ID:

dsi_6057

 Coordinate:

3l:16205495-16205839 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-52.9 -52.9 -52.8

Flybase annnotation

five_prime_UTR [3l_16205709_16205788_-]; CDS [3l_16204951_16205708_-]; exon [3l_16204951_16205788_-]

No Repeatable elements found

Sense Strand Reads

-----------------------------------------------------------------------------------------------------########################################################################################################################################################################################################################################################################################################################################################
TAAATCTCCCATCCCCAACACATTCTTAAAGGTAACCTTTTACGGTATATTCAAAACTTTTTGGTATATTTCGATGCCCTACAAAAGTTTTGGTATTTTACACACTGGTCTCCTAGTCGCGGCTGATAAGTCGCAAGTTTTTGCATAATATTAAGTATAAGTCAAAACAAAGGTGCGAATTATGTCATGTATTCGACTAGCGTCTGCAACCGTCCTGGCAGGCATCCGACCACCGCCGGCAGCAAGCGGAGGCGGCGCCTTGCGCCTGTTGACCCGTAAACAGAGTCCGGATTCTGCATTTGCACGCCGCCAGTTTGCAGTGGCGGTGGAAAACGGCGGGGGCAGGAAGAAGCCAAATGGAACTTTCAAGCTCGCAATTTTGGGGGCCACCGTAGGCGCGGCCACCGGATCGGTGTACACGATGTACCAGCGGTGGACAGACGGC
**********************************************************************************************************((.((((((((((..(((((((..(((((..((((((.......(((....))).......)))))))))))....))))).))...))))))).((((((..........))))))..(((........)))(((((.((((((((...))))).))).)))))...........))).)).....******************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................................................................................................................................................................AGCCAATTGGAACTTTCTTGCT......................................................................... 22 3 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGCAGCGCTGAACAGACGGC 23 3 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................GCCAATTGGAACTTTCTTGCT......................................................................... 21 3 5 1.20 6 3 0 0 0 3 0 0 0 0 0 0 0
..........................................................................................................GGTCTCCTAGTCGCGGCT................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GTAAACAGAGTCCGGATT........................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GTATTCGACTAGCGTCTGCAACC.......................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TAATATTAAGTATAAGTCAAAACAAAGG................................................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................TTTGCATAATATTAAGTATAA............................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................TATGTCATGTATTCGACTAGCGTCTGCC............................................................................................................................................................................................................................................. 28 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................................GTAGGCGCGGCCACCGGATCGGGGTA............................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................CGGTGGAAAACGGCGGGGGTATAA.................................................................................................. 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................TCTCCTAGTCGCGGCTGATAAGTCGCA...................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................ACTCCTAGTCGCGGCTGATAAGTC......................................................................................................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CGTAAACAGAGTCCGGAT......................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TCCGGATTCTGCATTTGCACGCCG........................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................CGTAAACAGAGTCCGGAC......................................................................................................................................................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AACCGTCCTGGCAGGCATCCGACCAC.................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................TTTACACACTGGTCTCCTAGTCGCGGCT................................................................................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTCGACTAGCGTCTGCAACCGTCCTGGC.................................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................CTGGTCTCCTAGTCGCGGCT................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................AACAAGCCAAATGGAACT................................................................................. 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................AGCCAATTGGAACTTTCTTGC.......................................................................... 21 3 5 0.40 2 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TACAGGATGTAGCTGCGGTG.......... 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................GCCAATTGGAACTTTCTTGC.......................................................................... 20 3 16 0.19 3 0 0 0 0 3 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................AAACGACCGGGGCGGGAAGA............................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................................................CAACAAGCCAAATGGAACT................................................................................. 19 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................ATGGGGCCACCGTTGGCGCG............................................. 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TGGTAAACGGCGGGG........................................................................................................ 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................GAGGCATCCGACCACGG.................................................................................................................................................................................................................. 17 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................TACGGTAGATTCAAAAC.................................................................................................................................................................................................................................................................................................................................................................................................... 17 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTACCAGCGGTGGT........ 17 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................TAAAGTATAAGTCAAA....................................................................................................................................................................................................................................................................................... 16 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................................................................................................................CCAATTGGAACTTTCTTGCT......................................................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................AGTGGCTGTGGAAAAC............................................................................................................... 16 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CAAGCCAAATGGAACT................................................................................. 16 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................ATGGAACTTTCAAGA.......................................................................... 15 1 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................TCCTATTCGGGGCTGATC............................................................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................CAAATGGAACTTTGAAGAC......................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................CGCACTGGTCTCCAAG......................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GTCGCAAGTCTTCGCA............................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATTTAGAGGGTAGGGGTTGTGTAAGAATTTCCATTGGAAAATGCCATATAAGTTTTGAAAAACCATATAAAGCTACGGGATGTTTTCAAAACCATAAAATGTGTGACCAGAGGATCAGCGCCGACTATTCAGCGTTCAAAAACGTATTATAATTCATATTCAGTTTTGTTTCCACGCTTAATACAGTACATAAGCTGATCGCAGACGTTGGCAGGACCGTCCGTAGGCTGGTGGCGGCCGTCGTTCGCCTCCGCCGCGGAACGCGGACAACTGGGCATTTGTCTCAGGCCTAAGACGTAAACGTGCGGCGGTCAAACGTCACCGCCACCTTTTGCCGCCCCCGTCCTTCTTCGGTTTACCTTGAAAGTTCGAGCGTTAAAACCCCCGGTGGCATCCGCGCCGGTGGCCTAGCCACATGTGCTACATGGTCGCCACCTGTCTGCCG
********************************************************************************************************************************************************((.((((((((((..(((((((..(((((..((((((.......(((....))).......)))))))))))....))))).))...))))))).((((((..........))))))..(((........)))(((((.((((((((...))))).))).)))))...........))).)).....********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
.....................................................................................................................................................................................................................GGCCCGTCCGTAGTCTGG...................................................................................................................................................................................................................... 18 2 3 0.67 2 2 0 0 0 0
..........................................................................................................................................................................................................AGAAGTTGGCAGGAC.................................................................................................................................................................................................................................... 15 1 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................TTCAGGCCTAAGACGTAAA................................................................................................................................................ 19 1 2 0.50 1 0 0 0 1 0
..............................................................................................................................................................................................................................GTAGGCTGGTGGGGCCCGT............................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGCCGGTGGCATAGCCA............................... 21 3 3 0.33 1 0 1 0 0 0
.......................................................................................................TGACCAGAGGATCAT....................................................................................................................................................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 0 1
...........................................................................................................................................................................CCACGCTTAAGACAG................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0
.........................................................................................................................................................................................................CAGAAGCTGGCAGGAC.................................................................................................................................................................................................................................... 16 2 14 0.14 2 2 0 0 0 0
.................................................................................................................................................................................................................................GGCTGGTGGCGACCATCG.......................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 1
..........................................................................................................GAAGAGGATCAGCGCCG.................................................................................................................................................................................................................................................................................................................................. 17 2 9 0.11 1 1 0 0 0 0
...........................................................................................................................................................................CCACGCTTAATACAC................................................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................ACCTTGAGAGTTCGCGC....................................................................... 17 2 13 0.08 1 1 0 0 0 0
.........................................................................................................................................................................................GTACATAAGCTGGCC..................................................................................................................................................................................................................................................... 15 2 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................CAAATGTTGGCAGGAC.................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0
.............................................ATATAAGTTATGAAAA................................................................................................................................................................................................................................................................................................................................................................................................ 16 1 20 0.05 1 0 1 0 0 0
................TAGAGGAAGAATTTCCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATATGTACTACA.................... 16 2 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 02:56 AM