ID:

dsi_6134

 Coordinate:

2r:13579336-13579485 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.1 -12.9

Flybase annnotation

five_prime_UTR [2r_13579486_13579496_+]; CDS [2r_13579497_13579886_+]; exon [2r_13579486_13579886_+]; intron [2r_13578627_13579485_+]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
  1. 2r:816581-816606 +
  2. 2r:832356-832381 +
  3. dsi_6134  2r:13579348-13579373 +
  4. 3l:17623574-17623599 +
  5. 3l:22193503-22193528 -
  6. 3l:22448729-22448754 +
  7. 3l:22474352-22474377 +
  8. 3l:22869432-22869457 +
  9. 3l:22885207-22885232 +
  10. 3l:22926269-22926294 +
  11. 3l:22942044-22942069 +
  12. 3l:22986297-22986322 +
  13. 3l:23002072-23002097 +
  14. 3l:23152312-23152337 +
  15. 4:703910-703935 +
  16. 4:805180-805205 +
  17. x:43235-43260 +
  18. x:19819937-19819962 -
  19. x:20091418-20091443 -
  20. node_11571:13714-13739 -
star
  1. 2l:20078995-20079014 -
  2. dsi_6134  2r:13579439-13579458 +

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCTATTTATTTTGTTTTTGAATTTTCAAGAGATAATTAAATTTCTCGCTCACACTTCCAGCTGAGTAACGGGTATCTGATAGTCGGAGAACTCAACTATAACATCTTTTGTTATTAATGAAAATACCAGAAAAAATAATTAAATGCTAATAAATTATTTCTATTCTATTCTATTATATTATTCCTATTTACACATGTAGGTAATTCGAATATGGATTTTGAAACGGGAGAGCATCATTACCAATACAAG
**************************************************************(((((..(((.(((...))).)))....)))))...((((((.....)))))).............((((.((((((((...........))))))))...))))......***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 O002
Head
 M024
male body		 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
..............................................................TGAGTAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 26 0 20 7.70 154 78 69 7 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTC..................................................................................................................................................................... 23 0 20 6.35 127 56 71 0 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTCGGAGA................................................................................................................................................................ 28 0 17 2.41 41 21 18 0 1 0 0 0 1 0 0 0
.........................................................................................................................................................ATTATTTCTATTCTATTCTA............................................................................. 20 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0
....................................................................................CGGAGAACTCAACTATAACATCTT.............................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................TTTTGAAACGGGAGA................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TATGGATTTGGAAACGGGAGAGCATA.............. 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGGGAGAATATCATTACCAGTA.... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................GTATCTGATAGTCGGAGAAC.............................................................................................................................................................. 20 0 18 0.83 15 0 0 0 0 15 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTCGGAG................................................................................................................................................................. 27 0 17 0.76 13 4 4 0 3 0 0 0 0 1 0 1
..............................................................TGAGTAACGGGTATCTGATAG....................................................................................................................................................................... 21 0 20 0.30 6 0 0 6 0 0 0 0 0 0 0 0
.........................................................CCAGCTGAGTAACGGGTATCTGA.......................................................................................................................................................................... 23 0 11 0.18 2 0 0 0 2 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGAATCTGATAGTCGGA.................................................................................................................................................................. 26 1 20 0.15 3 1 0 0 2 0 0 0 0 0 0 0
........................................................................................................TATTTTGTTATCAATGAAAA.............................................................................................................................. 20 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................ACATCTTTTGTCCCTAATGA................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
........................................................TCCATCTGAGTAACGGGTATCTGAT......................................................................................................................................................................... 25 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................TAACGGGTATCTGATAGTCGGAGAAC.............................................................................................................................................................. 26 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................GTAACGGGTATCTGATAGTCGGAGAAC.............................................................................................................................................................. 27 0 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
............................................................GCTGAGTAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 28 0 18 0.11 2 0 1 0 0 0 0 0 1 0 0 0
................................................................AGTAACGGGTATCTGATAGTCGGAGA................................................................................................................................................................ 26 0 19 0.11 2 1 1 0 0 0 0 0 0 0 0 0
..............................................................TGAGCAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 26 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
................................................................AGTAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTCGGAA................................................................................................................................................................. 27 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................AGAGTAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 26 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTCGTA.................................................................................................................................................................. 26 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGAT......................................................................................................................................................................... 19 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
............................................................GCTGAGTAACGGGTATCTG........................................................................................................................................................................... 19 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
.............................................................CTGAGTAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 27 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTGTCTGATAGTCGGA.................................................................................................................................................................. 26 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
...........................................................................TCTGATAGTCGGAGAACTCTACTAT...................................................................................................................................................... 25 1 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................CAGCTGAGTAACGGGTATCTGATA........................................................................................................................................................................ 24 0 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................CAGCTGAGTAACGGGTATCTGA.......................................................................................................................................................................... 22 0 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................GATAGTCGGAGAACTC............................................................................................................................................................ 16 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................GGGTATCTGATAGTCGGAGAACT............................................................................................................................................................. 23 0 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................GGGTATCTGATAGTCGGAGAAC.............................................................................................................................................................. 22 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTCGGAGC................................................................................................................................................................ 28 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................TAACGGGTATCTGATAGTCGGAGAA............................................................................................................................................................... 25 0 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGGATCTGATAGTCGGAG................................................................................................................................................................. 27 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTCGGAGT................................................................................................................................................................ 28 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
................................................................AGTAACGGGTATCTGTTAGTCGGA.................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................GTAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTCGGAC................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................GAGTAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................TCTGATAGTCGGAGA................................................................................................................................................................ 15 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................TAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................GAGTAACGGGTATCTGATAGCCGGA.................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................TTTGTTATCAATGAAAAAA............................................................................................................................ 19 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..............................................................TCAGTAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................GGGTATCTGATAGTCGGAGAAA.............................................................................................................................................................. 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................GGTATCTGATAGTCGGAGA................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGGATCTGATAGTCGGA.................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................AGCTGAGTAACGGGTATCTGATA........................................................................................................................................................................ 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................CGAGTAACGGGTATCTGATAGTCGGA.................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................CTGAGTAACGGGTATCTGATA........................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTTGGAGA................................................................................................................................................................ 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTCGCAC................................................................................................................................................................. 27 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................TGAGTAACGGTTATCTGATAGTCGGACA................................................................................................................................................................ 28 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................TAACGGGTATCTGATAGTCGGAC................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................AACGGGTATCTGATAG....................................................................................................................................................................... 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................AACGGGTACCCGATAGTCGGAGAAT.............................................................................................................................................................. 25 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................TGAGTAACGTGTATCTGATGGTTGGA.................................................................................................................................................................. 26 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................ACGGGTATCTGATAGTCGGAG................................................................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
................................................................AGTAACGGGTATCTGATAGTCAGAGAA............................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................TGAGTAACGGGTATCTGATAGTCGGAAA................................................................................................................................................................ 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAGATAAATAAAACAAAAACTTAAAAGTTCTCTATTAATTTAAAGAGCGAGTGTGAAGGTCGACTCATTGCCCATAGACTATCAGCCTCTTGAGTTGATATTGTAGAAAACAATAATTACTTTTATGGTCTTTTTTATTAATTTACGATTATTTAATAAAGATAAGATAAGATAATATAATAAGGATAAATGTGTACATCCATTAAGCTTATACCTAAAACTTTGCCCTCTCGTAGTAATGGTTATGTTC
*****************************************************************************(((((..(((.(((...))).)))....)))))...((((((.....)))))).............((((.((((((((...........))))))))...))))......************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR902008
ovaries
....................................................................TGCCAATAGACTATCAGCCTCTTGAGT........................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................ACTTTAAAGCGCGAGTGTGAAGGT.............................................................................................................................................................................................. 24 2 7 1.00 7 5 2 0 0 0 0 0 0 0
.................................................................CATTGCCCATAGACTATCAGCCT.................................................................................................................................................................. 23 0 20 0.70 14 0 0 0 14 0 0 0 0 0
.......................................................AAGGTAGACTCATTGCCCATAGACT.......................................................................................................................................................................... 25 1 8 0.63 5 1 3 0 0 0 1 0 0 0
.........................................................GGTCGACTCATTGCCCATAGACT.......................................................................................................................................................................... 23 0 11 0.36 4 0 2 0 0 0 0 2 0 0
........................................................................................................................................................................AGGATAAGATAATAAGG................................................................. 17 2 20 0.35 7 3 0 0 0 0 4 0 0 0
........................................................AGGTAGACTCATTGCCCATAGACT.......................................................................................................................................................................... 24 1 9 0.33 3 2 1 0 0 0 0 0 0 0
..................................................GTGTGAAGGTCGACTCATTGCC.................................................................................................................................................................................. 22 0 4 0.25 1 0 0 0 0 1 0 0 0 0
......................................................GAAGGTAGACTCATTGCCCATAGACT.......................................................................................................................................................................... 26 1 8 0.25 2 0 2 0 0 0 0 0 0 0
........................................................AGGTCGACTCGATGCCC................................................................................................................................................................................. 17 2 20 0.25 5 5 0 0 0 0 0 0 0 0
................................................................TCATTGCCCATAGACTATCAGCCTCTT............................................................................................................................................................... 27 0 18 0.22 4 1 1 0 0 0 2 0 0 0
........................................................AGGTCGACTCGATGCCCAC............................................................................................................................................................................... 19 3 20 0.20 4 4 0 0 0 0 0 0 0 0
...................................................TGTGAAGGTCGACTCATTGCC.................................................................................................................................................................................. 21 0 5 0.20 1 0 0 0 0 1 0 0 0 0
.......................................................AAGGTCGACTCATTGCCCATAGACT.......................................................................................................................................................................... 25 0 5 0.20 1 0 1 0 0 0 0 0 0 0
.......................................................AAGGTCGACTCAATGCCCATAGACT.......................................................................................................................................................................... 25 1 6 0.17 1 1 0 0 0 0 0 0 0 0
........................................................AGGTCGACTCGATGCCCA................................................................................................................................................................................ 18 2 14 0.14 2 2 0 0 0 0 0 0 0 0
.....................................CTTTAAAGCGCGAGTGTGAAGGT.............................................................................................................................................................................................. 23 2 7 0.14 1 1 0 0 0 0 0 0 0 0
.....................................................TGAAGGTAGACTCATTGCCCATAGACT.......................................................................................................................................................................... 27 1 8 0.13 1 0 1 0 0 0 0 0 0 0
.............................................AGCGAGTGTTAAGGT.............................................................................................................................................................................................. 15 1 18 0.11 2 0 0 0 0 2 0 0 0 0
..........................................................................................................................................................AAAATAGATAAGATAAGATA............................................................................ 20 2 20 0.10 2 0 0 2 0 0 0 0 0 0
....................................................................TGCCCATAGACTATCAGCCTC................................................................................................................................................................. 21 0 20 0.10 2 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................TAATACAATCAGGATTAATG.......................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 1 0
.................................................................CATTGCCCATAGACTATCAGCCTCTT............................................................................................................................................................... 26 0 18 0.06 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................AAAGATAAGATAAGA.............................................................................. 15 0 18 0.06 1 0 0 0 0 1 0 0 0 0
...........................................................TCGACTCATTGCCCATAGACTATCAGCCT.................................................................................................................................................................. 29 0 18 0.06 1 0 0 0 0 0 1 0 0 0
..............................................................................CTAGCAGCCTCTTGAG............................................................................................................................................................ 16 1 19 0.05 1 0 0 0 0 0 0 0 0 1
.................................................................CATTGCCCATAGACTATCAGCCTCGT............................................................................................................................................................... 26 1 19 0.05 1 1 0 0 0 0 0 0 0 0
................................................................TCATTGCCCATAGACTATCAGCCTC................................................................................................................................................................. 25 0 19 0.05 1 0 1 0 0 0 0 0 0 0
...............................................................CTCATTGCCCATAGACTATCAGCCTCT................................................................................................................................................................ 27 0 19 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................CATTGCCCATAGACTATCAGCCTCT................................................................................................................................................................ 25 0 19 0.05 1 0 1 0 0 0 0 0 0 0
................................................................TCATTGCCCATAGACTATCAGCCT.................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................ATTGCCCATAGACTATCAGCCTCT................................................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0
...............................................................CTCATTGCCCATAGACTATCAGCCT.................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...................................................................TTGCCCATAGACTATCAGCCTCT................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................CATAGACTATCAGCCTC................................................................................................................................................................. 17 0 20 0.05 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................GATAAGGTAATAAGGAT............................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
...................................................................TTGCCCATAGACTATCAGCCTC................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................AGTTCTCTCTTACTTCAAA.............................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................................GCGAGTGTTAAGGTAGA........................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:13579286-13579535 + dsi_6134 TTCT-ATTTATTTTGTTTT-TGAATT----------TTCAAGAGATAATTAAATTTCTCGCTCACACTTC---CAGCTGAGTAACGGGTATCTGATAGTCGGAGAACTCAACTATAACATC---------------------------------------------------TTTTGT---TATTA----------------------------------------------------ATG-AAAATACCAGAAAAAATAATTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAATAAATTATTTCTATT-----------CTA-TTCTATTATAT----------TATTCCTATTT-----ACACATGTAGG----------------------------TA--------------ATTC--GAATATGGATTTTGAAACGGGAGAGCATCATTACCAATACAAG
droSec2 scaffold_1:10417172-10417417 + TTTGTATTTATTTTGTTTT-TGAATT----------TCCAAGAGATAATTAAATTTCTCGCTCACACTTC---TAGCTGAGTAACGGGTATCTGATAGTGGGAGAACTCAACTATAACATC---------------------------------------------------ATTTGT---TATTA----------------------------------------------------ATG-AAAATGCCACAAAAAATAATTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAATAAATTATTTGTATT-----------CTA-TTCTAT---------------TATTCCTATTT-----ACATATATAGG----------------------------TA--------------ATAC--GAATATGGATTTGGAAACAGGAGAGCAGCATTACCAATACAAG
dm3 chr2R:12908698-12908944 + TTCT-ATTTATTTTGTTTT-CGAATT----------TCTATGAGATAA--AAAT-------------T---TCCAGCAGAGTAACGGGTATCTAATAGCCGGAAAACTCGACTATAACATT---------------------------------------------------TTCTTTTGTAATTA----------------------------------------------------ATG-AAAATACCACAAAAAATAACCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAATAAATTATTTCTAACATAG-------CTA----TAAAAT--TTAGTTACTATATAAATATTT-----ACATATGTAGG----------------------------TA--------------ACAC--GAATATGGATTTTGAAACTGGGGAGCACCAATACCAATACAAG
droEre2 scaffold_4845:434340-434599 - TTCA-TTTTATTTCTTTCC-CAAATTTTACCAATTATCCAGAAAATTTTGATATTTTTCGATTGCACTTCCACTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATT---------------------------------------------------CCCTCTTGTTTTTA--------------------------------------------------------TAATAA-----------------------------------------------------------------------------------------------------------------------------------CTTAAA-----------------------------------------------------TA--A------AT-TA------CTAT--GTTTTAAA--------TAC---TCTAATATACTAAAA---TACTTTAAAGTATTCC-----------AATACAAGGAATTCATACTGAAATACTGAAT-TTATACAAACGGCCGTGCACACAAATGCAAG
droYak3 v2_chr3h_random_002:667059-667293 + TTCA-ATTTCTACTGATAT-----------------TTTAGACAATGTGAACATTTCTCGTTCGCAGTTTCACTAGCTAAGTAACGGTGATTTGGTAGTCGGGGAACTCGACTACAGCAAT---------------------------------------------------TTCTCTTCA------------------------------------------------------------------------------------------------------------TTTGCTTTTCAGTGTTATGTTAATTTAGAATTTCACTTTA----------------------------------------------------------------------------------------------ATTAAAATATTTCTATT-----------TAA-TGTAAATGTAT----------TTTCTAGATTA-----ATGCGTGAAGA----------------------------AG--------------AATC----------ACTTGAAAAC-ATAAAGCAATATTA----------
droEug1 scf7180000409672:2209533-2209798 - TCTG-ACTCAACTAAGTAGTACAAAT----------TATCAAACGTTATAAATTGTCTTTATCAAGAGCC---AACTTCCGTAT-------CTAACG----------TTAGATTCAACACCTCTTATCAGATTTAGAAAGAGTATTTGTGTATATCACGTATCAAAAAGGTTCTTTCTATTTTTGG----------------------------------------------------GTA-AATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAG--ATTGCAAT--------TAT---ATTAATATACATATGTTGGATTTTAAATTATATAGAGC-----CA--------------TGGC--CAACATCAACGTGGAAACAAGCGGTCACCGTTATTATTATAAA
droBia1 scf7180000301754:5156447-5156729 + ATCA-ATTTATTCAGTGTT-TTA-------------------------------------------------------------------------------GACTTTCATTAAAAATGTT---------------------------------------------------TTTTCGTTTTTTTCCAACTTATATAGCTGAATCCAATAGGACCTTACATTAGCATTTACTGATCGG----------------------------------------------------------------------------------------------------------------AA-ACTAGGTTCTGAAGCTTGTATAACAGCAACAAAAAAAATCATTACTCTATTAAAATGCATACTTATTACCAATAAAGTATGATTACT-TAG-------CCT----TAAAAA--TT--------------------------------------GATTTTCTTTTATCCAGAGCTTTTTAA--------------AAAC--CAACATGGACTTTGAAGCGAGAGGGCAGCAATACCATTACAAG
droTak1 scf7180000415345:130073-130260 - TACT-TCACC--------------------------------------------TCCTTGCTCA----CCTTTTAGCTTAGTAAAGAGTATCTGATAGTCGAGGTGCTCGACTACAGCGTT---------------------------------------------------CTCTCTTCTCTCTA----------------------------------------------------ATT-AAAACATA--AGAAAATCTTTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAACGAATTATTTGAATT--AG-------TTA-TTTACT---------T------AATATTATTTATTGCATACCCTTAGG----------------------------CT---------------TTC--GAATAAAATTTTT------------------------------
droEle1 scf7180000491214:1429494-1429693 - ATTG-AAATGTGATGTGTT-GT------------------------------------------------------------------GATGAGGTATATGAGGTATTTAATAA---ATTA---------------------------------------------------ATTATT---TATTA----------------------------------------------------AATAATAGTGAA--ATAAAAAAGTTAAATTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAATTCGAATT--TCTCATAGTGT-TTATTA----------------------------------------------CATTTTATATTATCCAGAGCCATTTTC--------------AAAC--CAACATGGACTTTGAGACGGGAAACCAGCAATACCATTACAAG
droRho1 scf7180000780158:24612-24827 - TCTC-------------------------------------------------------CCTCGCACTCCCTTTACCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTT---------------------------------------------------CTCTCTTGTTTTTGAAAATAAT---AATATGTAAATTAGAAAATTTCATAAAGGTCTCAAAATCGG----------------------------------------------------------------------------------------------------------------TGCACCATATTTTAAA-------------------------------------------------------------------------------------------------------G--------CTCTTAT---TTTTACGTTCCTAGGTA-AAGTTTAAATTATCT---------------------------------------GCTTTAGGAACTGGAAGGCACC----CCGATACGA-
droFic1 scf7180000453948:2519831-2520019 - ACGA-ATTTATCCTATTTC-TGCAAA----------TATATG--------------------------------------------------------------------------------------------------------------------------------------------TTTT----------------------------------------------------GAA--CCTA---TAAAAAAATCGGTATTTTTAGAGTAGAAAATTCTGTTCTCCTGTTTACAAAA-----------------------------------------------------------------------------CTTAAA-----------------------------------------------------TT--G------AT-TTTTTTTT----------T------------------------------------AATTTCTATTATCCA-----------AATAGAACCGACTTAAAT--GAATATGGACTATGAAACAAGAGGCCTCCAATACCAATACAAG
droKik1 scf7180000302470:1344440-1344667 + AACT-ATTATTTGACTGTG-CTA------------------AAGAG------------------------------------ACAGTGTACCTAAAAGTAGGCTA---------CAA-------------------------------------------------------ATGTGT---CCTTT----------------------------------------------------AAG-AACAA---AGGAAAAATACATATA---------------------------TATTAAAATATTATATTATATAAAATTGTTAGTCTAATTTAAAAACAACAATTTCAATAAACATTT-----------------------------------------------------------------------------------------------TTTTTG---------------------------------------------------TACATTTTCCAGTGCCCCATTA--------------AGAT--CAACATGGAGTATGATACAAACTACCAGCAATATCACTACAAG
droAna3 scaffold_13266:13691120-13691134 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACGGATATAAG
droBip1 scf7180000396759:2446640-2446721 + AAAA-TATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTA-----------CT-TTTCTGCATTCT----------TTAT--------------------------------------TCTAGTGCCAAATAA--------------AGAT--AATT------------ATGGCGGTCCTACAGCACGGATATAAG
dp5 3:7332347-7332385 - AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACACTGATGTGAATCAGATGCATTACCATTATAAG
droPer2 scaffold_2:7533201-7533215 - C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTACCATTATAAG
droWil2 scf2_1100000004513:4928718-4928724 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAG
droVir3 scaffold_13324:2534414-2534431 - GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATAGCTATGGG
droMoj3 scaffold_6496:26351677-26351682 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAG
droGri2 scaffold_15112:4846333-4846338 + TGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCT-ATTTATTTTGTTTT-TGAATT----------TTCAAGAGATAATTAAATTTCTCGCTCACACTTC---CAGCTGAGTAACGGGTATCTGATAGTCGGAGAACTCAACTATAACATC---------------------------------------------------TTTTGT---TATTA----------------------------------------------------ATG-AAAATACCAGAAAAAATAATTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAATAAATTATTTCTATT-----------CTA-TTCTATTATAT----------TATTCCTATTT-----ACACATGTAGG----------------------------TA--------------ATTC--GAATATGGATTTTGAAACGGGAGAGCATCATTACCAATACAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................TGAGTAACGGGTATCTGATAGTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26207.701540000007806907000000
.............................................................................TGAGTAACGGGTATCTGATAGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23206.351270000005607100000000
.............................................................................TGAGTAACGGGTATCTGATAGTCGGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28172.41410000002111800010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTTCTATT-----------CTA-TTCTA........................................................................................................................................2021.00200000200000000000
...................................................................................................CGGAGAACTCAACTATAACATC---------------------------------------------------TT......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAACGGGAGA...................1511.00100000000001000000
.......................................................................................GTATCTGATAGTCGGAGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.8315000001500000000000
.............................................................................TGAGTAACGGGTATCTGATAGTCGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27170.761300010040410030000
.............................................................................TGAGTAACGGGTATCTGATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.30600000000006000000
.....................................................................C---CAGCTGAGTAACGGGTATCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.18200000000000020000
.................................................................................TAACGGGTATCTGATAGTCGGAGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.11100000000100000000
................................................................................GTAACGGGTATCTGATAGTCGGAGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.11100100000000000000
...........................................................................GCTGAGTAACGGGTATCTGATAGTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28180.11200000001100000000
...............................................................................AGTAACGGGTATCTGATAGTCGGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26190.11200000010100000000
...............................................................................AGTAACGGGTATCTGATAGTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200000020000000000
.............................................................................TGAGTAACGGGTATCTGATAGTCGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10200000000200000000
.............................................................................TGAGTAACGGGTATCTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200000000002000000
...........................................................................GCTGAGTAACGGGTATCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200000000002000000
............................................................................CTGAGTAACGGGTATCTGATAGTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10200000000200000000
.........................................................................CAGCTGAGTAACGGGTATCTGATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.07100000001000000000
.........................................................................CAGCTGAGTAACGGGTATCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.07100000000000010000
.............................................................................................GATAGTCGGAGAACTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16160.06100000000001000000
.....................................................................................GGGTATCTGATAGTCGGAGAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23160.06100000000010000000
.....................................................................................GGGTATCTGATAGTCGGAGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22160.06100000010000000000
.............................................................................TGAGTAACGGGTATCTGATAGTCGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28180.06100000010000000000
.................................................................................TAACGGGTATCTGATAGTCGGAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.05100000000001000000
.............................................................................TGAGTAACGGGTATCTGATAGTCGGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28190.05100000010000000000
................................................................................GTAACGGGTATCTGATAGTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000001000000
.............................................................................TGAGTAACGGGTATCTGATAGTCGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000010000000000
..............................................................................GAGTAACGGGTATCTGATAGTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000000000
..........................................................................................TCTGATAGTCGGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000010000000
.................................................................................TAACGGGTATCTGATAGTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000001000000000
.....................................................................................GGGTATCTGATAGTCGGAGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000010000000
......................................................................................GGTATCTGATAGTCGGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000100000000
..........................................................................AGCTGAGTAACGGGTATCTGATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000001000000
............................................................................CTGAGTAACGGGTATCTGATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000001000000000
.................................................................................TAACGGGTATCTGATAGTCGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000000000
..................................................................................AACGGGTATCTGATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
...................................................................................ACGGGTATCTGATAGTCGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
droSec2
TTTGTATTTATTTTGTTTT-TGAATT----------TCCAAGAGATAATTAAATTTCTCGCTCACACTTC---TAGCTGAGTAACGGGTATCTGATAGTGGGAGAACTCAACTATAACATC---------------------------------------------------ATTTGT---TATTA----------------------------------------------------ATG-AAAATGCCACAAAAAATAATTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAATAAATTATTTGTATT-----------CTA-TTCTAT---------------TATTCCTATTT-----ACATATATAGG----------------------------TA--------------ATAC--GAATATGGATTTGGAAACAGGAGAGCAGCATTACCAATACAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATGGATTTGGAAACAGGAGAGC.................2611.0010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGAGCAGCATTACC........1911.0011000
.........................................................................TAGCTGAGTAACGGGTATCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001
dm3
TTCT-ATTTATTTTGTTTT-CGAATT----------TCTATGAGATAA--AAAT-------------T---TCCAGCAGAGTAACGGGTATCTAATAGCCGGAAAACTCGACTATAACATT---------------------------------------------------TTCTTTTGTAATTA----------------------------------------------------ATG-AAAATACCACAAAAAATAACCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------TGCCAATAAATTATTTCTAACATAG-------CTA----TAAAAT--TTAGTTACTATATAAATATTT-----ACATATGTAGG----------------------------TA--------------ACAC--GAATATGGATTTTGAAACTGGGGAGCACCAATACCAATACAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATTTTGAAACTGGGGAG..................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAACTGGGGAGCACC..............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGATTTTGAAACTGGGG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGATTTTGAAACTGGGGA...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAACTGGGGAGCACCAA............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAACTGGGGAGCACCAATACC........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................CACAAAAAATAACCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------TGC..............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGATTTTGAAACTGGG.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................AAAT-------------T---TCCAGCAGAGTAACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................AGTAACGGGTATCTAATAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGATTTTGAAACTGGG.....................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................ACAAAAAATAACCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------TGC..............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--GAATATGGATTTTGAAACT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................GTAACGGGTATCTAATAGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAACTGGGGAGCACCAATA..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................AGTAACGGGTATCTAATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
droEre2
TTCA-TTTTATTTCTTTCC-CAAATTTTACCAATTATCCAGAAAATTTTGATATTTTTCGATTGCACTTCCACTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATT---------------------------------------------------CCCTCTTGTTTTTA--------------------------------------------------------TAATAA-----------------------------------------------------------------------------------------------------------------------------------CTTAAA-----------------------------------------------------TA--A------AT-TA------CTAT--GTTTTAAA--------TAC---TCTAATATACTAAAA---TACTTTAAAGTATTCC-----------AATACAAGGAATTCATACTGAAATACTGAAT-TTATACAAACGGCCGTGCACACAAATGCAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATACTGAAATACTGAAT-TTATAC.........................2511.0011000000
droYak3
TTCA-ATTTCTACTGATAT-----------------TTTAGACAATGTGAACATTTCTCGTTCGCAGTTTCACTAGCTAAGTAACGGTGATTTGGTAGTCGGGGAACTCGACTACAGCAAT---------------------------------------------------TTCTCTTCA------------------------------------------------------------------------------------------------------------TTTGCTTTTCAGTGTTATGTTAATTTAGAATTTCACTTTA----------------------------------------------------------------------------------------------ATTAAAATATTTCTATT-----------TAA-TGTAAATGTAT----------TTTCTAGATTA-----ATGCGTGAAGA----------------------------AG--------------AATC----------ACTTGAAAAC-ATAAAGCAATATTA----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................CGGGGAACTCGACTACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05110000000000
droEug1
TCTG-ACTCAACTAAGTAGTACAAAT----------TATCAAACGTTATAAATTGTCTTTATCAAGAGCC---AACTTCCGTAT-------CTAACG----------TTAGATTCAACACCTCTTATCAGATTTAGAAAGAGTATTTGTGTATATCACGTATCAAAAAGGTTCTTTCTATTTTTGG----------------------------------------------------GTA-AATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAG--ATTGCAAT--------TAT---ATTAATATACATATGTTGGATTTTAAATTATATAGAGC-----CA--------------TGGC--CAACATCAACGTGGAAACAAGCGGTCACCGTTATTATTATAAASizeHit CountTotal NormTotal
No Reads
droBia1
ATCA-ATTTATTCAGTGTT-TTA-------------------------------------------------------------------------------GACTTTCATTAAAAATGTT---------------------------------------------------TTTTCGTTTTTTTCCAACTTATATAGCTGAATCCAATAGGACCTTACATTAGCATTTACTGATCGG----------------------------------------------------------------------------------------------------------------AA-ACTAGGTTCTGAAGCTTGTATAACAGCAACAAAAAAAATCATTACTCTATTAAAATGCATACTTATTACCAATAAAGTATGATTACT-TAG-------CCT----TAAAAA--TT--------------------------------------GATTTTCTTTTATCCAGAGCTTTTTAA--------------AAAC--CAACATGGACTTTGAAGCGAGAGGGCAGCAATACCATTACAAGSizeHit CountTotal NormTotal
No Reads
droTak1
TACT-TCACC--------------------------------------------TCCTTGCTCA----CCTTTTAGCTTAGTAAAGAGTATCTGATAGTCGAGGTGCTCGACTACAGCGTT---------------------------------------------------CTCTCTTCTCTCTA----------------------------------------------------ATT-AAAACATA--AGAAAATCTTTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------TCTAAACGAATTATTTGAATT--AG-------TTA-TTTACT---------T------AATATTATTTATTGCATACCCTTAGG----------------------------CT---------------TTC--GAATAAAATTTTT------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ATTG-AAATGTGATGTGTT-GT------------------------------------------------------------------GATGAGGTATATGAGGTATTTAATAA---ATTA---------------------------------------------------ATTATT---TATTA----------------------------------------------------AATAATAGTGAA--ATAAAAAAGTTAAATTTAA--------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAATTCGAATT--TCTCATAGTGT-TTATTA----------------------------------------------CATTTTATATTATCCAGAGCCATTTTC--------------AAAC--CAACATGGACTTTGAGACGGGAAACCAGCAATACCATTACAAGSizeHit CountTotal NormTotal
No Reads
droRho1
TCTC-------------------------------------------------------CCTCGCACTCCCTTTACCTGAGTAACGGGTATCTGATAGTCGGGGCACCCGACTATAGCGTT---------------------------------------------------CTCTCTTGTTTTTGAAAATAAT---AATATGTAAATTAGAAAATTTCATAAAGGTCTCAAAATCGG----------------------------------------------------------------------------------------------------------------TGCACCATATTTTAAA-------------------------------------------------------------------------------------------------------G--------CTCTTAT---TTTTACGTTCCTAGGTA-AAGTTTAAATTATCT---------------------------------------GCTTTAGGAACTGGAAGGCACC----CCGATACGA-SizeHit CountTotal NormTotal
No Reads
droFic1
ACGA-ATTTATCCTATTTC-TGCAAA----------TATATG--------------------------------------------------------------------------------------------------------------------------------------------TTTT----------------------------------------------------GAA--CCTA---TAAAAAAATCGGTATTTTTAGAGTAGAAAATTCTGTTCTCCTGTTTACAAAA-----------------------------------------------------------------------------CTTAAA-----------------------------------------------------TT--G------AT-TTTTTTTT----------T------------------------------------AATTTCTATTATCCA-----------AATAGAACCGACTTAAAT--GAATATGGACTATGAAACAAGAGGCCTCCAATACCAATACAAGSizeHit CountTotal NormTotal
No Reads
droKik1
AACT-ATTATTTGACTGTG-CTA------------------AAGAG------------------------------------ACAGTGTACCTAAAAGTAGGCTA---------CAA-------------------------------------------------------ATGTGT---CCTTT----------------------------------------------------AAG-AACAA---AGGAAAAATACATATA---------------------------TATTAAAATATTATATTATATAAAATTGTTAGTCTAATTTAAAAACAACAATTTCAATAAACATTT-----------------------------------------------------------------------------------------------TTTTTG---------------------------------------------------TACATTTTCCAGTGCCCCATTA--------------AGAT--CAACATGGAGTATGATACAAACTACCAGCAATATCACTACAAGSizeHit CountTotal NormTotal
No Reads
droAna3
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACGGATATAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAAA-TATTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTA-----------CT-TTTCTGCATTCT----------TTAT--------------------------------------TCTAGTGCCAAATAA--------------AGAT--AATT------------ATGGCGGTCCTACAGCACGGATATAAGSizeHit CountTotal NormTotal
No Reads
dp5
AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACACTGATGTGAATCAGATGCATTACCATTATAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTACCATTATAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATAGCTATGGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:11 PM