ID:

dsi_6033

Coordinate:

3r:4162787-4162913 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4162649_4162786_+]; CDS [3r_4162649_4162786_+]; CDS [3r_4162914_4163051_+]; exon [3r_4162914_4163051_+]; intron [3r_4162787_4162913_+]

Repeatable elements

Name	Class	Family	Strand
(TTCC)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------################################################## CCTGTTGAGCTTCCAGGCCTGTCCCGATGTCCAGGGCACCGAGAGTACGGGTAAGTACCGCCTCCTCCGCAGGCGCCAATGACTCATCGCCTTTCTGTGCCCGGCTGGAGCTCAAGACGAACGTCCTTCCTTCCTTCCTTCTTGCTTCCTTTCTTTTCGGTGCTGGTGCTCCTGCAGTCGAGGAGCTGACTTGCCTGGCAACCTGGAAGGACGGCAACTCACGCTAC ************************************************...(((((((.((((.(((..(((((....................))))))))..))))..(((((.(((.............)))..))))).............)))))))..(((....))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR1275483 Male prepupae	M023 head	M025 embryo	SRR902009 testis	M024 male body	SRR553488 RT_0-2 hours eggs	SRR1275487 Male larvae	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
...........................................................................................................................................................................CTACAGTCGACGATCTGAC.....................................	19	3	7	3.14	22	21	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................AACCTGGAAGGACGGCAACTCACGC...	25	0	1	2.00	2	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................GTCGAGGAGCTGACTTGCCT...............................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................TCGGTGCTGGGGCTCCTGCAG..................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GTACGGTCGAGGAGCTGACTTGC.................................	23	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................ACCTGGAAGGACGGCAACTCACGCT..	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................GTCGAGGGGCTGACTTGCCC...............................	20	2	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................GTACGGTCGAGGAGCTGACTT...................................	21	3	3	0.33	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................CTGCAGTCGAGGATCT........................................	16	1	7	0.29	2	0	0	0	0	0	2	0	0	0	0
..............................................ACGGGTGAGTAACGCCT....................................................................................................................................................................	17	2	7	0.14	1	0	0	0	0	0	0	0	1	0	0
................................................GGGTAAGAACCGCATCC..................................................................................................................................................................	17	2	12	0.08	1	0	0	0	0	0	0	0	0	1	0
.........CTTCCAAGGCTGTCCC..........................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................CTTCGTTCCTTCTTG...................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

GGACAACTCGAAGGTCCGGACAGGGCTACAGGTCCCGTGGCTCTCATGCCCATTCATGGCGGAGGAGGCGTCCGCGGTTACTGAGTAGCGGAAAGACACGGGCCGACCTCGAGTTCTGCTTGCAGGAAGGAAGGAAGGAAGAACGAAGGAAAGAAAAGCCACGACCACGAGGACGTCAGCTCCTCGACTGAACGGACCGTTGGACCTTCCTGCCGTTGAGTGCGATG ************************************************...(((((((.((((.(((..(((((....................))))))))..))))..(((((.(((.............)))..))))).............)))))))..(((....))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
........................................................TGGCGGCGGAGGCGTCCG.........................................................................................................................................................	18	1	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................TCACCCTTCCTGCCGTTGAGT......	21	3	1	1.00	1	0	1	0	0
..............................................................................................................GAGTTGTGGTTGCAGGAAGGAC...............................................................................................	22	3	2	0.50	1	0	0	1	0
...................................................................................................................................................................................................ACCGCTGGACCTTCC.................	15	1	7	0.29	2	0	0	0	2
......................................................................................................................................................................................................GTTGGACCATCATGCCG............	17	2	6	0.17	1	1	0	0	0
..................................................................................................................................................AGGAAAGACAAGCAACGACTA............................................................	21	3	8	0.13	1	0	0	1	0
.........................................................GCCGGAGGAGGCGACCGC........................................................................................................................................................	18	2	20	0.05	1	1	0	0	0
...........................................................................................................................................................................................................AGATTCCTGCCGTTGA........	16	2	20	0.05	1	1	0	0	0

Generated: 04/23/2015 at 09:28 PM