ID:

dsi_6069

Coordinate:

3l:8297442-8297591 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

Antisense to exon [3l_8297217_8297408_-]; Antisense to five_prime_UTR [3l_8297365_8297408_-]; five_prime_UTR [3l_8297592_8297609_+]; CDS [3l_8297610_8297686_+]; exon [3l_8297592_8297686_+]; intron [3l_8295605_8297591_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TAAAATATGTAAACAAATGGAAGCTAGCGAATGAGTATGACCGTTGCTCCGTGTGAGAAATATACTGGCACAAGAGCATGCTGGCTAAGCCCTCTATTCACCACACCTTGGGTGGTGTGGTGGGATCGGGGTATTCAAAATAAACACCCCACCGACTGGCGGCATTTATTGATTTATTTATTGATTTTATCGTTGTACAGGAGCTGCCGGCCGCAGAGATGGCCGCCGAAAACTATCACCTCAAGTGGGA ************************************************((((.((.......)).)))).((((...(((.....))).)))).(((((((((((......)))))))))))...(((((.............))))).....((((((((....((((((......))))))......))))).)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR553485 Chicharo_3 day-old ovaries
...................................................................................................................................................................................ATTGATTTTATCGTTGTACAGGAGCT.............................................	26	0	1	1.00	1	1	0	0	0	0	0
..............................ATGAGTATGACCGTTGCT..........................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................TTTTATCGTTGTACAGGAGC..............................................	20	0	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................ATGGCCGTCGAAGACTA...............	17	2	4	0.50	2	0	0	2	0	0	0
.............................................................................................................................................................................................................GCCGGTCGCAGAGAT..............................	15	1	3	0.33	1	0	0	0	1	0	0
................................................................................................................TGGTGTGAGGGGATCGGG........................................................................................................................	18	2	5	0.20	1	0	0	1	0	0	0
............................................................................................................................ATCGGGGTGTTCAAAACAGA..........................................................................................................	20	3	6	0.17	1	0	0	0	0	1	0
...............................TGAGTATGAGCGTAGCT..........................................................................................................................................................................................................	17	2	10	0.10	1	0	0	0	1	0	0
............................................................................................................TGGGTTGTGTGGTGGGGGCGG.........................................................................................................................	21	3	10	0.10	1	0	1	0	0	0	0
........................................................................................................................................................................TTGATTTATTTAGTGA..................................................................	16	1	14	0.07	1	0	0	0	0	0	1

Anti-sense strand reads

#################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATTTTATACATTTGTTTACCTTCGATCGCTTACTCATACTGGCAACGAGGCACACTCTTTATATGACCGTGTTCTCGTACGACCGATTCGGGAGATAAGTGGTGTGGAACCCACCACACCACCCTAGCCCCATAAGTTTTATTTGTGGGGTGGCTGACCGCCGTAAATAACTAAATAAATAACTAAAATAGCAACATGTCCTCGACGGCCGGCGTCTCTACCGGCGGCTTTTGATAGTGGAGTTCACCCT ************************************************((((.((.......)).)))).((((...(((.....))).)))).(((((((((((......)))))))))))...(((((.............))))).....((((((((....((((((......))))))......))))).)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR902009 testis	SRR618934 dsim w501 ovaries
.................................................................................................................................................TGGGGTGGCTGATCG..........................................................................................	15	1	1	1.00	1	1	0	0	0	0	0	0
...............TTACCTTCGATCGCTTAC.........................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................CTGCTTTTGAGAGTGTAGTTC.....	21	3	2	0.50	1	0	0	1	0	0	0	0
ATTTTATATATTTGTTTAGCTTCGC.................................................................................................................................................................................................................................	25	3	4	0.25	1	0	0	0	1	0	0	0
..........................................................................................................................ACTAGCCCCCTAAGTTTT..............................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................TGTCCCCGCCGGCCGGCGCC..................................	20	3	6	0.17	1	0	0	0	0	1	0	0
......................................................................................TTTGGTAGATAAGTGGTATG................................................................................................................................................	20	3	14	0.07	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................CGACGGCCGGCCTCTAAACC............................	20	3	17	0.06	1	0	0	0	0	1	0	0
..................................................................................................................................................AGGGTGGCTGGCCGCCG.......................................................................................	17	2	18	0.06	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 10:48 AM