ID:

dsi_6227

Coordinate:

3l:8301457-8301606 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_8301363_8301428_+]; CDS [3l_8301429_8301456_+]; exon [3l_8301363_8301456_+]; intron [3l_8301457_8302002_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTCAGTTCTGCAATTAACCAAAATGAGTGCTGGTAAACATTTGGCCAAAGGTAAGAGAAAACCAAAACCAGTTGTCGCCGCCGCCAAGAGAAACGCCCAAGTCATTAGAGTGTTTATAGTATTATTTATAAAACAAGTTCTCCAACATTCTAATGATCGAATAACGATTTTTATATTTCATAATGTTACACAAAATTATTGGCATGAATTATTGTGATTTTTGGCCAAAAGAGTTAGAAAGGTATAATAT ************************************************..((..(((....((((...(((((((.......................(((((((((((((((((((......)))))).............)))))))))))))))).))))...))))....)))...................))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	M025 embryo	O001 Testis
.............TTAACCAAAATGAGTGCTG..........................................................................................................................................................................................................................	19	0	1	2.00	2	0	0	2	0
..........................GTGCTGGTAAACATTTGGCCAAAG........................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0
.................CCAAAATGAGTGCTGGTAAAC....................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1
..................................AAACATTTGGCCAAAGGT......................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0
..CAGTTCTGCAATTAACCA......................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0
...........AATTAACCAAAATGAGTGCTG..........................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0
....GTTCTGCAATTAACCAAAATGA................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................TATTGGCATGAATTATTGTGATTTTTG...........................	27	0	1	1.00	1	1	0	0	0
..................................AAACATTTGGCCAAAGGG......................................................................................................................................................................................................	18	1	2	0.50	1	0	1	0	0

Anti-sense strand reads

AAGTCAAGACGTTAATTGGTTTTACTCACGACCATTTGTAAACCGGTTTCCATTCTCTTTTGGTTTTGGTCAACAGCGGCGGCGGTTCTCTTTGCGGGTTCAGTAATCTCACAAATATCATAATAAATATTTTGTTCAAGAGGTTGTAAGATTACTAGCTTATTGCTAAAAATATAAAGTATTACAATGTGTTTTAATAACCGTACTTAATAACACTAAAAACCGGTTTTCTCAATCTTTCCATATTATA ************************************************..((..(((....((((...(((((((.......................(((((((((((((((((((......)))))).............)))))))))))))))).))))...))))....)))...................))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	GSM343915 embryo
............................................................................................TGCGGGTTCAGTAATCTCACA.........................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................ATTGCTAAAAATATAAAGTATTACAATGA............................................................	29	1	1	1.00	1	0	1	0	0	0	0	0	0
AAGTTAAGACGTTAATT.........................................................................................................................................................................................................................................	17	1	3	0.33	1	0	0	1	0	0	0	0	0
............................................................................................................................AAATATTTTCTTCAGGAGCTT.........................................................................................................	21	3	5	0.20	1	0	0	0	1	0	0	0	0
.................................................................................................................................................................................AGAATTTCAATTTGTTTTAATAA..................................................	23	3	9	0.11	1	0	0	0	0	1	0	0	0
...........................................................................................TTGCAGGTTCAGTAA................................................................................................................................................	15	1	12	0.08	1	0	0	0	0	0	1	0	0
.......................................................................................ATTTTTGCGGGTTCAGGAA................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0
.................................................................................................................................TTTTATTCAAGAGGCTGCA......................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1

Generated: 04/24/2015 at 10:49 AM