ID:

dsi_6303

Coordinate:

3r:4163807-4163890 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-11.2	-11.2	-11.0

Flybase annnotation

exon [3r_4163679_4163806_+]; CDS [3r_4163679_4163806_+]; CDS [3r_4163891_4164010_+]; exon [3r_4163891_4164010_+]; intron [3r_4163807_4163890_+]

Repeatable elements

Name	Class	Family	Strand
(CCCGAA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------################################################## CGCCACTGGCATGCCCTCATGGGCAATGCCGTCTACAATTATCATTCCAAGTGAGTAGCAATCAGGCCTGTGGCCAAGTTGTCATCCAAAATCGAAACCGAAACTGAACCCGAACCCGAACTTCCACTTTGCAGCGACGGGTCCGTGCACATTATTAAGCCCAACGGCTATATGGAGACACGTG ************************************************.((.((.(((((..((((...))))..))))).)).))...(((....))).................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
..................................................................................................CGAAACTGAACCCGAACCCGA.................................................................	21	0	1	1.00	1	1	0	0	0
.................................................................................................................................................................CAACGGCTATATGGAGACA....	19	0	1	1.00	1	0	1	0	0
.....................................................................................................AACTGAACCCGAACCCGAACT..............................................................	21	0	1	1.00	1	1	0	0	0
.............................................................................................................................ACTTTGCAGCGTCGGGC..........................................	17	2	17	0.06	1	0	0	1	0
..................................................................................................CGAAACTGAACGCGGACCG...................................................................	19	3	20	0.05	1	0	0	0	1

Anti-sense strand reads

GCGGTGACCGTACGGGAGTACCCGTTACGGCAGATGTTAATAGTAAGGTTCACTCATCGTTAGTCCGGACACCGGTTCAACAGTAGGTTTTAGCTTTGGCTTTGACTTGGGCTTGGGCTTGAAGGTGAAACGTCGCTGCCCAGGCACGTGTAATAATTCGGGTTGCCGATATACCTCTGTGCAC ************************************************.((.((.(((((..((((...))))..))))).)).))...(((....))).................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	M025 embryo
..............GGAGTACCCGTTACGGCAGATGTTAAT...............................................................................................................................................	27	0	1	1.00	1	1	0	0
......................................................................................................TGACCTGGGCTTGGGC..................................................................	16	1	4	0.25	1	0	1	0
................................................................................................................................................................GGTTGCGGATATGCCT........	16	2	19	0.11	2	0	2	0
...............................................................................................................................AAGCGTCGTTACCCAGGCA......................................	19	3	12	0.08	1	0	0	1

Generated: 04/23/2015 at 09:34 PM