTGGTATGCTT----G.........................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..............................................................................................................................................................................................TGCGTTTCGTCACCACGTGGACTAC.....................................................................................................................................................................................2511.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................TTT---GTTTTGCAGTCGGGATATTTAGAA.......................................2711.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................TTCATT----TTCTTT---GTTTTGCAGTCGGG.................................................2611.00100000000010000000
.......................................................................................................................................................................................................................................................................................A-----------TCTA--AT-----------ACTTTTCATT----TTCTTT---GTTT...........................................................2711.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................TTTGCAGTCGGGATATTTAGATG---TTGT...............................2711.00100000001000000000
.............................................T----GT------------------TTGTATTGAAG----------TGTAATTA----GAT..................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.................TACTATATTTTTTAAGTCGTGGTATGC................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................TTT---GTTTTGCAGTCGGGA................................................1811.00100000000000100000
..............................................................................................................................................................................................TGCGTTTCGTCACCACGTGGACTACCGTA------...........................................................................................................................................................................2911.00100000001000000000
.........................................................................TATTGAAG----------TGTAATTA----GATAACAAAA...........................................................................................................................................................................................................................................................................................2611.00100000001000000000
......................................................................................................................................................................T---------------------GGTGCGTTTCGTCACCACGTGGAC........................................................................................................................................................................................2511.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................TCTTT---GTTTTGCAGTCGGGATATTTA..........................................2611.00100000000100000000
...............................................................................................................................................................................................................................................................................................................................................TTTGCAGTCGGGATATTTAGATG---TTGTT..............................2811.00100000001000000000
.........................................................................................................................................................TTCCACTACCTCCT---------------------GGTGCGTTTCG.....................................................................................................................................................................................................2511.00100000000010000000
.....................................................................................................................................................................................................................................................................................................TA--AT-----------ACTTTTCATT----TTCTTT---GTTT...........................................................2411.00100000000010000000
....................TATATTTTTTAAGTCGTGGTATGCTA----..........................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...............................................................................................................................................................TACCTCCT---------------------GGTGCGTTTCGTCACCACGT............................................................................................................................................................................................2811.00100000000001000000
............................................TT----GT------------------TTGTATTGAAG----------TGTAATTA----GA...................................................................................................................................................................................................................................................................................................2511.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................TAGATG---TTGTTGTACCTCCAGA-TATT..............2611.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................CGGGATATTTAGATG---TTGTTGTACCTCC......................2811.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................TTCTTT---GTTTTGCAGTCGGGATATTTAGA........................................2911.00100000001000000000
...............................AGTCGTGGTATGCTT----GT------------------TTGTATTGA.............................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................TG---TTGTTGTACCTCCAGA-TATTTT............2411.00100000000001000000
droSec2
TCCA-------GACCCATACTATATTTTTTAAGTCGTGGTATGCTT----GT------------------TTGTATTGAAG----------TGTAATTA----GATAACAAAAAGACCATTTTTT-TTTACCGTCTACATATGGTATTCGCAATTCCACTACCTCCT---------------------GGTGCGTTTCGTCACCACGTGGACTACCGTA------A---------------TA--------TA--ACATT--------------TTTTTA-----------TCTA--AT-----------ACTTTTCATT----TTCTTT---GTTTTGCAGTCGGGATATTTAGATG---TTGTTGTACCTCCAGA-TATTTTAAACCACCCAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TCCT-------AACCCATTCTATATTTTTTAAGCCTTGGTATGCGT----GA------------------TTGTATTAAAG----------TATAATTA----GATATA-AAAAGCCCATTTTTA-TTTA-----------------------------------CT---------------------GATGCGTTTCATCACCACGTGGAGTACCGTA------A---------------TT--------TA--AAATT--------------CTGTTA-----------TCTA--AT-----------GCTTTTTATT----TTCTTT---GTTTTGCAGTCCGGATATTTAGATG---TTGTTGTACCTCCAGA-TATTTTAAACCACCCAGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................T---GTTTTGCAGTCCGGATATTTAGATG---T..................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000011000000
.................................................................................................................................................................................................................................................................................................................................................TGCAGTCCGGATATTTAGATG---...................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000
.........................................TGCGT----GA------------------TTGTATTAAAG----------TATA.............................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGCAGTCCGGATATTTAGATG---TT.................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTAGATG---TTGTTGTACCTCCAGA-TA................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GCGTTTCATCACCACGTGGAG........................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTTAGATG---TTGTTGTACCTCCAGA-..................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................ATG---TTGTTGTACCTCCAGA-TA................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTTAGATG---TTGTTGTACCTC.......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TGGAGTACCGTA------A---------------TT--------TA--AAATT--------------CTGT......................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTGGTATGCGT----GA------------------TTGTATTA..............................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AGTCCGGATATTTAGATG---TTG................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................AGCCTTGGTATGCGT----GA------------------TTG...................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
..........................TTTTAAGCCTTGGTATGCGT----G.........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTTGCAGTCCGGATATTTAGATG---...................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TA------A---------------TT--------TA--AAATT--------------CTGTTA-----------TCT......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTCATCACCACGTGGAGTACCGTA------A---------------TT--------.................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TACCTCCAGA-TATTTTAAACCACCC...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TAAAG----------TATAATTA----GATATA-AAAAGCCCA.....................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGCAGTCCGGATATTTAGATG---T..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TATAATTA----GATATA-AAAAGCCA......................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................TA----GATATA-AAAAGCCCATTTTTA-TT............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TT---GTTTTGCAGTCCGGATATT............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTTAGATG---TTGTTGTACCTCCAGA-..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTTAGATG---TTGTTGTACCTCCAGA-TA................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................G---TTGTTGTACCTCCAGA-T.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTAAGCCTTGGTATGCGT----GA------------------T.....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................TGCGT----GA------------------TTGTATTAAAG----------TATAAT...........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GCAGTCCGGATATTTAGATG---T..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................TTTTTAAGCCTTGGTATGCGT----..........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................................................................................................................................................................................................................................................TCCGGATATTTAGATG---TTGTTGTACC.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CTTGGTATGCGT----GA------------------TTGTATT...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTCATCACCACGTGGAGTACC....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTTTTTAAGCCTTGGTATGCG...............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................TATGCGT----GA------------------TTGTATTAAAG----------TATAA............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATTTTTTAAGCCTTGGTATGCGT----..........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AGTCCGGATATTTAGATG---TTGT...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TAAGCCTTGGTATGCGT----GA------------------TTGTATT...............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................AGATG---TTGTTGTACCTCCA.....................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TCCGGATATTTAGATG---TTGTT..............................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TGCGTTTCATCACCACGTGGAGTA......................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................A-TTTA-----------------------------------CT---------------------GATGCGTTTCATCA..................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................T---GTTTTGCAGTCCGGATATTT...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................TTGTTGTACCTCCAGA-TATTTTAAAC........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................TGCGT----GA------------------TTGTATTAAAG----------T................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TATGCGT----GA------------------TTGTATTAAA............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTGCAGTCCGGATATTTAGAT.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
droEre2
TCTA-------TTTTCTTTTTTTTTTTTTTAGTTTTTTTTTTGCC-----GT------------------TTG-ATTGGGG----------TGTAATCG----AATGAT-AAAAGCAAATTTTTA-TTTACCGTCTATATATGGTAATCGCCTTCGCACACACTCGT---------------------GGTTC----------------------CAAA------AATTAAACTTTAA-AAATTAATTATTAAACATTTT--------------AATTTA-----------TCTA--AT-----------GCCTTTCATT----ATCTTT---GTTTTGCAGTCTGGATATTTAGATG---TTGTTGTACCTCCTGA-TATTTTAAACCATCCAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................TAGTTTTTTTTTTGCC-----GT------------------TTG-AT................................................................................................................................................................................................................................................................................................................................2316.0060000006
..........................................................................................................................................................................................................................................................................................................T-----------GCCTTTCATT----ATCTTT---GTTTTGCAGTC....................................................2811.0011000000
droYak3
GGCA-------A----------------------------------------------------------------------------------------------------------TTTTTTA-TTTACCGTCTAT--ATAGTATTCGCCT------------CT---------------------TGTGCGTTTAGTTTCCACTA-----TCCGTCCATAGTGATTGAGCTTCAAGAAACTAATT------------------------------------------G---A--T-----------TTTTTC-TATATAAAATCTTT---GTCTTGCAGTCTGGATATTTAGATG---TTGTTGTACCTCCAGA-TATTTTAAACCATCCAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TAAC-------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTCGGTTAAAACTTTACATTT-----------G--C-----------ATCTT-ATATT----TTATGT---GTTTTGCAGTCCGGGTACTTAGATG---TTGTGGTTCCGCCAGA-TATTTTAAACCATCCAGASizeHit CountTotal NormTotal
No Reads
droBia1
CCCA-------CACCAATTGGTCTGTTTTCAAGTCTTTGTATGCAATTCTTTTAGTTCAC-------------------GA----------AACTATCG----GACGAT-TACAGTTGATTTTCATTTCTTCGTGTATGTATGATAGTCACCTTCGCACACCCTCCT---------------------GGTGCGCTTCGTCTCTACGTTGACTGCTGTCCACAG-----------------------------------T--------------GATTTA-----------TGTA--TT-----------AATA---------TATTTTTGTATTTATG-TATTAATGTATTTATGTA---TTTTTGTATTT------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCCC-------AATTCAATTGATTTTCTTAAAGTCTTGGTATCCAATCCCGTTAGTTTTTGGGATACCTTTCG-ATTGGTATATCACTCATTATGATCG----GACCAT-CACAGCAGATTTTCAATTCTGTGGCTATATATAGTAGTCGCTTTTGCACACTCTCCT---------------------GGTGCGCTTCGTCACTACATGGACTGCCGTCCATAG---------------------------------------------------TGATA-----------TTTA--AT-----------ACTTC-TGTT----GAAATA---GTTACGCTTACGGGATGTTTGTATTTTGTTTTTGTATCTTGAGCCTATTTTTAA---------SizeHit CountTotal NormTotal
No Reads
droEle1
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---GTTTTGCAGTCTGGATTCTTAGATG---TTGTTGTGCCGCCAGA-TATTTTAAACCACCCAGASizeHit CountTotal NormTotal
No Reads
droRho1
TTTT-------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------A---------------GC--------TA--A-AAC--------------TTACCATTAACCAGTTG---A--C-----------ATCTT-AAACA----TTGTAT---GCTTTGCAGTCTGGACACTTAGATG---TTGTTGTGCCGCCCGA-TATCTTAAGCCATCCAGASizeHit CountTotal NormTotal
No Reads
droFic1
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTTTACAGTCTGGATACCTAGATG---TTGTTGTGCCACCAGA-TATTTTAAACGACCCAGASizeHit CountTotal NormTotal
No Reads
droKik1
ATCT-------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------AATTTTTTTT----TTTG-----CTGTTTCAGTCTGGACATTTAGATG---TTGTTGTACCACCAGA-TATTATGAACCACCGAGASizeHit CountTotal NormTotal
No Reads
droAna3
AACC-------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------TTTATA-----------TCTA--AAATAAATTTTA-GCTTTTCGTT---TGGCTTTG--TTTTTTCAGTCAGGGTATTTGGATG---TGGTTGTTCCACCAGA-TATTCTTAACCACCCGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTTTTCAGTCAGGATATTTGGATG---TGGTTGTTCCACCAGA-TATTCTTAACCACCCAACSizeHit CountTotal NormTotal
No Reads
dp5
CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTTTCGCAGTCAGGCTATTTAGATG---TTGTTGTGCCACCGGA-TATTCTAAATCACCCAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTTTCGCAGTCAGGCTATTTAGATG---TTGTTGTGCCACCGGA-TATTCTAAATCACCCAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCAAGCACATCAACCTTTTTTTTTTTTTTTAAATTATAGTT------------------------------TCCATTGAAT----------TGAAATTAATCTTATATA-AAAGTC-----------------------------TCTGTCCTTCTCACTCTCTCCTCCTTATTTCCCTCCCTGTCCCGCTGGGCCTCTTCA---------------TCCGTAGTTATTTAATTCGGGTAATTAAATTGTCGGTCAAATT--------------TTATAA-----------TTGA--AA-----------ACTTTTCATT----TTCATT---CTTTTGTTTTGTTGTTGTTTTTTTT---TTTTTGTTTGATTAGA-TATGTTGA----------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................CGCTGGGCCTCTTCA---------------TCCGT..............................................................................................................................................................................2011.00101000
.....................................................................................................................................................................................................................................................................................................................................................TTGTTGTTGTTTTTTTT---TTTT...............................21200.05100010
droVir3
AATA-------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGCA----------TTGTCTTTTTACAGTCTGGCTATTTAGATG---TCGTTGTTCCACCGGA-CATTCTCTACCATCCCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................TTAGATG---TCGTTGTTCCACCGGA-CAT...............2611.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
TATG-------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATT--------------TTTTAT-----------TCTATTTAATAAAGTTTG-TATTAATGTC----TGAAAT---GTTTTACAGTCGGGATATTTAGATG---TTGTGGTTCCACCGGA-CATCCTAAACCACCCTGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATCG-------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------A---------------AA--------TA--A-ATT--------------GTGTTA-----------TTAA--TT-----------ATTGCTTATG----T----TGTCCATTTACAGTCTGGCTATTTAGATG---TTGTGGTGCCACCGGA-TATTCTCAATCATCCCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:52 AM