ID:

dsi_6146

Coordinate:

3l:16209255-16209449 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-29.2	-29.2	-29.1

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

AGATAAGCGCTAAAGAATAATATCTAAAACGAAATCGGATCAAAAACAAAGTACTTCAATGAGAAATAAAACGATATTTAAAGAATTCAAACTCCCATGTTTTAGCGGGATGAACTGGGCGTTGGGTATTTATTTTTTGAAACATTTAAAAATATATTTGTATTAAATACCAATTTATTATTATTTGTTATTTCGCCATTTTAGGGGAACAAATTAATGAAGACAATGCTTCTTTCCTTTTTTAGATTACCCTATTATTGAAAAGCAACAAACAATTAATTTGTTTTATTTTTAC ************************************************((.(((((.(((..............((((((((((((.(((.((((.((((.........)))))))).))).)).....))))))))))(((..(((.((((.(((.((((...)))).))).)))).)))..)))...(((.((......)).)))....))).))))))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	O001 Testis	O002 Head	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
.........................................TAAAACAATGTATTTCAATGAGA.......................................................................................................................................................................................................................................	23	3	1	2.00	2	2	0	0	0	0	0	0	0
........................................................................................................GCGGGATGAACCGAACGTTGGGT........................................................................................................................................................................	23	3	1	2.00	2	2	0	0	0	0	0	0	0
..................................TCGGATCAAAAACAAAGTACTTCAATGAGA.......................................................................................................................................................................................................................................	30	0	1	1.00	1	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................TACCCTATTATTGAAAAGCAACA.........................	23	0	1	1.00	1	0	0	0	0	1	0	0	0
.................................ATCGGATCAAAAACAAAGTACTTC..............................................................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	0	0	1	0	0
.........................................................................................................CGGGATGAACTGGGCGTTGGG.........................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
..........TAAAGAATAATATCTAAAACGAAATCGGA................................................................................................................................................................................................................................................................	29	0	1	1.00	1	0	0	0	0	0	0	1	0
.........................................................................................................CGGGATGAACCGAACGTTGGG.........................................................................................................................................................................	21	3	1	1.00	1	0	0	0	1	0	0	0	0
................................................................................................................AACGCGGCGTTGGGTATTTTT..................................................................................................................................................................	21	3	3	0.67	2	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................AATGAATGAAGACAATGCT.................................................................	19	1	2	0.50	1	0	1	0	0	0	0	0	0
.................................................AATACTTCAATGAGA.......................................................................................................................................................................................................................................	15	1	18	0.22	4	2	0	2	0	0	0	0	0
.................................................AATACTTCAATGAGAA......................................................................................................................................................................................................................................	16	1	10	0.10	1	0	0	1	0	0	0	0	0
................................................AAATACTTCAATGAGA.......................................................................................................................................................................................................................................	16	1	10	0.10	1	0	0	0	1	0	0	0	0
...................................................................................................................TGGGCGTTGGTTCTTTTTTTT...............................................................................................................................................................	21	3	20	0.05	1	1	0	0	0	0	0	0	0
...........................................................TCGGAAATAAAACGATAT..........................................................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................AGATAAGGTTTCTTTCCTTT.......................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	1
.....................................................................................................................................TGTTTGAAACAGTTAAAAA...............................................................................................................................................	19	2	20	0.05	1	0	0	0	1	0	0	0	0

Anti-sense strand reads

TCTATTCGCGATTTCTTATTATAGATTTTGCTTTAGCCTAGTTTTTGTTTCATGAAGTTACTCTTTATTTTGCTATAAATTTCTTAAGTTTGAGGGTACAAAATCGCCCTACTTGACCCGCAACCCATAAATAAAAAACTTTGTAAATTTTTATATAAACATAATTTATGGTTAAATAATAATAAACAATAAAGCGGTAAAATCCCCTTGTTTAATTACTTCTGTTACGAAGAAAGGAAAAAATCTAATGGGATAATAACTTTTCGTTGTTTGTTAATTAAACAAAATAAAAATG ************************************************((.(((((.(((..............((((((((((((.(((.((((.((((.........)))))))).))).)).....))))))))))(((..(((.((((.(((.((((...)))).))).)))).)))..)))...(((.((......)).)))....))).))))))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR618934 dsim w501 ovaries	M023 head
.....................................................................TTTCTATAAATTTCTCAAGTATG...........................................................................................................................................................................................................	23	3	3	0.33	1	1	0	0	0
..............................................................................................................................................................................................................................................................AATAACTTGTCGTTGTTT.......................	18	1	4	0.25	1	0	1	0	0
...............................TTTCGCCTAGTTTTTGT.......................................................................................................................................................................................................................................................	17	1	12	0.08	1	0	0	1	0
...........................TTGGTTTAGCCTAGTTCTCG........................................................................................................................................................................................................................................................	20	3	13	0.08	1	0	0	1	0
......................................................................................AGTTTGAGGGTTCAAAT................................................................................................................................................................................................	17	2	19	0.05	1	1	0	0	0
...........................TGGCTTGAGCCTAGTGTTT.........................................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1

Generated: 04/24/2015 at 02:57 AM