ID:

dsi_6226

Coordinate:

3l:16211536-16211685 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGGGGCCATCAATACGGCTGGCACTCTTCCAGCCAAACTGGGCAACAAGCCGCCACCGGCTGCCCCTCCACCACCGCCCCCGAACTGCACCACCTCCAACTCCTCCACCACATCCATTAGCACCTCTAGTAGAGATTGCACCAGCAGGCAGCAGGCCAGCAGCACAATAAAAAACTCTCATTCAACGCAACTCTTCGCAGATGACGAGGAGCAGTCGCACACGGAAGGCCTGGGATCGGGAGGCCAAGGA ************************************************.((..((.((((((................................................((.(((((.....))))).))...(((....))))))))).))...))..........................((........))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	O001 Testis
.......................................GGTCAAAAAGCCGCCTCCGG...............................................................................................................................................................................................	20	3	3	60.67	182	69	68	45	0	0	0	0
...............................................................................................................................................................................TCTCATTCAACGCAACTCTTCGCAGA.................................................	26	0	1	1.00	1	0	0	0	1	0	0	0
.......ATCAATACGGCTGGGGCTCTT..............................................................................................................................................................................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................TCTTCGCAGATGACGAGGAGCAGTCGCACA.............................	30	0	1	1.00	1	0	0	0	1	0	0	0
...........ATACGGCTGGCACTCTTCC............................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................CAACTCTTCTAAGATGAAGAG..........................................	21	3	2	0.50	1	0	0	0	0	1	0	0
...........................................................................................................................................ACCAGAAGGCAGCAGGC..............................................................................................	17	1	5	0.20	1	0	0	0	0	1	0	0
.............................................................GCCCCTCCATCACTGCCC...........................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	1
.............................................................................................ATCCAACTCCTCCACCA............................................................................................................................................	17	1	7	0.14	1	0	0	0	0	0	1	0
.........................................................................................................................................GCACCAGAAGGCAGCAGGCGC............................................................................................	21	3	7	0.14	1	0	0	0	0	1	0	0
..............................................................................................TCCAACTCCCCCACCA............................................................................................................................................	16	1	8	0.13	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................GTCACACCCGGAAGGCC....................	17	2	15	0.07	1	0	0	0	0	1	0	0

Anti-sense strand reads

CCCCCGGTAGTTATGCCGACCGTGAGAAGGTCGGTTTGACCCGTTGTTCGGCGGTGGCCGACGGGGAGGTGGTGGCGGGGGCTTGACGTGGTGGAGGTTGAGGAGGTGGTGTAGGTAATCGTGGAGATCATCTCTAACGTGGTCGTCCGTCGTCCGGTCGTCGTGTTATTTTTTGAGAGTAAGTTGCGTTGAGAAGCGTCTACTGCTCCTCGTCAGCGTGTGCCTTCCGGACCCTAGCCCTCCGGTTCCT ************************************************.((..((.((((((................................................((.(((((.....))))).))...(((....))))))))).))...))..........................((........))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR902008 ovaries	GSM343915 embryo	M023 head	SRR553485 Chicharo_3 day-old ovaries
........................................................................................................................................................................................TCCGATGAGAAGCGTCTACTGT............................................	22	3	1	1.00	1	1	0	0	0	0	0
.....................................................................................ACGTGGTGGTGGCTTAGGAGGTGGT............................................................................................................................................	25	3	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................TTCGAGATAAAGTTGCGTTGA..........................................................	21	3	4	0.75	3	3	0	0	0	0	0
..................................................................................................TGAGGAGGTGGTGGAGGTAGGCG.................................................................................................................................	23	3	2	0.50	1	0	1	0	0	0	0
......................................................................................CGTGGTGGTGGCTTAGGAGGTGGT............................................................................................................................................	24	3	3	0.33	1	0	1	0	0	0	0
................................................................................................TTTGAGGAGGTGGTTCAGGTA.....................................................................................................................................	21	3	11	0.18	2	0	2	0	0	0	0
.............................................................................GGGGCGTGACGTGGTGGTGG.........................................................................................................................................................	20	2	6	0.17	1	0	0	0	1	0	0
.........................................................................................................................................................CAGGTCGTCGTGATATTT...............................................................................	18	2	8	0.13	1	0	0	0	0	1	0
.................................................GGCGGTAGTCGACGGGGAGGG....................................................................................................................................................................................	21	3	9	0.11	1	0	0	0	1	0	0
.................................................................................................................................................................................AGGAAGTTGCGTTAAGA........................................................	17	2	18	0.06	1	0	0	0	0	0	1
...............................................................................................................................................CGTCCGACGTCAGGTCGT.........................................................................................	18	2	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 02:57 AM