ID:

dsi_6300

 Coordinate:

2r:18832924-18833213 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-52.1 -52.0 -52.0

Flybase annnotation

exon [2r_18833214_18833299_-]; CDS [2r_18833214_18833299_-]; CDS [2r_18832790_18832923_-]; exon [2r_18832404_18832923_-]; intron [2r_18832924_18833213_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACATCGTATGCCCCCCAAGCGTCCTCCTACGGGCTATGAGTACAGCAAACGTAAGTTGATCCCAAGCATGCATTCTTTATTTGGGTAGTGCCGGGGTCTTTAAACATAAGATAGATTTTCCCCTAAATGCACTCCCCCAGTTTTTGGGGATGCACCTTTGACAGGAACTTTGGGTTATAGATTAGATCATACTATCAAAACCAATAACAGTGATTGAGCAAGCTCTCAGATCAAACTATATAATACACTGGAATGATTAATATTATGCAACGATTCACTTCTTTATAGTAATTACATACACGCATAAATTACTACAAATAATAATCAACCAATTTTATAGCACGTCCATCAATAATACCGACAAACGCTGCGGCATATAAACGTCCATAT
**************************************************....((((((((((((..(((((((((...(((((.(((((.((((((((.......))))........)))).....)))))..))))).....)))))))))(((.....)))...)))))).((((((((.((((((.(((.........(((....((((((((......)))).))))...))).........))).))))))))).)))))..................((((((((.............)))))))).........))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
......................................................................................................................................................................................................................TGAGCAAGCTCTCAGATCAAACTAT....................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................TACGGGCTATGAGTACAGCAAACC................................................................................................................................................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................GGGTCGTGCCGGGGACTCTA................................................................................................................................................................................................................................................................................................ 20 3 2 0.50 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................ACCTTTGAGAGGAACTGT........................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................ATATAATACACTTGAATAATTA................................................................................................................................... 22 2 3 0.33 1 0 0 0 0 0 1 0 0
..............................................................................ATTTGGGTTGTCCCGGGG...................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................AGTGAGCAAGGTCTCAGGTC.............................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................................................................................................................................GCGGCATCTAGACGTCC.... 17 2 8 0.13 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................AACAGAGATTGAGCA.......................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 1
........................................TACAGCAAACGTATG............................................................................................................................................................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................ATCTCTCAGATCAAAAT......................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

TGTAGCATACGGGGGGTTCGCAGGAGGATGCCCGATACTCATGTCGTTTGCATTCAACTAGGGTTCGTACGTAAGAAATAAACCCATCACGGCCCCAGAAATTTGTATTCTATCTAAAAGGGGATTTACGTGAGGGGGTCAAAAACCCCTACGTGGAAACTGTCCTTGAAACCCAATATCTAATCTAGTATGATAGTTTTGGTTATTGTCACTAACTCGTTCGAGAGTCTAGTTTGATATATTATGTGACCTTACTAATTATAATACGTTGCTAAGTGAAGAAATATCATTAATGTATGTGCGTATTTAATGATGTTTATTATTAGTTGGTTAAAATATCGTGCAGGTAGTTATTATGGCTGTTTGCGACGCCGTATATTTGCAGGTATA
**************************************************....((((((((((((..(((((((((...(((((.(((((.((((((((.......))))........)))).....)))))..))))).....)))))))))(((.....)))...)))))).((((((((.((((((.(((.........(((....((((((((......)))).))))...))).........))).))))))))).)))))..................((((((((.............)))))))).........))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR902009
testis
...............................................................................................................................................................................................................................AGAGTCTAGTTTGATATATTATGTGAT............................................................................................................................................ 27 1 3 3.00 9 7 2 0 0 0 0 0 0
...................................................................................CCATTACGGCGCTAGAAATTT.............................................................................................................................................................................................................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................CATCACGGCCCCAGAAAT................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................ATGATAGTTTTGCTTATTGTCAC.................................................................................................................................................................................. 23 1 2 0.50 1 0 1 0 0 0 0 0 0
.....................................................TCAAGTAGGGTTCGTACTT.............................................................................................................................................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................AAGAGTCTAGTTTGATATATTATGTGATCT.......................................................................................................................................... 30 2 3 0.33 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................TAGTCTTGGTTATTGTCACT................................................................................................................................................................................. 20 1 3 0.33 1 0 0 0 0 1 0 0 0
.........................................................................AGAAATGCAACCATCACGGC......................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................................................AGTTATTATGGCAGTTT......................... 17 1 10 0.10 1 0 1 0 0 0 0 0 0
..............................CCCGATACTTACGTCTTTTG.................................................................................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0
..............GGTTCGCACGAGGAAGC....................................................................................................................................................................................................................................................................................................................................................................... 17 2 12 0.08 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................AGATAGTTATTATGG............................... 15 1 16 0.06 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................CGTGCGTATTTATAGATGTT......................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 1
..TAGAATACGGGGGGTTACC................................................................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0
........................TGGATGCCCAATACTCG............................................................................................................................................................................................................................................................................................................................................................. 17 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:18832874-18833263 - dsi_6300 ACATCGTATGCCCCCCAAGCGT---CCTCCTACGGGCTATGAGTACAGCAAACGTAAGTTGAT---CCCA--------AGCA-TGC--ATTCTTTATTTG------------------------------------------GGTAGTGCCG-GGGTCTTT-----AA-----ACATAAGATAGA-----------------------------------------------TTT-TCCCCTAA---ATGCA----CTCCCCCAGTTTTTGGGG----ATGCACCTTTGACAGGAA-CTTT---GGGTTATAGATTA-----GATC-----ATAC------------------------TATCAA-AACCAATAACAGTGA---------------------------------------------------------TTGAGC-AAGC---------TCTC-AGATCA-AA--------CTATATAATACACTGGA-----------ATGATTAATATT-ATGC---AACGATTCAC--TTCTT--TAT-AG-TAATTA-----------------------------CATACACGCA---TAAATTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCTGCGGCATATAAACGTC------CATAT
droSec2 scaffold_9:1605523-1605894 - ACATCGTATGCCCCCCAAGCGT---CCTCCTACTGGCTATGAGTACAGCAAACGTAAGTTGAT---CCCA--------AGCA-TGC--ATTCTTTATTTG------------------------------------------GGTAGTGCCG-GGGTCTAT-----AA-----ACATAATATAGA-----------------------------------------------TTT-CCCCCTAA---AGGCA----CTTCGCCAGTTTTTGGGG----AT-------------------TT---GGGTTATAGATTA-----GATC-----ATAC------------------------TATCAA-AACCAATAACAGTGA---------------------------------------------------------TTGAGC-AAGC---------TCTC-AGATCA-AA--------CTATATAATACACTGGA-----------ATGATTAATATT-ATGC---AACGATTCAC--TTCTT--TAT-AG-TAATTA-----------------------------CATACACGCA---TAACTTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCTGCGGCATATAAACGTC------CATAT
dm3 chr2R:18297476-18297865 - ACATCGTATGCCCCCCAAGCGT---CCGCCTACGGGCTATGAGTACAGCAAACGTAAGTTAAT---CCCA--------AGCA-TGC--ATTCTTTATTTG------------------------------------------GGTAGTGCCG-GGGTCTA-----------TGACATAAGATCGA-----------------------------------------------TTTTTCCCCTGA---ATGCA---------CCAGTTTTTTGGG----ATGCACCTTTGACAGGAA-CTTT---GGGTTATAGATTAGATTAGATC-----ATAC------------------------TATCAA-AACCAATAACTGTGA---------------------------------------------------------TTGAGC-AAGC---------TCTC-AGATCA-AA--------CTATATAATACACTGGA-----------ATGATTAATATT-ATGC---AACGATTCAC--TCCTT--TAT-AG-TAATTA-----------------------------CATACACGCA---TAAAATACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATAT
droEre2 scaffold_4845:12437910-12438256 - ACATCGTATGCCCCCCAAGCGT---CCTACCACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCCA--------AGCA-TGC--ATTCTTA----------------------------TTTT-CT--------TT--CTTAGTGGCG-GGGTCTA-----------TTC----------------------------------------------------------------------------CA----CTCCGCCAGTTGTATGGG----ATGAACCTTTGATTAGAAT-CTT---GGGTGT--------------C--------AG------------------------TATCAA-AACAAATAACAATGA---------------------------------------------------------ATGAGC-AAGA---------TCTC-GAATCA-AA--------CTATATAAT-CTCTGGA-----------ATGATTAATA----------ATCGAACCAC--TTCC---TAT-AG-TAATTA-----------------------------CACACACGCA---TAAACTACTA-CAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATAT
droYak3 2R:18047215-18047580 - ACATCGTATGCCTCCCAAGCGT---CCCACTACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCCA--------AGCA-TGC--ATTCTTAATTTG-------------------------------------TTT--CTTAGTGCCG-GGGCCTA-----------TTA----------------------------------------------------------------------------CA----CTCCCCCATTTTGAGGGG----ATGCACCTTTGATTTGAAT-CTT---GGGTCACAGAATA-----GATT-----ATAG------------------------TATCAA-AACCGATAACAGTGA---------------------------------------------------------ATGAGC-AAGA---------TCTT-GAAACA-AA--------CTATATAACACTCTGGA-----------ATGATTAATATT-AAAG---AACAAACCAC--TTCC---TAT-AG-TAATTA-----------------------------CATACACGCA---TAAACTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATAT
droEug1 scf7180000409672:6211122-6211500 - GCACCGTATGCCTCCCAAGCGC---CCACCCACAGGCTATGAGTACAGCAAACGTAAGTTGAG---ACCA-----A--TGCA-TAC--TT---AA-----CTG-----------------CTCCTTT-CAGCCGTAG----------TGTCG-ATA--TATTACACAATCATTAGATAAGATTGC-----------------------------------------------TT--------AC---ACAAA----CAATCCCAGTTTTATGGG----ATGCACTTTGGATGGGGTTCCTT---GGGTTA------------GATT-----GTAG------------------------TATCAA-TACCAATACAAGTGA---------------------------------------------------------ATGAAC-AAAAA------ATTCTC-AATGCAAAA--------CTGCATAATATTCT-------------------TAATTTT-AAAT---AACAAAAAAA--GTCT--------------TA-----------------------------TATACTCGCA---TAACATAATAAAAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATATCTACAAACGGAGCGGCATATAAACGTC------CATAT
droBia1 scf7180000302143:2402535-2402944 + GCACCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGTG---CAAA--------TGCA-TGC--TA---TT-----CTA-----------------TCCCTTT-CAGCCGTAGATT--CGTAGAACCG-GGGTCTA-----------TTAGATAAAAGCGC-----------------------------------------------TTTCTACCTTCC---G-----------TCCCCGTTTTGTGGACCGTTTGCACCTTTGATGGGGCTCCTT---GGGTTA------------TATT-----GTAGTAGCAG------------------AACCAG-TACCAATACCAATAA--------------------------------------------------TCA----ATGAAC-AATAA------CTTCTC-AATGCAAAA--------CTATATAATACTCTGGA-----------ATGATTAAATTT-ACAT---AACGAACAAC--TTTTTTATAT-AG-TAATGA-----------------------------TATACACGCA---TAACATACTA-AAAGTAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATAT
droTak1 scf7180000415739:163521-163947 - GCACCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCCA--------TGCA-TGT--TT---TT-----CTG-----------------TTCCTTT-CAGCCGTAGATT--CGTAGTGCCG-GGGTCTA-----------TTAGATAAGATCGC-----------------------------------------------TTTCCGCCTTCC---AAGCA----CTGTCCCAATTAAAGGGG----TTGCACTTTGGATGGGGCTCCTT---GGGTTA------------GATT-----GTAGTATCAGTATCAGTACCTGTTCCGATACCAG-TACCAAAACCAGTGA---------------------------------------------------------ATGAAC-AATAA------CTTCTC-AATGCAA-A--------ATATATAATACTCTGGA-----------ATGATTAATTTT-AAAT---AACAAAAAAC--TTTTTTATAT-TG-TAATGA-----------------------------TATATGCGCA---TAACATACTA-AAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATAT
droEle1 scf7180000490713:154053-154463 + GCACCGTATGCCCCCCAAGCGT---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCCT--------TGCA-TGC--CT---TT-----CTA-----------------ATTCTTT-CAGCCGTAGATT--CGTAGAGCCG-GGGTCTA-----------TTATATAAAATCGA-----------------------------------------------CTCTTACCTTCC---ACGCA----CTCCCCAAGTCTTGTGGG----TTGCACTTTGGTTGGGATTCCTT---GGGCAA------------GCTT-----GTAG----AG------------------TATCAT-TACCAATACCAATAA---------------------------------------------------------ATGAAC-AAGAA------CTTATT-AATGCAAAA--------GTATGTAATACTTTGTA-----------ATGATTTATTTA-AAAT---AACAAACAAC--TTTTTTATAT-AG-TAATGA-------TT--------------------GATACACGCAACGTAACTTACTA-AAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTC------CATAT
droRho1 scf7180000780011:13517-13918 - ACACCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCCA--------TGCA-TGA--TT---TT-----CTA-----------------ATTCTTT-CAGCCGTAGATT--CGTAGTGCCG-GGGTCTA-----------CTAGATAAGATTTC-----------------------------------------------CCTTTGCCTTCC---ACGCA----CTCCCCAATATTTTTGAG----TTGCACTTTGGATGGGGCTCCTT---GGGTCA------------TATT-----GGAG------------------------TATCAG-TACCAATACCAGTGA---------------------------------------------------------ATGAAC-AAGAA------CTTCTC-AATGCAAAA--------ATATATAATACTCTTGA-----------ATGATTAATTTT-AAAT---AACGAAATAC--TTTTTTATAT-AG-TAATA-------------------------------ATACACGCA---TAACTTACTA-AAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTC------CATAT
droFic1 scf7180000454066:2214834-2215247 - GCACCGTATGCCCCCCAAGCGT---CCACCTACGGGCTATGAGTACAGCAAACGTAAGTTGGGTCGCTCA--------TGCA-TGC--TC---TT-----CTA-----------------TCCCTCT-CAGCTGTAGATT--CGTAGTGCCG-GGGTCTA-----------GTAGTTAAGATCGC-----------------------------------------------CT-CTGCCTTCC---ACGCA----CCATTCCAATTCTATGGA----TTGCACTTTGGCTGGGGTACCTC---GGGTTA------------AACT-----GTAG------------------------TATCAAGTACCAGTAACAGTGA---------------------------------------------------------ATGAAC-AAGAA------CTTCTC-AATGCAA-AAAAAAAAAGAATATAATACTCTGGA-----------ATGATTAATTTT-AAAT---AACGCAAAAACCTTTTCTATAT-AG-TAACG-------------------------------ATACACGCA---TAAACTACTA-AAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATAT
droKik1 scf7180000302476:1750401-1750830 + GCACCGTTTGCCCCCCAAGCGC---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGCA-TGACCA--------AGCA-TGA--TT---TT-----TTG--CCCTCTAGCTA--C-ATTTTTT-CAGCCTTAGATCTACATATATAATTATATCTA-----------TTAGAT-----CCC-----------------------------------------------TTCTTTCCATCCTCATTGCATTCACTCCATTTA-TTTATGGGGCA-CAGCACTTTGAATGGGTTTCCTT---GGGATA------------GATT-----GTAG------------------------CAACA-----CAGAACCAGTGA---------------------------------------------------------ATGAAC-GAGAA-AT--GCTTCTC-AATGCAA-A--------TAACATAATTTACTAGA-----------AAAATT----TT-CAA-AATAA-ACTAAAA--TAT-CTTTATT-CT------AATG--ATCGATAAACTTTTT-----T---AAAT---AA---TAACTGACTA-AAAATAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATATCAGCAAACGCAGCGGCATATAAACGAC------CATAT
droAna3 scaffold_13266:7457202-7457638 + dan_1865 GCACCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCCT--------TGCA-CGC--ATTCTTT-----CCG-----------------ATCTTTT-CATCCTTAGAGA--ATTAATGCTG-GGATCCG-----------TTAGATTGGATCCG----------------------------------------------CCTGCAGCCTCCA---GTTCA----CCTTTTACATTTTGCGGG----TTGCACTTTTGATGGGCTTCCTTTTGGGGGTA------------GACAGTATTGTAG-------------------------------------AACCAGTGAATGA-AACA----------------------------------AAA---ACAAAAGAAAAAACCAA-AA------AATCTT-CATGCAA----------TAATATAATACTTTGGA-----------ATGAATAATTTT-AAAT---AATAACCA-----TTTGTATATT--T------AATG--ATC--TAAACCATTC-----TTAATTATACACA---TAACCAGTTT-AAAGTAATAATGAAAATCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGTC------CGTAT
droBip1 scf7180000396384:270712-271139 + GCACCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCCT--------TGCA-CGC--ATTCTTT-----CCG-----------------ATCCTTT-CATCCTTAGAGA--ATTAATGCTG-GGATCCG-----------TTAGATTGGATTCG----------------------------------------------CTTGCAGCCTCCA---ATTCA----CCTTTTAGATATTGCGGG----TTGCACTTTTGATGGGCTTCCTT-TGGGGGTA------------GACA-----GTAG-------------------------------------AAACAGTGAATGA-AACA----------------------------------AAA---ACAAA------AAC-AA-AAAATAAGT-TGCAATATGCA--A--------TAATATAATACTCTGGA-----------ATGACTAATTTT-AAAT---AATAACCA-----TTTGTATATT--T------AATG--ATC--TAAACCATTC-----CTAATTATACGAA---AAACCTCTTA-AAAGTAATAATGAA--TCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGTC------CGTAT
dp5 3:14834642-14835030 + ACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATAACGCCTTTT-G-------------------------------------------TTTA-CAGTCGTAG-TT--CGTATAGACT-AGATCTA-----------TTAGAT-----CGC-------------------C---------------------------TCTTTTCC--------CTCA----C--TCTAAATTCTAGGGG----TCGCACTTTCGATGGGTTTCGTT---GGGGTA------------GTTT-----GTAG------------------------C-------------ACAAGTGATTGA-AACT---------------------------------------------------------GAA-A----CTTCT--AAAGCAA-ATAAAA----------------AAGA-----------ATGACTAATTTT-AT--AATAACAATCAAA--CGTTTTATATT--T------AACG--ACC--TAAACCATTT-----TT-GAAACACGCA---TAACATACTA-AAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAGCCATAT
droPer2 scaffold_4:4217136-4217527 - ACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATAACGCCTTTT-G-------------------------------------------TTTA-CAGTCGTAG-TT--CGTATAGACT-AGATCTA-----------TTAGAT-----CTC-----------------------------------------------CT---ATTTTCC----CTCA----C--TCTAAATTCTAGGGG----TCGCACTTTCGATGGGTTTCGTT---GGGGTA------------GTTT-----GTAG------------------------CAC----------AACAAGTGATTGA-AACT---------------------------------------------------------GAA-A----CTTCT--AAAGCAA-ATAAAA----------------AAGA-----------ATGACTAATTTT-AT--AATAACAATCAAA--CGTTTTATATT--T------AACG--ACC--TAAACCATTT-----TT-GAAACACGCA---TAACATACTA-AAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAGCCATAT
droWil2 scf2_1100000004510:62292-62668 + GCATCGTATGCCTATAAAACGAGAGCCACACGCCGGATATCAGTACAGCAAACGTAAGTTCTT-TGACAC--------AGTT-TCCGTA-------TTTA------------------------------------G-TT--CAT-----------TCTA---------------------TCAACACTACAAACAACGTTCCCCACCCATCCCGGTAGCATCTTG------------------------------------------------------------ATAATGGGTAT-CTA---AGTATA------------TATT-----TAAA------------------------TATAA----------TAAAATATTCAAAACTTAACCAAATTAAACTTATCTATATATAACAAACAAAAAAAAGAAAAGAAA-TACCAA-AA------AATATT-ACAAAA--------------------------AAT-------GAAAAGAAAAA------AAT---A---------------------------------------A--TAAACCTTAACTAAATA-TAAACATATA---TAATATA-------------------------TA-ATTTTATAGCACGTCCATCAATAATACCAACCAATGCGGCTGCTTATAAACGTCCACAACCATAT
droVir3 scaffold_12875:19340825-19341167 - dvi_7957 TCATCGCATGCC---CAAGCGTAGCGCACCATCGGGCTATGAATACACCAAACGTAAGTTGAG---CCAA--------CGATTTG--TA-------GCTAGAAA----------------ACCCTT-----AAA---A--------------------------------------------CAACTTATTTA--------------------GGGTGGGGATTGG------------------------------------------------------------GTATTGGGATT--------------------------------------------------------------CAACCA-AATAAATAATATCGA---------------------------------------------------------TTGCAT-AAAC---------TATT-AAAAAA-AA--------AAAAACAA-GCATTTGAA--------CGATGACTAATTTT-TAA-AATAACAAAT------TTTCTATTT-A--TAACT-------TTA--TATACCTACTGAATTTT-TACGTACATA---TAACATATTA-AAAAT------GAA-------TA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCTGCATATAAACGGCCTCAGCCATAC
droMoj3 scaffold_6496:13039058-13039447 - TCATCGCATGGC---CAAGCGTGGCGCACCATCTGGATATGAATACACCAAACGTAAGTTAAG---CCAA--------CGATTCG--TA-------GCGAGTATACCTT-------AGAAATCCCAACTATGAACA-A--------------------------------------------CAACATAACAATGGGGGATCTTCTCTTAGTGCGGGTCGA----------TACGAAATCTAA-----AT------CGTTATAAATCAAATTGA----TTGCATTATCTATG--------------CAAA------------TGTC-----TAAA-------------------------------------------------------------------------------------------------------------------------------------------------TATTAAAATGCAGTTGAGCTAACTGATGATGACTAATTCTTATGCAATAACAAACTAT--CTCTCTACATA--T------AATAAC-TC--TATACCTATTCAATTTA-TATAAATGTA---TAACATATTT-AAAAT------GCA--T----AACATTTTATAGCACGCCCATCAATAATACCAACAAGCGCAGCTGCATATAAACGGC------CACAG
droGri2 scaffold_15245:6841562-6841949 - TCATCGGATGCC---CAAGCGTGGAGCACCATCAGGATATGAATACAACAAACGTAAGTGGAT---GCAT-----TTT-A-TTTG--TG-------GT-TGTGTTTCTT-------TCAGATCCTTG-TATAAGTCAATA--CTTATTTTTG-GAGGGTA-----------T----------TTC-------------------C--T-----------------GTTTTTTTTTTTACCT--------TGA----T-AATAAAGTAATATTGA----TTGCATTTTGGACA---------------------------------------------------------------------------------AACAGTG--------------------------------------------------------------------CA-A----TTGTT--ATAACAT-A----------TAATAATGCATTTGAG-------GCGATGACTAATTTT-TATAAATAACAAAA------TTTCTATTT-AT-GAACTATATAAC-TA--TATACCTATTCAAATTG-TTGATAACTA---TAACATATTA-AAA------ATGCA--T----AA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCCGCATATAAACGACCTCAGCCATAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACATCGTATGCCCCCCAAGCGT---CCTCCTACGGGCTATGAGTACAGCAAACGTAAGTTGAT---CCCA--------AGCA-TGC--ATTCTTTATTTG------------------------------------------GGTAGTGCCG-GGGTCTTT-----AA-----ACATAAGATAGA-----------------------------------------------TTT-TCCCCTAA---ATGCA----CTCCCCCAGTTTTTGGGG----ATGCACCTTTGACAGGAA-CTTT---GGGTTATAGATTA-----GATC-----ATAC------------------------TATCAA-AACCAATAACAGTGA---------------------------------------------------------TTGAGC-AAGC---------TCTC-AGATCA-AA--------CTATATAATACACTGGA-----------ATGATTAATATT-ATGC---AACGATTCAC--TTCTT--TAT-AG-TAATTA-----------------------------CATACACGCA---TAAATTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCTGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGC-AAGC---------TCTC-AGATCA-AA--------CTAT..........................................................................................................................................................................................................................2511.00100010000000000000
..............................TACGGGCTATGAGTACAGCAAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
droSec2
ACATCGTATGCCCCCCAAGCGT---CCTCCTACTGGCTATGAGTACAGCAAACGTAAGTTGAT---CCCA--------AGCA-TGC--ATTCTTTATTTG------------------------------------------GGTAGTGCCG-GGGTCTAT-----AA-----ACATAATATAGA-----------------------------------------------TTT-CCCCCTAA---AGGCA----CTTCGCCAGTTTTTGGGG----AT-------------------TT---GGGTTATAGATTA-----GATC-----ATAC------------------------TATCAA-AACCAATAACAGTGA---------------------------------------------------------TTGAGC-AAGC---------TCTC-AGATCA-AA--------CTATATAATACACTGGA-----------ATGATTAATATT-ATGC---AACGATTCAC--TTCTT--TAT-AG-TAATTA-----------------------------CATACACGCA---TAACTTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCTGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................CCTCCTACTGGCTATGAGTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
ACATCGTATGCCCCCCAAGCGT---CCGCCTACGGGCTATGAGTACAGCAAACGTAAGTTAAT---CCCA--------AGCA-TGC--ATTCTTTATTTG------------------------------------------GGTAGTGCCG-GGGTCTA-----------TGACATAAGATCGA-----------------------------------------------TTTTTCCCCTGA---ATGCA---------CCAGTTTTTTGGG----ATGCACCTTTGACAGGAA-CTTT---GGGTTATAGATTAGATTAGATC-----ATAC------------------------TATCAA-AACCAATAACTGTGA---------------------------------------------------------TTGAGC-AAGC---------TCTC-AGATCA-AA--------CTATATAATACACTGGA-----------ATGATTAATATT-ATGC---AACGATTCAC--TCCTT--TAT-AG-TAATTA-----------------------------CATACACGCA---TAAAATACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................ATAAGATCGA-----------------------------------------------TTTTTCCCCTGA---ATGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCAGCGGCATATAAACGTC------C....2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................GGCTATGAGTACAGCAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AAGCGT---CCGCCTACGGGCTATGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................ACGGGCTATGAGTACAGCAAACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCAGCGGCATATAAACGTC------CAT..2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CCCCCAAGCGT---CCGCCTACGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAC--TCCTT--TAT-AG-TAATTA-----------------------------CATA.............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTGGA-----------ATGATTAATATT-ATGC---..............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................T---CCGCCTACGGGCTATGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTTGACAGGAA-CTTT---GGGTTATAGA....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATATAATACACTGGA-----------ATGATT............................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGACAAACGCAGCGGC......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGCACGTCCATCAATAATA.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AACTGTGA---------------------------------------------------------TTGAGC-AAGC---------TCTC-AGA............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAA--C----CA-ATTTTATAGCACGTCCA................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.............CCCAAGCGT---CCGCCTACGGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ATTTTATAGCACGTCCAT...............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGACAAACGCAGCGGCATATA.................2611.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGCAGCGGCATATAA................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGACAAACGCAGCGGCATAT..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AACGATTCAC--TCCTT--TAT-AG-TAATTA-----------------------------CATACAC..........................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ACTGTGA---------------------------------------------------------TTGAGC-AAGC---------TCTC-...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGGCATATAAACGTC------CA...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAATAATACCGACAAAC..............................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGA-----------ATGATTAATATT-ATG..................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..ATCGTATGCCCCCCAAGCGT---CCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AACTGTGA---------------------------------------------------------TTGAGC-AAGC---------....................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--C----CA-ATTTTATAGCACGTC..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
...........CCCCCAAGCGT---CCGCCTACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGGCATATAAACGTC------.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGACAAACGCAGCGGC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAATAATACCGACAA................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AAGCGT---CCGCCTACGGGCTATGAGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............CCCCAAGCGT---CCGCCTACGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAATACCGACAAACGCAGC.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATAACTGTGA---------------------------------------------------------TTGAGC-AAGC---------T...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
................AAGCGT---CCGCCTACGGGCTATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CGGGCTATGAGTACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAATAATCAA--C----CA-ATTTTATAG........................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACATCGTATGCCCCCCAAGCGT---CCTACCACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCCA--------AGCA-TGC--ATTCTTA----------------------------TTTT-CT--------TT--CTTAGTGGCG-GGGTCTA-----------TTC----------------------------------------------------------------------------CA----CTCCGCCAGTTGTATGGG----ATGAACCTTTGATTAGAAT-CTT---GGGTGT--------------C--------AG------------------------TATCAA-AACAAATAACAATGA---------------------------------------------------------ATGAGC-AAGA---------TCTC-GAATCA-AA--------CTATATAAT-CTCTGGA-----------ATGATTAATA----------ATCGAACCAC--TTCC---TAT-AG-TAATTA-----------------------------CACACACGCA---TAAACTACTA-CAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................TACCACGGGCTATGAGTACAGCAAACCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGA-----------ATGATTAATA----------ATCG..........................................................................................................................................................................1911.0010000010
droYak3
ACATCGTATGCCTCCCAAGCGT---CCCACTACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCCA--------AGCA-TGC--ATTCTTAATTTG-------------------------------------TTT--CTTAGTGCCG-GGGCCTA-----------TTA----------------------------------------------------------------------------CA----CTCCCCCATTTTGAGGGG----ATGCACCTTTGATTTGAAT-CTT---GGGTCACAGAATA-----GATT-----ATAG------------------------TATCAA-AACCGATAACAGTGA---------------------------------------------------------ATGAGC-AAGA---------TCTT-GAAACA-AA--------CTATATAACACTCTGGA-----------ATGATTAATATT-AAAG---AACAAACCAC--TTCC---TAT-AG-TAATTA-----------------------------CATACACGCA---TAAACTACTA-CAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................ACGGGCTATGAGTACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
...........................CACTACGGGCTATGAGTACAGCAAACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGCACGTCCATCAAT...........................................2111.00101000000000
......TATGCCTCCCAAGCGT---CCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................AACCGATAACAGTGA---------------------------------------------------------ATGAGC-.................................................................................................................................................................................................................................................................2111.00100000010000
.....GTATGCCTCCCAAGCGT---CCCACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCAGCGGCATATAAAC..............2011.00100000010000
droEug1
GCACCGTATGCCTCCCAAGCGC---CCACCCACAGGCTATGAGTACAGCAAACGTAAGTTGAG---ACCA-----A--TGCA-TAC--TT---AA-----CTG-----------------CTCCTTT-CAGCCGTAG----------TGTCG-ATA--TATTACACAATCATTAGATAAGATTGC-----------------------------------------------TT--------AC---ACAAA----CAATCCCAGTTTTATGGG----ATGCACTTTGGATGGGGTTCCTT---GGGTTA------------GATT-----GTAG------------------------TATCAA-TACCAATACAAGTGA---------------------------------------------------------ATGAAC-AAAAA------ATTCTC-AATGCAAAA--------CTGCATAATATTCT-------------------TAATTTT-AAAT---AACAAAAAAA--GTCT--------------TA-----------------------------TATACTCGCA---TAACATAATAAAAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATATCTACAAACGGAGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotal
No Reads
droBia1
GCACCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGTG---CAAA--------TGCA-TGC--TA---TT-----CTA-----------------TCCCTTT-CAGCCGTAGATT--CGTAGAACCG-GGGTCTA-----------TTAGATAAAAGCGC-----------------------------------------------TTTCTACCTTCC---G-----------TCCCCGTTTTGTGGACCGTTTGCACCTTTGATGGGGCTCCTT---GGGTTA------------TATT-----GTAGTAGCAG------------------AACCAG-TACCAATACCAATAA--------------------------------------------------TCA----ATGAAC-AATAA------CTTCTC-AATGCAAAA--------CTATATAATACTCTGGA-----------ATGATTAAATTT-ACAT---AACGAACAAC--TTTTTTATAT-AG-TAATGA-----------------------------TATACACGCA---TAACATACTA-AAAGTAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotal
No Reads
droTak1
GCACCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCCA--------TGCA-TGT--TT---TT-----CTG-----------------TTCCTTT-CAGCCGTAGATT--CGTAGTGCCG-GGGTCTA-----------TTAGATAAGATCGC-----------------------------------------------TTTCCGCCTTCC---AAGCA----CTGTCCCAATTAAAGGGG----TTGCACTTTGGATGGGGCTCCTT---GGGTTA------------GATT-----GTAGTATCAGTATCAGTACCTGTTCCGATACCAG-TACCAAAACCAGTGA---------------------------------------------------------ATGAAC-AATAA------CTTCTC-AATGCAA-A--------ATATATAATACTCTGGA-----------ATGATTAATTTT-AAAT---AACAAAAAAC--TTTTTTATAT-TG-TAATGA-----------------------------TATATGCGCA---TAACATACTA-AAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotal
No Reads
droEle1
GCACCGTATGCCCCCCAAGCGT---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCCT--------TGCA-TGC--CT---TT-----CTA-----------------ATTCTTT-CAGCCGTAGATT--CGTAGAGCCG-GGGTCTA-----------TTATATAAAATCGA-----------------------------------------------CTCTTACCTTCC---ACGCA----CTCCCCAAGTCTTGTGGG----TTGCACTTTGGTTGGGATTCCTT---GGGCAA------------GCTT-----GTAG----AG------------------TATCAT-TACCAATACCAATAA---------------------------------------------------------ATGAAC-AAGAA------CTTATT-AATGCAAAA--------GTATGTAATACTTTGTA-----------ATGATTTATTTA-AAAT---AACAAACAAC--TTTTTTATAT-AG-TAATGA-------TT--------------------GATACACGCAACGTAACTTACTA-AAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotal
No Reads
droRho1
ACACCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCCA--------TGCA-TGA--TT---TT-----CTA-----------------ATTCTTT-CAGCCGTAGATT--CGTAGTGCCG-GGGTCTA-----------CTAGATAAGATTTC-----------------------------------------------CCTTTGCCTTCC---ACGCA----CTCCCCAATATTTTTGAG----TTGCACTTTGGATGGGGCTCCTT---GGGTCA------------TATT-----GGAG------------------------TATCAG-TACCAATACCAGTGA---------------------------------------------------------ATGAAC-AAGAA------CTTCTC-AATGCAAAA--------ATATATAATACTCTTGA-----------ATGATTAATTTT-AAAT---AACGAAATAC--TTTTTTATAT-AG-TAATA-------------------------------ATACACGCA---TAACTTACTA-AAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotal
No Reads
droFic1
GCACCGTATGCCCCCCAAGCGT---CCACCTACGGGCTATGAGTACAGCAAACGTAAGTTGGGTCGCTCA--------TGCA-TGC--TC---TT-----CTA-----------------TCCCTCT-CAGCTGTAGATT--CGTAGTGCCG-GGGTCTA-----------GTAGTTAAGATCGC-----------------------------------------------CT-CTGCCTTCC---ACGCA----CCATTCCAATTCTATGGA----TTGCACTTTGGCTGGGGTACCTC---GGGTTA------------AACT-----GTAG------------------------TATCAAGTACCAGTAACAGTGA---------------------------------------------------------ATGAAC-AAGAA------CTTCTC-AATGCAA-AAAAAAAAAGAATATAATACTCTGGA-----------ATGATTAATTTT-AAAT---AACGCAAAAACCTTTTCTATAT-AG-TAACG-------------------------------ATACACGCA---TAAACTACTA-AAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTC------CATATSizeHit CountTotal NormTotal
No Reads
droKik1
GCACCGTTTGCCCCCCAAGCGC---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGCA-TGACCA--------AGCA-TGA--TT---TT-----TTG--CCCTCTAGCTA--C-ATTTTTT-CAGCCTTAGATCTACATATATAATTATATCTA-----------TTAGAT-----CCC-----------------------------------------------TTCTTTCCATCCTCATTGCATTCACTCCATTTA-TTTATGGGGCA-CAGCACTTTGAATGGGTTTCCTT---GGGATA------------GATT-----GTAG------------------------CAACA-----CAGAACCAGTGA---------------------------------------------------------ATGAAC-GAGAA-AT--GCTTCTC-AATGCAA-A--------TAACATAATTTACTAGA-----------AAAATT----TT-CAA-AATAA-ACTAAAA--TAT-CTTTATT-CT------AATG--ATCGATAAACTTTTT-----T---AAAT---AA---TAACTGACTA-AAAATAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATATCAGCAAACGCAGCGGCATATAAACGAC------CATATSizeHit CountTotal NormTotal
No Reads
droAna3
GCACCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCCT--------TGCA-CGC--ATTCTTT-----CCG-----------------ATCTTTT-CATCCTTAGAGA--ATTAATGCTG-GGATCCG-----------TTAGATTGGATCCG----------------------------------------------CCTGCAGCCTCCA---GTTCA----CCTTTTACATTTTGCGGG----TTGCACTTTTGATGGGCTTCCTTTTGGGGGTA------------GACAGTATTGTAG-------------------------------------AACCAGTGAATGA-AACA----------------------------------AAA---ACAAAAGAAAAAACCAA-AA------AATCTT-CATGCAA----------TAATATAATACTTTGGA-----------ATGAATAATTTT-AAAT---AATAACCA-----TTTGTATATT--T------AATG--ATC--TAAACCATTC-----TTAATTATACACA---TAACCAGTTT-AAAGTAATAATGAAAATCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGTC------CGTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................ACA----------------------------------AAA---ACAAAAGAAAAAACC.................................................................................................................................................................................................................................................................2111.001010000
...............................................................................................................................................................G-----------TTAGATTGGATCCG----------------------------------------------CCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................................TCCG-----------TTAGATTGGATCCG----------------------------------------------CCTGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------AAA---ACAAAAGAAAAAACC.................................................................................................................................................................................................................................................................1960.171010000
droBip1
GCACCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCCT--------TGCA-CGC--ATTCTTT-----CCG-----------------ATCCTTT-CATCCTTAGAGA--ATTAATGCTG-GGATCCG-----------TTAGATTGGATTCG----------------------------------------------CTTGCAGCCTCCA---ATTCA----CCTTTTAGATATTGCGGG----TTGCACTTTTGATGGGCTTCCTT-TGGGGGTA------------GACA-----GTAG-------------------------------------AAACAGTGAATGA-AACA----------------------------------AAA---ACAAA------AAC-AA-AAAATAAGT-TGCAATATGCA--A--------TAATATAATACTCTGGA-----------ATGACTAATTTT-AAAT---AATAACCA-----TTTGTATATT--T------AATG--ATC--TAAACCATTC-----CTAATTATACGAA---AAACCTCTTA-AAAGTAATAATGAA--TCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGTC------CGTATSizeHit CountTotal NormTotal
No Reads
dp5
ACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATAACGCCTTTT-G-------------------------------------------TTTA-CAGTCGTAG-TT--CGTATAGACT-AGATCTA-----------TTAGAT-----CGC-------------------C---------------------------TCTTTTCC--------CTCA----C--TCTAAATTCTAGGGG----TCGCACTTTCGATGGGTTTCGTT---GGGGTA------------GTTT-----GTAG------------------------C-------------ACAAGTGATTGA-AACT---------------------------------------------------------GAA-A----CTTCT--AAAGCAA-ATAAAA----------------AAGA-----------ATGACTAATTTT-AT--AATAACAATCAAA--CGTTTTATATT--T------AACG--ACC--TAAACCATTT-----TT-GAAACACGCA---TAACATACTA-AAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAGCCATATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................TACAGCAAACGTAAGTGGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCTTATAAACGTCCACAGC.....2411.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCGGCTTATAAACGTCCACAGCC....2811.0010001000000
...TCGTATGCCTCCCAAGCGTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
droPer2
ACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATAACGCCTTTT-G-------------------------------------------TTTA-CAGTCGTAG-TT--CGTATAGACT-AGATCTA-----------TTAGAT-----CTC-----------------------------------------------CT---ATTTTCC----CTCA----C--TCTAAATTCTAGGGG----TCGCACTTTCGATGGGTTTCGTT---GGGGTA------------GTTT-----GTAG------------------------CAC----------AACAAGTGATTGA-AACT---------------------------------------------------------GAA-A----CTTCT--AAAGCAA-ATAAAA----------------AAGA-----------ATGACTAATTTT-AT--AATAACAATCAAA--CGTTTTATATT--T------AACG--ACC--TAAACCATTT-----TT-GAAACACGCA---TAACATACTA-AAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAGCCATATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................CTA-----------TTAGAT-----CTC-----------------------------------------------CT---ATTTTCC----CTCA----C--C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droWil2
GCATCGTATGCCTATAAAACGAGAGCCACACGCCGGATATCAGTACAGCAAACGTAAGTTCTT-TGACAC--------AGTT-TCCGTA-------TTTA------------------------------------G-TT--CAT-----------TCTA---------------------TCAACACTACAAACAACGTTCCCCACCCATCCCGGTAGCATCTTG------------------------------------------------------------ATAATGGGTAT-CTA---AGTATA------------TATT-----TAAA------------------------TATAA----------TAAAATATTCAAAACTTAACCAAATTAAACTTATCTATATATAACAAACAAAAAAAAGAAAAGAAA-TACCAA-AA------AATATT-ACAAAA--------------------------AAT-------GAAAAGAAAAA------AAT---A---------------------------------------A--TAAACCTTAACTAAATA-TAAACATATA---TAATATA-------------------------TA-ATTTTATAGCACGTCCATCAATAATACCAACCAATGCGGCTGCTTATAAACGTCCACAACCATATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAATACCAACCAATGCGGCT........................2611.00100100
.............ATAAAACGAGAGCCACACGCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAACCAATGCGGCTGCT.....................1911.00110000
....CGTATGCCTATAAAACGAGAGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
droVir3
TCATCGCATGCC---CAAGCGTAGCGCACCATCGGGCTATGAATACACCAAACGTAAGTTGAG---CCAA--------CGATTTG--TA-------GCTAGAAA----------------ACCCTT-----AAA---A--------------------------------------------CAACTTATTTA--------------------GGGTGGGGATTGG------------------------------------------------------------GTATTGGGATT--------------------------------------------------------------CAACCA-AATAAATAATATCGA---------------------------------------------------------TTGCAT-AAAC---------TATT-AAAAAA-AA--------AAAAACAA-GCATTTGAA--------CGATGACTAATTTT-TAA-AATAACAAAT------TTTCTATTT-A--TAACT-------TTA--TATACCTACTGAATTTT-TACGTACATA---TAACATATTA-AAAAT------GAA-------TA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCTGCATATAAACGGCCTCAGCCATACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................AGCGTAGCGCACCATCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000002000000000000000000000000000000000000000000
........................................................AGTTGAG---CCAA--------CGATTTG--TA-------GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
..............................ATCGGGCTATGAATACACCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................TTA--------------------GGGTGGGGATTGG------------------------------------------------------------GTATTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................GGTGGGGATTGG------------------------------------------------------------GTATTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAACAAACGCAGCTGCATAT..................2211.001000000000000001000000000000000000000000000000000000000000000000
.........GCC---CAAGCGTAGCGCACCATCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..........................................ATACACCAAACGTAAGTTGAG---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
droMoj3
TCATCGCATGGC---CAAGCGTGGCGCACCATCTGGATATGAATACACCAAACGTAAGTTAAG---CCAA--------CGATTCG--TA-------GCGAGTATACCTT-------AGAAATCCCAACTATGAACA-A--------------------------------------------CAACATAACAATGGGGGATCTTCTCTTAGTGCGGGTCGA----------TACGAAATCTAA-----AT------CGTTATAAATCAAATTGA----TTGCATTATCTATG--------------CAAA------------TGTC-----TAAA-------------------------------------------------------------------------------------------------------------------------------------------------TATTAAAATGCAGTTGAGCTAACTGATGATGACTAATTCTTATGCAATAACAAACTAT--CTCTCTACATA--T------AATAAC-TC--TATACCTATTCAATTTA-TATAAATGTA---TAACATATTT-AAAAT------GCA--T----AACATTTTATAGCACGCCCATCAATAATACCAACAAGCGCAGCTGCATATAAACGGC------CACAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TCATCGGATGCC---CAAGCGTGGAGCACCATCAGGATATGAATACAACAAACGTAAGTGGAT---GCAT-----TTT-A-TTTG--TG-------GT-TGTGTTTCTT-------TCAGATCCTTG-TATAAGTCAATA--CTTATTTTTG-GAGGGTA-----------T----------TTC-------------------C--T-----------------GTTTTTTTTTTTACCT--------TGA----T-AATAAAGTAATATTGA----TTGCATTTTGGACA---------------------------------------------------------------------------------AACAGTG--------------------------------------------------------------------CA-A----TTGTT--ATAACAT-A----------TAATAATGCATTTGAG-------GCGATGACTAATTTT-TATAAATAACAAAA------TTTCTATTT-AT-GAACTATATAAC-TA--TATACCTATTCAAATTG-TTGATAACTA---TAACATATTA-AAA------ATGCA--T----AA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCCGCATATAAACGACCTCAGCCATACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:35 AM