ID:dsi_6150 |
Coordinate:3l:8297687-8297895 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
CDS [3l_8297610_8297686_+]; exon [3l_8297592_8297686_+]; CDS [3l_8297896_8298959_+]; exon [3l_8297896_8298959_+]; intron [3l_8297687_8297895_+]
No Repeatable elements found
| ##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGGGACTCACACCTCACCTATCTGAACTCTTCCATAGCCACACTTTATAAGTAAGTACCACTGTACCATAGTTCGTACATATTTTAAGTTTGTGTTTTTTTGTAATTCTGAGCTAGCAGCTTTTAAAGTAAAAAAACATAAAATGTATAAGAGTCTGAAGATCAAACACTCATTTCCTAAGAACCCTTCTTTAATATTCTCCAAGATTCCTACAAAATACGTAAATATGCTAAATTAACGCTTCATATTTCTCCTTTAGGAACGAAAAGTTCGCCGATGTGGTTCTGTACAGCTCCTACAACAGCAGCG **************************************************(((.((((.(((((...)))))..)))).)))......((((((((((((((.......(((((...)))))......)))))))))))))).((((...((((((..(((.................(((((...)))))......)))...)))))).))))........(((((((..............))))))).........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902009 testis |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
GSM343915 embryo |
O001 Testis |
M053 female body |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................................................................................TGGTTCTGTACAGCTCCTACAACAGCAG.. | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................TAAGAACGAAAAGTTCGCCGATGTGG........................... | 26 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................ATAACAGTCCGACGATCA................................................................................................................................................. | 18 | 3 | 20 | 0.25 | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................TTTCCTAGGAACCCTTGTCT..................................................................................................................... | 20 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................TAGAATGTAAAAAAGTCTGAAG..................................................................................................................................................... | 22 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .....................................................................................AAGTTAGTATTTTTTTGTAA............................................................................................................................................................................................................ | 20 | 2 | 10 | 0.20 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 |
| ....................................................................................................................................................AACAGTCCGAAGATCAAA............................................................................................................................................... | 18 | 2 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................CTCTCGAAGATTCCGACAAA............................................................................................. | 20 | 3 | 8 | 0.13 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................GAAAAATTCGCCGGTGTGGA.......................... | 20 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .....................................................................................................................................................................................................TCTCCATGATTCGTACA............................................................................................... | 17 | 2 | 11 | 0.09 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................ACTTTATGAGTAAGT............................................................................................................................................................................................................................................................. | 15 | 1 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..................................................................................................................................................ATAACAGTCCGACGATCAA................................................................................................................................................ | 19 | 3 | 13 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................TCTCGAAGATTCGTACA............................................................................................... | 17 | 2 | 13 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................TCTCCATGATTCGTAC................................................................................................ | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
|
ACCCTGAGTGTGGAGTGGATAGACTTGAGAAGGTATCGGTGTGAAATATTCATTCATGGTGACATGGTATCAAGCATGTATAAAATTCAAACACAAAAAAACATTAAGACTCGATCGTCGAAAATTTCATTTTTTTGTATTTTACATATTCTCAGACTTCTAGTTTGTGAGTAAAGGATTCTTGGGAAGAAATTATAAGAGGTTCTAAGGATGTTTTATGCATTTATACGATTTAATTGCGAAGTATAAAGAGGAAATCCTTGCTTTTCAAGCGGCTACACCAAGACATGTCGAGGATGTTGTCGTCGC
**************************************************(((.((((.(((((...)))))..)))).)))......((((((((((((((.......(((((...)))))......)))))))))))))).((((...((((((..(((.................(((((...)))))......)))...)))))).))))........(((((((..............))))))).........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M053 female body |
SRR553487 NRT_0-2 hours eggs |
M023 head |
M024 male body |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
M025 embryo |
O001 Testis |
SRR902009 testis |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................AGAATGTATAAATTTCAAACTC....................................................................................................................................................................................................................... | 22 | 3 | 3 | 4.33 | 13 | 2 | 0 | 5 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................AGAATGTATAAATTTCAAAC......................................................................................................................................................................................................................... | 20 | 2 | 3 | 3.00 | 9 | 7 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................AAGAATGTATAAATTTCAAAC......................................................................................................................................................................................................................... | 21 | 2 | 2 | 1.50 | 3 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................AAGAATGTATAAATTTCAAACTC....................................................................................................................................................................................................................... | 23 | 3 | 3 | 1.33 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................AAGAATGTATAAATTTCAAA.......................................................................................................................................................................................................................... | 20 | 2 | 7 | 1.29 | 9 | 5 | 3 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............GAGTGGATTGGCTTGATAAGG.................................................................................................................................................................................................................................................................................... | 21 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................AAAGGTTTCTTGGGAAG........................................................................................................................ | 17 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................AGAATGTATAAATTTCAAACT........................................................................................................................................................................................................................ | 21 | 3 | 12 | 0.67 | 8 | 1 | 5 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................AAGAATGTATAAATTTCAAACT........................................................................................................................................................................................................................ | 22 | 3 | 6 | 0.50 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................GAAGAATGTATAAATTTCAAAC......................................................................................................................................................................................................................... | 22 | 3 | 4 | 0.50 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................AGAATGTATAAATTTCAAA.......................................................................................................................................................................................................................... | 19 | 2 | 16 | 0.50 | 8 | 3 | 1 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 0 |
| ..........................................................................................................................................................GACTTCTAGTTTGCGA........................................................................................................................................... | 16 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................GAATGTATAAATTTCAAAC......................................................................................................................................................................................................................... | 19 | 2 | 6 | 0.33 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................................................CTAGACCAAGACATGTAGAGA............. | 21 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................AGGTTCTGAGGATGT............................................................................................... | 15 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................TGAAGAATGTATAAATTTCAAAC......................................................................................................................................................................................................................... | 23 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................AAGAATGTATAAATTTCAA........................................................................................................................................................................................................................... | 19 | 2 | 19 | 0.32 | 6 | 4 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................TTGAGAAGGTGTCGGT............................................................................................................................................................................................................................................................................. | 16 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................GAATGTATAAATTTCAAACTC....................................................................................................................................................................................................................... | 21 | 3 | 9 | 0.22 | 2 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................ATGTATAAATTTCAAACTCT...................................................................................................................................................................................................................... | 20 | 3 | 20 | 0.20 | 4 | 0 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................AAAAGAGGTTGTAAGGTTGT............................................................................................... | 20 | 3 | 16 | 0.19 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 |
| ...........................................................................ATGTATAAATTTCAAACTC....................................................................................................................................................................................................................... | 19 | 2 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................AGGATGGATAAATTTCAAAC......................................................................................................................................................................................................................... | 20 | 3 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................AAATTTGATCTTTTTGTAT......................................................................................................................................................................... | 19 | 2 | 16 | 0.06 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........CGGAGTGGTTAGACTTGAC........................................................................................................................................................................................................................................................................................ | 19 | 3 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ................................................................................................................................................................................................TTTTTAGAGGTTCAAAGGA.................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................................................ATGTTGAGGATGTTG....... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................CAGGATGTATAAATTTCAAA.......................................................................................................................................................................................................................... | 20 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................................................ATGTCGAGGATGATG....... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......TGTGTGGACTGGATAG............................................................................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................TATGCCTTTATACGA.............................................................................. | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:49 AM