ID:

dsi_6027

 Coordinate:

2r:5282943-5283223 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AATTAAATGCAAAAAGAGGGGCAAGGAACTAAGAAAGTAAATTAAATTAGGTGTGTACGGCTGAGGCTTTCTTGTCATTAGCGAAAATTTGAAATTTTCAAAGTGTCAAAGCGCGACGGAAATGCCGTTATATTCGCTACATTTCCCAACATAATTTACCGCGCCCCAAAAAAGAAGAAAGTCGCCGGAACAATCTAACAATTTTCACCAACGAAATTGTTTTATTTTGGTTCTGGGAAGAATTCTTCGCTCTTAATTAATCATCAAGATTATTAGCGTAATGATTTTTTGTTTCTGGCAACTATGAGCAAATAAGTTATTATTATTTTAGGTGCTTTCGGCATTCCGATGGCTAATGCTGGATTTACGCATTGATGAGCA
**************************************************.........((((((((......))).)))))((...((((((...))))))...))...(((((..(((((((.((.......))...))))))).............))))).........((((((..((.((((((((((..(((((((((.......)))))))))..)))...)))))))))....))))))(((..(((((.........)))))..)))(((((((((((((((((.(((...))).))))))).))))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................................................................AATTTACCGCGACCTAAAAGA................................................................................................................................................................................................................ 21 3 1 22.00 22 22 0 0 0 0 0
..........................................................................................................................................................TTTACCGCGACCTAAAAGA................................................................................................................................................................................................................ 19 3 13 2.85 37 37 0 0 0 0 0
........................................................................................................................................................AATTTACCGCGACCTAAAA.................................................................................................................................................................................................................. 19 2 4 2.75 11 11 0 0 0 0 0
.........................................................................................................................................................ATTTACCGCGACCTAAAAGA................................................................................................................................................................................................................ 20 3 3 2.33 7 7 0 0 0 0 0
..........................................................................................................................................................TTTACCGCGACCTAAAAATGA.............................................................................................................................................................................................................. 21 3 2 2.00 4 4 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................CATTCCGATGGCTAATGCTG.................... 20 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................ATTTACCGCGACCTAAAAGAGA.............................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................AATTTACCGCGACCTAAAAAAA............................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................AATTTACCGCGACCTAAAAG................................................................................................................................................................................................................. 20 3 8 0.50 4 4 0 0 0 0 0
..........................................................................................................................................................TTTACCGCGACCTAAAAAA................................................................................................................................................................................................................ 19 2 3 0.33 1 1 0 0 0 0 0
........................................................................................................................................................AATTTACCGCGACCTAA.................................................................................................................................................................................................................... 17 2 12 0.33 4 4 0 0 0 0 0
........................................................................................................................................................AATTTACCGCGACCTAAA................................................................................................................................................................................................................... 18 2 8 0.25 2 2 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................CGGTGGCTAATACTGGAT................. 18 2 4 0.25 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................GTAATGATTGTTTGCTTC...................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0
.........................................................................................................................................................................GAAAGTAGGAAGTCGCCGGA................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 1 0 0 0
..........................................................................................................................................................TTTACCGCGACCTAAAAAAA............................................................................................................................................................................................................... 20 3 17 0.12 2 2 0 0 0 0 0
........................................................................................................................................................AATTTACCGCGACCTA..................................................................................................................................................................................................................... 16 2 20 0.10 2 2 0 0 0 0 0
...........AAAAGAGGCGCAAGGA.................................................................................................................................................................................................................................................................................................................................................................. 16 1 12 0.08 1 0 0 0 0 0 1
...............................................................................................................................................................................................................................CTTTTGGTTCTGGGAGGAGT.......................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 1 0
........................................................................................................................................................AATTTACCGCGACCTAAATA................................................................................................................................................................................................................. 20 3 13 0.08 1 1 0 0 0 0 0
...........................................................................................................AAAATGCGACGGAAATTCCG.............................................................................................................................................................................................................................................................. 20 3 15 0.07 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AGACTAATAGCGTAAT................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................TTACCGCGACCTAAAAGA................................................................................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TTTTGGTTCAGGGAAAAA........................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

TTAATTTACGTTTTTCTCCCCGTTCCTTGATTCTTTCATTTAATTTAATCCACACATGCCGACTCCGAAAGAACAGTAATCGCTTTTAAACTTTAAAAGTTTCACAGTTTCGCGCTGCCTTTACGGCAATATAAGCGATGTAAAGGGTTGTATTAAATGGCGCGGGGTTTTTTCTTCTTTCAGCGGCCTTGTTAGATTGTTAAAAGTGGTTGCTTTAACAAAATAAAACCAAGACCCTTCTTAAGAAGCGAGAATTAATTAGTAGTTCTAATAATCGCATTACTAAAAAACAAAGACCGTTGATACTCGTTTATTCAATAATAATAAAATCCACGAAAGCCGTAAGGCTACCGATTACGACCTAAATGCGTAACTACTCGT
**************************************************.........((((((((......))).)))))((...((((((...))))))...))...(((((..(((((((.((.......))...))))))).............))))).........((((((..((.((((((((((..(((((((((.......)))))))))..)))...)))))))))....))))))(((..(((((.........)))))..)))(((((((((((((((((.(((...))).))))))).))))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M024
male body
.......AGGTTTTTCTCCCCG....................................................................................................................................................................................................................................................................................................................................................................... 15 1 20 3.60 72 0 54 0 4 14 0 0
........................................................................................................................................................TTAAATGGCGCTGGATTTT.................................................................................................................................................................................................................. 19 2 4 2.50 10 10 0 0 0 0 0 0
........................................................................................................................................................TTAAATGGCGCTGGATTT................................................................................................................................................................................................................... 18 2 8 1.13 9 9 0 0 0 0 0 0
.......................................................................................................................................................ATTAAATGGCGCTGGATTTT.................................................................................................................................................................................................................. 20 2 2 1.00 2 2 0 0 0 0 0 0
........................................................................................................................................................TTAAATGGCGCTGGGTTT................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................ACGGCAATATAAGCGATGTAAAGGGT......................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................TCAGCGGCCTTCTTCGATTGCT.................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................TTAAATGGCGCTGGATT.................................................................................................................................................................................................................... 17 2 12 0.58 7 7 0 0 0 0 0 0
.......AGGTTTTTCTCCCCGTT..................................................................................................................................................................................................................................................................................................................................................................... 17 1 3 0.33 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................TCGACGAAAACCCTAAGGCTAC.............................. 22 3 3 0.33 1 0 0 0 1 0 0 0
.......AGGTTTTTCTCCCCGT...................................................................................................................................................................................................................................................................................................................................................................... 16 1 7 0.29 2 0 2 0 0 0 0 0
..................................................................................................................................................GTTGTATTAAATGGCGTAAGGT..................................................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 1 0
.......................................................................................................................................................ATTAAATGGCGCTGGATT.................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0
..AACCTAGGTTTTTCTCCCCG....................................................................................................................................................................................................................................................................................................................................................................... 20 3 10 0.20 2 0 2 0 0 0 0 0
............................................................................................................................................................................................................AGTGTTTGCTTAAAGAAAATAA........................................................................................................................................................... 22 3 11 0.18 2 0 2 0 0 0 0 0
........GGTTTTTCTCCCCGT...................................................................................................................................................................................................................................................................................................................................................................... 15 1 20 0.15 3 0 1 0 1 1 0 0
.....................................................................................................................................................................................AGCGGCCTGCTTCGATTGTT.................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0 0 0
.......AGGTTTTTCTCCCCGTC..................................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.10 2 0 0 0 0 2 0 0
.....................................................................................................................................................................................................................................CCAGAGCCTTCTTAATAAG..................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 1
.........................................................................................................................................................TAAAGGGCGCGGGGT..................................................................................................................................................................................................................... 15 1 18 0.06 1 0 1 0 0 0 0 0
........................................................................................................................................................TTAAATGGCGCTGGAT..................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................................................AAATGGCGCGGTGTAT................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
...ACCTAGGTTTTTCTCCCCG....................................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/23/2015 at 12:05 PM