ID:

dsi_6124

 Coordinate:

2r:10527875-10528024 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCTAAACCAAAACCTAACTTAGTGCAAAAACATGTATCCAGTTGGACAACGTAAGTGATTGCGACTAAAAGAACAGAAAGACATTTTCCAGACAGAACAAAAAGAAGAATACAAAAATAGGCGACTGCTGCCACAAGTTTCCCCCACTCCATGCCACCCCTTTGCCCAGCCACCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTCTATATATGATACATACACACGTGCAACTGCCACACAGACAG
**************************************************((((....)))).......((((((..(((((.(((((...............)))))...........(((((.....((....(((.......)))....)).......)))))..................)))))...))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.................................GTATCCAGTTGGACAACGTAAGT.................................................................................................................................................................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0
...........................................................TGCGACTAGAAGAACAGAAAGACAA...................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0
.............................ACATGTATCCAGTTGGACAACAGT..................................................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0
...............................ATGTATCCAGTTGGACAAC........................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
...................................ATCCAGTTGGACAACGTAAGTGATTG............................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0
......CCAAAACCTAACTTAGTGCAAAAACA.......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
................................TGTATCCAGTTGGACAAC........................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0
............................AACATGTATCCAGTTGGACAAC........................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0
...................................ATCCAGTTGGACAACGTAAGTGATTGC............................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0
................................TGTATCGAGTTGGAC........................................................................................................................................................................................................... 15 1 7 0.71 5 0 0 0 5 0 0 0
...........ACCTAACGTAGAGCAAAA............................................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 0 1 0
................................TGTATCGAGTTGGACC.......................................................................................................................................................................................................... 16 2 20 0.30 6 0 0 0 5 0 0 1
...........................................................................................................................................................................ACCCACTAGTCAAGT................................................................ 15 1 7 0.14 1 0 0 0 0 0 0 1
.................................GTATCGAGTTGGACA.......................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 1
.........AAACCTCACGTAGAGCAAAAA............................................................................................................................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 1 0
.............................................TGAACGTAAGTGATTGAGA.......................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 2 0

Anti-sense strand reads

GGATTTGGTTTTGGATTGAATCACGTTTTTGTACATAGGTCAACCTGTTGCATTCACTAACGCTGATTTTCTTGTCTTTCTGTAAAAGGTCTGTCTTGTTTTTCTTCTTATGTTTTTATCCGCTGACGACGGTGTTCAAAGGGGGTGAGGTACGGTGGGGAAACGGGTCGGTGGGTGATTAGTTCAAAAGCTACAAGATGAACGTGGAGATATATACTATGTATGTGTGCACGTTGACGGTGTGTCTGTC
**************************************************((((....)))).......((((((..(((((.(((((...............)))))...........(((((.....((....(((.......)))....)).......)))))..................)))))...))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR1275485
Male prepupae		 SRR553487
NRT_0-2 hours eggs
 SRR1275487
Male larvae
...TTTGGTTTTGGATGGAA...................................................................................................................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0 0
.........................TTTTTGTACTTAGGGCATCC............................................................................................................................................................................................................. 20 3 5 0.20 1 0 1 0 0 0 0
...........................................................ACGCTGATATTCTTGTG.............................................................................................................................................................................. 17 2 10 0.10 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................TGATTGTGTGCAGGTTGACG........... 20 3 13 0.08 1 0 0 0 1 0 0
..............................................................................................CTTGTTTTTCTTCTTTGGTTTGT..................................................................................................................................... 23 3 13 0.08 1 0 0 0 0 1 0
...........................................................................................................................................................................................................................TGTTTGGGTGCAGGTTGACG........... 20 3 19 0.05 1 0 0 0 0 0 1
......................................................................................................................TCCGCTCACGACGGTAT................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10527825-10528074 - dsi_6124 CCTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GATT-----------------G-----------------CG--ACTAAAAGAACA-GAAA----------------------G----ACATTTTCCAGACAGAACAA----------AAAGAAGAATACAA-AAATAGGCGA-------CTG---CTGCCACAAGTTTCCCCCACT-----CCATGCCA---------------------------------------------------------CCCC--TTTGCCC----------------------------------------------------------------------------------------------------------------------------------------AGCCA----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTCTA-TATAT--------------------------GAT--ACATACACAC---------------------------------GTGCAACTG----------CCACACAGAC---------------------------------------------AG
droSec2 scaffold_239:10681-10935 - CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GATT-----------------G-----------------CG--ACTAAAAGAACA-GAAA----------------------G----ACAATTTCCAGACAGAACAA----------AAAGAAGAATACAA-AAATAGGCGA-------CTG---CTGCCACAAGTTTCCCCCACT-----CCATGCCAC-----------------------------------CC------------AGCT---CCCC--TTTGCCC----------------------------------------------------------------------------------------------------------------------------------------AGCCA----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTATA---TAT--------------------------GAT--ACATACACAC---------------------------------GTGCAACTG----------CCACACAGAC---------------------------------------------AG
dm3 chr2R:9840315-9840603 - CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTAGCAAATGATGATTG-----------------CG--ACTAAAAGAACA-GACA----------------------G----ACAATTTCCAGACAGAACAA----------AAAGAAGAATACAA-AAATAGGCGA-------TTG---CTGCCACAAGTTTCCCTCACA-----CCATGCCAC-----------------------------------ACAGCCC----CCCAGCT---CCCC--TTCGCCC----------------------------------------------------------------------------------------------------------------------------------------AGCCG----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTTTA---TGC-----ATATACA------TATGT---GAT--ACATACACAC---------------------------------GTGCAAATG----------CCACACAGAC---------------------------------------------AG
droEre2 scaffold_4845:15981549-15981833 + CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTGTCACATGATGAATG-----------------AA--ACTAAAAGAACC---------------------------G----ATAATTTCCAGACAGAACAA----------AAAGGGGAATTCCA-AAATATGCGA-------CTG---CTGTCACAAGTTTTCC-CACA-----ACATATCGC-----------------------------------CC------------------TGCCC--CTCGCCC----------------------------------------------------------------------------------------------------------------------------------------ACCCACCAGCCCACTAATCAAGTTTTTGATGTTCCACTTGCACCTATG---TGTATGTGGTACATGTACATG-----CTC---GTACGTACACAT---------------------------------GTGCAACTG----------CCACACAGAC---------------------------------------------AG
droYak3 2R:7115138-7115419 + CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTGCCAAATGATGATTG-----------------AG--ACTAAAAGAACA---------------------------G----ACAATTTCCAAACAGAATGA----------AAAGCGGAATACAG-AAATAGGCGA-------CTG---CTGCCACAAGTTTTCC-CACACCGTTCCATACCAA-----------------------------------CC------------------AGCCC--CTCGCCC----------------------------------------------------------------------------------------------------------------------------------------ACCCA----CCCACTAATCAAGTTTTCGATGTTCCACTTGCACCTATA---TGC----GATTTACGTGTATG-----CTC---GCACATACACAC---------------------------------TTGCAACTG----------CCACACAGAC---------------------------------------------AG
droEug1 scf7180000409462:3005563-3005854 + CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAGA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTAGCAAATGCTGAACA---------------------------AGAATG-AAAA----------------------G----ACAATTTCCAGACTGACAAATAAGAAATGAAAAAGAAAA--TGAAAAA----CT-------GCTG---CTGCCACAAGTTTCCCACAT-------TACACCAC-----------------------------------CT---CCCCC------GA---CCCT--CTCGCCC----------------------------------------------------------------------------------------------------------------------------------------AACCA----CTCACTAATCAAGTTTTCGATGTTCTACTTGCACCAATA-T-TAT--------------------------GAT--ATATGCATA-----------CAAGTGCCAGAACTTATCGTTGTGTGCAACTC----------CCACACAGGC-AAG------------------------------------------C
droBia1 scf7180000302291:287570-287844 + CCTAAAC---------C--AA-TCCT---AACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGT-GG---CTACCAGATGGTAT---------GGGAGA-------AGAATAAGAGAACA---------------------------G----ACGATTTCCCGACCGAAGGA----------AAA--------CTGAAAA----CT-------GCAG---CTGCCACAAGTTTCCCGCAC--------ATGCCCA-----------------------------------CC------------A-CC---CCCT--GTCGTTG----------------------------------------------------------------------------------------------------------------------------------------AACCA----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACATAGG---TGTA---GAT--ATGTGTA----------------------------TGCATCGCAAGTGCCAGACTCCACGGTAGTGTGCAACT-----------CCACAC-------------------------------------------------AG
droTak1 scf7180000415401:786871-787143 + CTTAAAC---------C--AA-ACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGT-GG---CTACCGAGTGATGA---------AGAAGA-------AGAATGAAAGAAAA---------------------------G----ACAATTTCCAGACTGAAAAA----------A-----CAACACTGAAAA----CT-------GCTGCTGCTGCCAC---CTTCCCC---------------------------------------------------------------------CT---CCCC--CTCGTTA----------------------------------------------------------------------------------------------------------------------------------------AACCA----CCCACTAATCAAGTTTTAGATGTTCTACTTGCACCCATA---TG------ATATGCA------TACGT----AT--ACGTA--------TACATTGCAAGTGCCAGACTTTGCAGTAGTGTGCAACTC----------CCATAC-------------------------------------------------AG
droEle1 scf7180000491271:183769-184040 - CTTAAAA---------C--AA-ACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGT-GA---CTAGCGAATGAAAA---------AGAAGA-------AG-CTAAAAGAATA---------------------------G----ACAATTTTCAGACTGAATAA----------------------TAAAAA----CT-------GCTG---CTGCCACAAGTCCC---CAAGCCA--TCACACCT----------------------------------C-CT-------------------TCCC--CTTGCTC----------------------------------------------------------------------------------------------------------------------------------------G-CCA----TCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTATA---TATGT---AT--------------------------ATA----TATTTATATTGCAAGTGCTAGTCTTTATCGAGGTGTGCAATTT----------CCACACA--C---------------------------------------------AG
droRho1 scf7180000779260:14308-14587 - CTTAAAC---------C--AA-ACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGT-GG---CTAGTATATGATGA---------AGAAGA-------AG-CTAAAAGAATA---------------------------G----ACAATTTCCAGACTAAGTAA----------------------TAAAAA----CT-------GCTG---CTGCCACAAGTTCCCCACACA--A--ACACACC-------------------------------------CC------------------CGCCT--CTCGCCC----------------------------------------------------------------------------------------------------------------------------------------A-TCA----TCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTATA-CAAAT-------------------CC--------GTACATATATATATGTATTTTGCAAGTGCTGGACTTCATTGTGGTGCGCGAGTG----------GCACACA--C---------------------------------------------AG
droFic1 scf7180000454066:1769700-1769987 + CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTATC-----------GCAAAAAAGAAGAAAATAAG--ACTAAAAGAAA----AA----------------------G----TCAATTTCCAGACTAAA---------------------------GAAA----CT-------GCTG---CTGCCACAAGTTTCCCA---------ATATGCCCC-----------------------------------CC-----------CATTT--CCCCC--TTCGCCC----------------------------------------------------------------------------------------------------------------------------------------A-TCA----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTACA---TGT----GATATATA------TATG-TAC---GTACATA----TATATAAATTGCAAGTGCCAGACTTTATAGTAGTGTGAAACTC----------CCACAC-------------------------------------------------AG
droKik1 scf7180000302817:290716-290994 - CTTAAAA---------C--AAAACCTTAAAACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGTTGG---ATAGCGAGCAAAGC--------------G-------AG-CTAAAAACACACGAAAGACAATGCAAGAGAGTCAAAG-------------------------A----------A---AAGAA--AGAAAAA----CC-------GCTG---CTGCCACAAGTCTCCAA-------------GAAA--------------------------------C-C-CC------------------C---------GCCT----------------------------------------------------------------------------------------------------------------------------------------CCCCG----CCCACAAATCAAGTTTTTGATGTTCTACTTGCAAAGGTG---TATGTGT----------------------G-------------------------------------------------GCAACTCCAATTGC---ACACACATGC-AGTCAGTTACAAACACACC-TAT-GTCCAT-ACGTCA------CAG
droAna3 scaffold_13266:17150343-17150620 - CCTAAAAATACAAAACAAAAAAACCT---AAATTAG--TGCAAAAGCCATGTATCCAGTTGGACAACGTAAGT-GCAGGCG-----------ATCAA---------------------------------------GAGTGGAGGACACTA---G-------------------------A----------AAAGAACG--A-CAGA-------A-------GCTG---TTGCCACAAGTTTATGTTGCC-----CCAAGACC--------------------------------C-C-CT------------------GGCCC--CTTG---------------------------------------------------------------------------------------------------------------------------------------------GCC----CTTACTAATCTGGTTTTTGAGGTTCTACTTGCAACTACA---TAT-------------------TG-----GA---ACCTA---------------------GTAGTCTTTGC------------TGCCAATTGGCTT-TCAAAGAGCCCAG-------------GTCTGATAGGCCATGGCGTCACAGACACAG
droBip1 scf7180000396735:409145-409401 - CCTAAAAA---AAAACA--AAAACCT---AACTTAG--TGCAAAAGCCATGTATCCAGTTGGACAACGTAAGT-GCAGGCG-----------ATCGG---------------------------------------GAATGGAGGGGACTGAAAGA-----------------------------------------------CAGA-------A-------GCTG---TTGCCACAAGTTTTCCCCAG-------CAC----------------------------------------CC------------------CGCCT--TTC--AG----------------------------------------------------------------------------------------------------------------------------------------ACCCC----CCAACTAATCAAGTTTTTGATGTTCTACTTGGCCTGCCAATGTCT--------------------------GA----------------------------------------GGTAGCCAGTACCTCCAATAGCCA--CCCACGGGC-CAG---C---------GAC-CATGGGCCATGGCGTCACAGACACAG
dp5 3:8153747-8153962 - CTTAAAT---------A--A-AACTT---AACATAG--TGCAAGAA-AATGTATCCAGTCGGTCAACGTAAGT-CGAGGCG-----------ATCGC---------------------------------------CAAAGCAAAATAATCAAAGAC----TTGATACCCAGACTA-----------------------------AAAA----TT-------G-TG---CTGCCATCGCTCCCCCC----------------------------------------------------------------------------------TGA--------------------------------------------------------------------------------------------------------------CAGTACTTACAATAT----ATACCATACA-GCA----CCCACTAATCAAGTTTTTGATGTTCTACGACCACTCCAA------------------------------------------------------------------------------------AACTT----------CTACACAAGG---------------------------------------------CG
droPer2 scaffold_4:2031251-2031470 - CTTAAAT---------A--A-AACTT---AACATAG--TGCAAGAA-AATGTATCCAGTCGGTCAACGTAAGT-CGAGGCG-----------ATCGC---------------------------------------CAAAGCAAAATAATCAAAGAC----TCGATACCCAGACTA-----------------------------AAAA----TT-------G-TG---CTGCCATCGCTCCCCCC----------------------------------------------------------------------------------TGA--------------------------------------------------------------------------------------------------------------CAGTACTTACAATATACATATACCATACA-GCA----CCCACTAATCAAGTTTTTGATGTTCTACGACCACTCCAA------------------------------------------------------------------------------------AACTT----------CTACACAAGG---------------------------------------------CG
droWil2 scf2_1100000004822:1334298-1334620 - CTCTAAC---------T--AAATCAA---ATCAAAGAAAGAAAGAA-AATGTATCCAGTTGGACAACGTAAGT-GTAGACA-----------AGTAA------AAGGA-------AG-TTAAGTGAAGA---------------------------AGAAGATC--ATATAGAACAAGACA----------------------CCAATA----CC-------AATA---CCAATACA---TTGCCACAT----------AAAC--------------------------------C-ACTCACCCTCCCGTGC--CTCCCACCT--TTA--GAAGACCAAATCGTAAGATAAAACACGACTATTAACGAGTAATTTTTCTGTACTTGCTGCTCGATTTGATGTTGGGGGGATTGTTGCAGAAATGCATCACCCACACCCATACATACACACAAC-------------------------------------------------------------------------------------------------------------------------------------------------CTAAATG----------ACA-------------------------------------TAGAACCCAGAACCCAG
droVir3 scaffold_12875:6220856-6220922 + CTTAAAC---------A--AATAC---------TAG--TGCAAA----ATGTATCCAGTTGGACAACGTAAGT-GG---CG-----------ATTGC-----------------A--ATTGAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:23811306-23811384 - CTTAAAC---------A--AATAC---------TAG--TGCAAA----ATGTATCCAGTTGGACAACGTAAGT-GG---CAA----AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAATT--------------------GCAATTG----------C-AAAAA--A---------------------------------------------AC
droGri2 scaffold_15112:1109983-1110223 + CTTAAAA---------C--AAATA--------CTAG--TGCAAA----ATGTATCCAGTTGGACAACGTAAGT-GG--ACG-----------ATTGA-----------------A--AATACAA-------------------------------------------------------------------CAAGAACTATAACA-AAACAGGCCACAACAAATCT---CTGCCACATGTTACACACACA--C--ACACACA-CACACTCACACACAAAACCCATTCAGACATACCCC-CT---------TCCAACT---CCCCTCTTC----------------------------------------------------------------------------------------------------------------------------------------------------------AGTACAGCTCTTTGATGTTCTACTTTTGCAAATG---CA-------------------AAC-----------------------------------------------------GT-AAACAC----------ACACACAGGC---------------------------------------------AC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GATT-----------------G-----------------CG--ACTAAAAGAACA-GAAA----------------------G----ACATTTTCCAGACAGAACAA----------AAAGAAGAATACAA-AAATAGGCGA-------CTG---CTGCCACAAGTTTCCCCCACT-----CCATGCCA---------------------------------------------------------CCCC--TTTGCCC----------------------------------------------------------------------------------------------------------------------------------------AGCCA----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTCTA-TATAT--------------------------GAT--ACATACACAC---------------------------------GTGCAACTG----------CCACACAGAC---------------------------------------------AGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................GTATCCAGTTGGACAACGTAAGT-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
.............................................A-CATGTATCCAGTTGGACAACAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
................................................ATGTATCCAGTTGGACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
....................................................ATCCAGTTGGACAACGTAAGT-GATT-----------------G-----------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
......C---------C--AAAACCT---AACTTAG--TGCAAAAA-CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.................................................TGTATCCAGTTGGACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
............................................AA-CATGTATCCAGTTGGACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000000000
....................................................ATCCAGTTGGACAACGTAAGT-GATT-----------------G-----------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
droSec2
CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GATT-----------------G-----------------CG--ACTAAAAGAACA-GAAA----------------------G----ACAATTTCCAGACAGAACAA----------AAAGAAGAATACAA-AAATAGGCGA-------CTG---CTGCCACAAGTTTCCCCCACT-----CCATGCCAC-----------------------------------CC------------AGCT---CCCC--TTTGCCC----------------------------------------------------------------------------------------------------------------------------------------AGCCA----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTATA---TAT--------------------------GAT--ACATACACAC---------------------------------GTGCAACTG----------CCACACAGAC---------------------------------------------AGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................A-CATGTATCCAGTTGGACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
........................................................................................................................AAAAGAACA-GAAA----------------------G----ACAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
dm3
CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTAGCAAATGATGATTG-----------------CG--ACTAAAAGAACA-GACA----------------------G----ACAATTTCCAGACAGAACAA----------AAAGAAGAATACAA-AAATAGGCGA-------TTG---CTGCCACAAGTTTCCCTCACA-----CCATGCCAC-----------------------------------ACAGCCC----CCCAGCT---CCCC--TTCGCCC----------------------------------------------------------------------------------------------------------------------------------------AGCCG----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTTTA---TGC-----ATATACA------TATGT---GAT--ACATACACAC---------------------------------GTGCAAATG----------CCACACAGAC---------------------------------------------AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................AA-CATGTATCCAGTTGGACAACAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25119.001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030221000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....AAC---------C--AAAACCT---AACTTAG--TGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................T---AACTTAG--TGCAAAAA-CATGTATCCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CAAGTTTCCCTCACA-----CCATGCCAC-----------------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ATGTATCCAGTTGGACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TGCAAAAA-CATGTATCCAGTTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AAAA-CATGTATCCAGTTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AAAACCT---AACTTAG--TGCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AAAAA-CATGTATCCAGTTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GGCGA-------TTG---CTGCCACAAGTTTCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CAGTTGGACAACGTAAGT-GG---CT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................GATTG-----------------CG--ACTAAAAGAACA-GA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AA-CATGTATCCAGTTGGACAACCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................ACTTAG--TGCAAAAA-CATGTATCCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TCCAGACAGAACAA----------AAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................TTTCCAGACAGAACAA----------AAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................GATGATTG-----------------CG--ACTAAAAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................ACA-GACA----------------------G----ACAATTTCCAGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AAAA-CATGTATCCAGTTGGACAACAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATGATTG-----------------CG--ACTAAAAGAACA-TC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AATACAA-AAATAGGCGA-------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................TAG--TGCAAAAA-CATGTATCCAGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AATACAA-AAATAGGCGA-------TTG---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................GATGATTG-----------------CG--ACTAAAAGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................AA----------AAAGAAGAATACAA-AAATAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................ACAA-AAATAGGCGA-------TTG---CTGCCACAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAAGTTTTCGATGTTCT.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CATGTATCCAGTTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGATGTTCTACTTGCACCT...............................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACCT---AACTTAG--TGCAAAAA-CATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CAATTTCCAGACAGAACAA----------AA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................TTAG--TGCAAAAA-CATGTATCCAGTTGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGTTCTACTTGCA..................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACCT---AACTTAG--TGCAAAAA-CATGTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTAG--TGCAAAAA-CATGTATCCAGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................ACA-----CCATGCCAC-----------------------------------ACAGCCC----CC.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................ACAATTTCCAGACAGAACAA----------AA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CAAAAA-CATGTATCCAGTTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AAACCT---AACTTAG--TGCAAAAA-CATGTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AAA-CATGTATCCAGTTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TAG--TGCAAAAA-CATGTATCCAGTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATTTCCAGACAGAACAA----------AAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
droEre2
CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTGTCACATGATGAATG-----------------AA--ACTAAAAGAACC---------------------------G----ATAATTTCCAGACAGAACAA----------AAAGGGGAATTCCA-AAATATGCGA-------CTG---CTGTCACAAGTTTTCC-CACA-----ACATATCGC-----------------------------------CC------------------TGCCC--CTCGCCC----------------------------------------------------------------------------------------------------------------------------------------ACCCACCAGCCCACTAATCAAGTTTTTGATGTTCCACTTGCACCTATG---TGTATGTGGTACATGTACATG-----CTC---GTACGTACACAT---------------------------------GTGCAACTG----------CCACACAGAC---------------------------------------------AGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...AAAC---------C--AAAACCT---AACTTAA--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310001000
droYak3
CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTGCCAAATGATGATTG-----------------AG--ACTAAAAGAACA---------------------------G----ACAATTTCCAAACAGAATGA----------AAAGCGGAATACAG-AAATAGGCGA-------CTG---CTGCCACAAGTTTTCC-CACACCGTTCCATACCAA-----------------------------------CC------------------AGCCC--CTCGCCC----------------------------------------------------------------------------------------------------------------------------------------ACCCA----CCCACTAATCAAGTTTTCGATGTTCCACTTGCACCTATA---TGC----GATTTACGTGTATG-----CTC---GCACATACACAC---------------------------------TTGCAACTG----------CCACACAGAC---------------------------------------------AGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC---------------------------------TTGCAACTG----------CCACACAGAC---------------------------------------------..2312.00200200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACGTGTATG-----CTC---GCAC.....................................................................................................................2111.00101000000000
...............................................CATGTATCCAGTTGGACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
......................................TGCAAAAA-CATGTATCCAGTTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
droEug1
CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAGA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTAGCAAATGCTGAACA---------------------------AGAATG-AAAA----------------------G----ACAATTTCCAGACTGACAAATAAGAAATGAAAAAGAAAA--TGAAAAA----CT-------GCTG---CTGCCACAAGTTTCCCACAT-------TACACCAC-----------------------------------CT---CCCCC------GA---CCCT--CTCGCCC----------------------------------------------------------------------------------------------------------------------------------------AACCA----CTCACTAATCAAGTTTTCGATGTTCTACTTGCACCAATA-T-TAT--------------------------GAT--ATATGCATA-----------CAAGTGCCAGAACTTATCGTTGTGTGCAACTC----------CCACACAGGC-AAG------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
CCTAAAC---------C--AA-TCCT---AACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGT-GG---CTACCAGATGGTAT---------GGGAGA-------AGAATAAGAGAACA---------------------------G----ACGATTTCCCGACCGAAGGA----------AAA--------CTGAAAA----CT-------GCAG---CTGCCACAAGTTTCCCGCAC--------ATGCCCA-----------------------------------CC------------A-CC---CCCT--GTCGTTG----------------------------------------------------------------------------------------------------------------------------------------AACCA----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACATAGG---TGTA---GAT--ATGTGTA----------------------------TGCATCGCAAGTGCCAGACTCCACGGTAGTGTGCAACT-----------CCACAC-------------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droTak1
CTTAAAC---------C--AA-ACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGT-GG---CTACCGAGTGATGA---------AGAAGA-------AGAATGAAAGAAAA---------------------------G----ACAATTTCCAGACTGAAAAA----------A-----CAACACTGAAAA----CT-------GCTGCTGCTGCCAC---CTTCCCC---------------------------------------------------------------------CT---CCCC--CTCGTTA----------------------------------------------------------------------------------------------------------------------------------------AACCA----CCCACTAATCAAGTTTTAGATGTTCTACTTGCACCCATA---TG------ATATGCA------TACGT----AT--ACGTA--------TACATTGCAAGTGCCAGACTTTGCAGTAGTGTGCAACTC----------CCATAC-------------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droEle1
CTTAAAA---------C--AA-ACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGT-GA---CTAGCGAATGAAAA---------AGAAGA-------AG-CTAAAAGAATA---------------------------G----ACAATTTTCAGACTGAATAA----------------------TAAAAA----CT-------GCTG---CTGCCACAAGTCCC---CAAGCCA--TCACACCT----------------------------------C-CT-------------------TCCC--CTTGCTC----------------------------------------------------------------------------------------------------------------------------------------G-CCA----TCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTATA---TATGT---AT--------------------------ATA----TATTTATATTGCAAGTGCTAGTCTTTATCGAGGTGTGCAATTT----------CCACACA--C---------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droRho1
CTTAAAC---------C--AA-ACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGT-GG---CTAGTATATGATGA---------AGAAGA-------AG-CTAAAAGAATA---------------------------G----ACAATTTCCAGACTAAGTAA----------------------TAAAAA----CT-------GCTG---CTGCCACAAGTTCCCCACACA--A--ACACACC-------------------------------------CC------------------CGCCT--CTCGCCC----------------------------------------------------------------------------------------------------------------------------------------A-TCA----TCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTATA-CAAAT-------------------CC--------GTACATATATATATGTATTTTGCAAGTGCTGGACTTCATTGTGGTGCGCGAGTG----------GCACACA--C---------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droFic1
CTTAAAC---------C--AAAACCT---AACTTAG--TGCAAAAA-CATGTATCCAGTTGGACAACGTAAGT-GG---CTATC-----------GCAAAAAAGAAGAAAATAAG--ACTAAAAGAAA----AA----------------------G----TCAATTTCCAGACTAAA---------------------------GAAA----CT-------GCTG---CTGCCACAAGTTTCCCA---------ATATGCCCC-----------------------------------CC-----------CATTT--CCCCC--TTCGCCC----------------------------------------------------------------------------------------------------------------------------------------A-TCA----CCCACTAATCAAGTTTTCGATGTTCTACTTGCACCTACA---TGT----GATATATA------TATG-TAC---GTACATA----TATATAAATTGCAAGTGCCAGACTTTATAGTAGTGTGAAACTC----------CCACAC-------------------------------------------------AGSizeHit CountTotal NormTotal
No Reads
droKik1
CTTAAAA---------C--AAAACCTTAAAACTTAG--TGCAAAAA-CATGTATCCAGTCGGACAACGTAAGTTGG---ATAGCGAGCAAAGC--------------G-------AG-CTAAAAACACACGAAAGACAATGCAAGAGAGTCAAAG-------------------------A----------A---AAGAA--AGAAAAA----CC-------GCTG---CTGCCACAAGTCTCCAA-------------GAAA--------------------------------C-C-CC------------------C---------GCCT----------------------------------------------------------------------------------------------------------------------------------------CCCCG----CCCACAAATCAAGTTTTTGATGTTCTACTTGCAAAGGTG---TATGTGT----------------------G-------------------------------------------------GCAACTCCAATTGC---ACACACATGC-AGTCAGTTACAAACACACC-TAT-GTCCAT-ACGTCA------CAGSizeHit CountTotal NormTotal
No Reads
droAna3
CCTAAAAATACAAAACAAAAAAACCT---AAATTAG--TGCAAAAGCCATGTATCCAGTTGGACAACGTAAGT-GCAGGCG-----------ATCAA---------------------------------------GAGTGGAGGACACTA---G-------------------------A----------AAAGAACG--A-CAGA-------A-------GCTG---TTGCCACAAGTTTATGTTGCC-----CCAAGACC--------------------------------C-C-CT------------------GGCCC--CTTG---------------------------------------------------------------------------------------------------------------------------------------------GCC----CTTACTAATCTGGTTTTTGAGGTTCTACTTGCAACTACA---TAT-------------------TG-----GA---ACCTA---------------------GTAGTCTTTGC------------TGCCAATTGGCTT-TCAAAGAGCCCAG-------------GTCTGATAGGCCATGGCGTCACAGACACAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TAT-------------------TG-----GA---ACCTA---------------------GTAGTCTTTGC------------T.....................................................................2511.001000010
..........................................AAAGCCATGTATCCAGTTGGACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
......................ACCT---AAATTAG--TGCAAAAGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................AAAAAACCT---AAATTAG--TGCAAAAGCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
CCTAAAAA---AAAACA--AAAACCT---AACTTAG--TGCAAAAGCCATGTATCCAGTTGGACAACGTAAGT-GCAGGCG-----------ATCGG---------------------------------------GAATGGAGGGGACTGAAAGA-----------------------------------------------CAGA-------A-------GCTG---TTGCCACAAGTTTTCCCCAG-------CAC----------------------------------------CC------------------CGCCT--TTC--AG----------------------------------------------------------------------------------------------------------------------------------------ACCCC----CCAACTAATCAAGTTTTTGATGTTCTACTTGGCCTGCCAATGTCT--------------------------GA----------------------------------------GGTAGCCAGTACCTCCAATAGCCA--CCCACGGGC-CAG---C---------GAC-CATGGGCCATGGCGTCACAGACACAGSizeHit CountTotal NormTotal
No Reads
dp5
CTTAAAT---------A--A-AACTT---AACATAG--TGCAAGAA-AATGTATCCAGTCGGTCAACGTAAGT-CGAGGCG-----------ATCGC---------------------------------------CAAAGCAAAATAATCAAAGAC----TTGATACCCAGACTA-----------------------------AAAA----TT-------G-TG---CTGCCATCGCTCCCCCC----------------------------------------------------------------------------------TGA--------------------------------------------------------------------------------------------------------------CAGTACTTACAATAT----ATACCATACA-GCA----CCCACTAATCAAGTTTTTGATGTTCTACGACCACTCCAA------------------------------------------------------------------------------------AACTT----------CTACACAAGG---------------------------------------------CGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................GCAAGAA-AATGTATCCAGTCGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................................TT-------G-TG---CTGCCATCGCTCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
CTTAAAT---------A--A-AACTT---AACATAG--TGCAAGAA-AATGTATCCAGTCGGTCAACGTAAGT-CGAGGCG-----------ATCGC---------------------------------------CAAAGCAAAATAATCAAAGAC----TCGATACCCAGACTA-----------------------------AAAA----TT-------G-TG---CTGCCATCGCTCCCCCC----------------------------------------------------------------------------------TGA--------------------------------------------------------------------------------------------------------------CAGTACTTACAATATACATATACCATACA-GCA----CCCACTAATCAAGTTTTTGATGTTCTACGACCACTCCAA------------------------------------------------------------------------------------AACTT----------CTACACAAGG---------------------------------------------CGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................AATGTATCCAGTCGGTCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
...........................................................CGGTCAACGTAAGT-CGAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
..................................................GTATCCAGTCGGTCAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
................................................................................................................................................................................................................................TG---CTGCCATCGCTCCCCCC----------------------------------------------------------------------------------TGA--------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................2211.001010000
.............................AACATAG--TGCAAGAA-AATGTATCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droWil2
CTCTAAC---------T--AAATCAA---ATCAAAGAAAGAAAGAA-AATGTATCCAGTTGGACAACGTAAGT-GTAGACA-----------AGTAA------AAGGA-------AG-TTAAGTGAAGA---------------------------AGAAGATC--ATATAGAACAAGACA----------------------CCAATA----CC-------AATA---CCAATACA---TTGCCACAT----------AAAC--------------------------------C-ACTCACCCTCCCGTGC--CTCCCACCT--TTA--GAAGACCAAATCGTAAGATAAAACACGACTATTAACGAGTAATTTTTCTGTACTTGCTGCTCGATTTGATGTTGGGGGGATTGTTGCAGAAATGCATCACCCACACCCATACATACACACAAC-------------------------------------------------------------------------------------------------------------------------------------------------CTAAATG----------ACA-------------------------------------TAGAACCCAGAACCCAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................A-AATGTATCCAGTTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00330000
......................................................................................................................................................................ATATAGAACAAGACA----------------------CCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..CTAAC---------T--AAATCAA---ATCAAAGAAAGAAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
...............................................AATGTATCCAGTTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCGATTTGATGT..............................................................................................................................................................................................................................................................................1811.00100010
.....................................AAGAAAGAA-AATGTATCCAGTTGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000
................................AAAGAAAGAAAGAA-AATGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.25100010
droVir3
CTTAAAC---------A--AATAC---------TAG--TGCAAA----ATGTATCCAGTTGGACAACGTAAGT-GG---CG-----------ATTGC-----------------A--ATTGAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................A--AATAC---------TAG--TGCAAA----ATGTATCCAGTTGGACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3411.001000000000000000000000000000000000000000000000001000000000000000
....................ATAC---------TAG--TGCAAA----ATGTATCCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
CTTAAAC---------A--AATAC---------TAG--TGCAAA----ATGTATCCAGTTGGACAACGTAAGT-GG---CAA----AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAATT--------------------GCAATTG----------C-AAAAA--A---------------------------------------------ACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CTTAAAA---------C--AAATA--------CTAG--TGCAAA----ATGTATCCAGTTGGACAACGTAAGT-GG--ACG-----------ATTGA-----------------A--AATACAA-------------------------------------------------------------------CAAGAACTATAACA-AAACAGGCCACAACAAATCT---CTGCCACATGTTACACACACA--C--ACACACA-CACACTCACACACAAAACCCATTCAGACATACCCC-CT---------TCCAACT---CCCCTCTTC----------------------------------------------------------------------------------------------------------------------------------------------------------AGTACAGCTCTTTGATGTTCTACTTTTGCAAATG---CA-------------------AAC-----------------------------------------------------GT-AAACAC----------ACACACAGGC---------------------------------------------ACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AAACAC----------ACACACAGGC---------------------------------------------A.1830.33110

Generated: 05/19/2015 at 12:49 PM