ID:

dsi_6292

 Coordinate:

3l:11808230-11808379 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_11808380_11808786_+]; exon [3l_11808380_11808786_+]; intron [3l_11808073_11808379_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTTTACCTTTTCATAAGGTTTAAATGTACCTTTTCCTTTATCAGAACAGTGTGTTTTCGTTAAAACATGTGATAGAATATCAAATTTGACCTAATTTCTGTATGAAGTCTACTTAGCCTAACCTGGATAACTAGCAAATATACCAAAATTCTATTTAAGCCCTTAGTAACCATGCTTCTAAAACAACTGATTCTTCTAGAATATAACAGCAGAACGTCGTAAGCCAGGGCCGCGCATGAAGAGCTCACT
**************************************************.(((((((....)))))))....(((((.((((...(((....(((((..(((((....(((.(((.((......)).))).)))....)))))..)))))......((((.............))))......))).))))..))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..................................................................................................................................................................................................................CAGAACGTCGTGAGACAGG..................... 19 2 3 5.67 17 0 14 3 0 0 0 0 0
........................................................................................................................................................................................................................GTCGTGAGACAGGGCCG................. 17 2 1 4.00 4 4 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTCGTGAGACAGGGCC.................. 16 2 9 2.67 24 24 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAACGTCGTAAGCCAGGGCCG................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................TATAACAGCAGAACGTCGTAAG.......................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................TTCGTTAAAACATGTAACAGA............................................................................................................................................................................. 21 2 2 0.50 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................GTCGTGAGACAGGGCCGCC............... 19 3 5 0.40 2 2 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTCGTGAGACAGGGCCTC................ 18 3 20 0.30 6 6 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTCGTGAGACAGGGCCGAG............... 19 3 4 0.25 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTCGTGAGACAGGGCCTCG............... 19 3 6 0.17 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGAACGTCGCAAGACA....................... 17 2 7 0.14 1 0 0 0 0 0 0 1 0
...............................................................AAACATGGGATAGAA............................................................................................................................................................................ 15 1 11 0.09 1 0 0 0 0 0 1 0 0
..........................................................................................CCTGATCTCTGTAAGAAGT............................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 0 1 0 0
....................................................................................................GTACGAATTATACTTAGCC................................................................................................................................... 19 3 14 0.07 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GTCGTGAGACAGGGCCGG................ 18 3 15 0.07 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CAGACCGTCGTAAGAC........................ 16 2 16 0.06 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................TAACCATGCGTCGAAAAAAA............................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................GCAGACCGTCGTAAGACT....................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................CACTGGATAACTAGGAAAT.............................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACAAATGGAAAAGTATTCCAAATTTACATGGAAAAGGAAATAGTCTTGTCACACAAAAGCAATTTTGTACACTATCTTATAGTTTAAACTGGATTAAAGACATACTTCAGATGAATCGGATTGGACCTATTGATCGTTTATATGGTTTTAAGATAAATTCGGGAATCATTGGTACGAAGATTTTGTTGACTAAGAAGATCTTATATTGTCGTCTTGCAGCATTCGGTCCCGGCGCGTACTTCTCGAGTGA
**************************************************.(((((((....)))))))....(((((.((((...(((....(((((..(((((....(((.(((.((......)).))).)))....)))))..)))))......((((.............))))......))).))))..))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
...AATGGAAAAGTATTCCAA..................................................................................................................................................................................................................................... 18 0 2 1.00 2 0 2 0 0 0 0
............................TGGAAAAGGAAATAGTCTTGT......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................CAGATGAATCGGATGGGC............................................................................................................................. 18 2 2 0.50 1 0 0 1 0 0 0
.........................................................................................................................................................................TGGTACGAAGGCTTTGT................................................................ 17 2 4 0.25 1 1 0 0 0 0 0
............................................................................................................................ACCTATTGGTCGTTTA.............................................................................................................. 16 1 6 0.17 1 0 0 0 1 0 0
.............................................................................................................................................................................ACGAAGATTTTGTTGG............................................................. 16 1 9 0.11 1 0 0 0 1 0 0
..................................................................................................................................................................GAAACGTTGGTACGAAG....................................................................... 17 2 9 0.11 1 1 0 0 0 0 0
.......................................................................................................................TTAGGCCCTATTGATCGTT................................................................................................................ 19 3 12 0.08 1 0 0 0 0 1 0
.....................................................................................................................................TGGTTTGTATGGTTTTTAGAT................................................................................................ 21 3 12 0.08 1 0 0 0 1 0 0
......................................................................................................................................................................................................................TCCAGCATTCGGCCCC.................... 16 2 17 0.06 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:37 AM