ID:

dsi_5999

 Coordinate:

3l:15257266-15257560 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.5 -2.9 -2.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AATCGACATTTTACACGTGAGCTGCCTTGGATTTGCCCTTATGCACTTCACGTGTAATCGAGAATTAGCTGGGCAAATATGCGAAGATTTTACAGCCTCGCAAGTGGCAGAGATTAAACGAAACGGAGCAGAGCTCCGGAGTAATGACAAATGTTTTCCCTCATTTCCACTTGGCAAATCAATAAAACTGAATTTCATACAGATAGATAGCCGAAGGATACACAGTATATGCATATGTTTATTGCTAAGATAAATTCCCCAGCAGCAAAACAGTAAACAGCAGAGATATATATGAAAAAAAGGAGAGCTTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGCCTGTATCTGTGAGATACAGATACCATTTTTTCAACCC
***********************************************************************************************************************************************************************************************************************************************************************************************..........................(((..((((.......)))))))...******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
.......................................................................................................................................................................................................................................................................................................................................................AGCAATGAGAGCGGCCTGTAT............................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................AGCAATGAGAGCGGCCTGTATC.............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................ATATATGAAAAAAAGGAGAGC....................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................CGATCAATATTTGTGCAACA........................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................TAAAGGAAACGGAGCAGCGCT.................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................TGGCAGAGACTAAACGAAAGGCA............................................................................................................................................................................................................................................................................ 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................AGCTGGGCAAATATGCGAAG..................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................ATGACAAATGTTTTCCCT.......................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................TGTTCTCCATCTTTTCCACTTGG............................................................................................................................................................................................................................. 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................AAAGACCAGAGAGATATATGA.................................................................................................... 21 3 6 0.33 2 0 0 0 0 0 2 0 0 0
......................................................................................................................................................................................................ACAGAAAGATAGCCGA..................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................TTTATTGCTAAGATCAA............................................................................................................................................. 17 1 4 0.25 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................AAAGACCAGAGAGATATATGAAA.................................................................................................. 23 3 4 0.25 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................AAAGACCAGAGAGATATATGAA................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................................................CAGCAATGTGATCGGCCGGT................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................AGCAGAGCTCCGGGGGA............................................................................................................................................................................................................................................................ 17 2 15 0.07 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................CCGGAGTAATGATTAAT................................................................................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 1 0 0 0 0 0
..............TCGTGAACTGCCTTGG............................................................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TTAGCTGTAAAATGTGCACTCGACGGAACCTAAACGGGAATACGTGAAGTGCACATTAGCTCTTAATCGACCCGTTTATACGCTTCTAAAATGTCGGAGCGTTCACCGTCTCTAATTTGCTTTGCCTCGTCTCGAGGCCTCATTACTGTTTACAAAAGGGAGTAAAGGTGAACCGTTTAGTTATTTTGACTTAAAGTATGTCTATCTATCGGCTTCCTATGTGTCATATACGTATACAAATAACGATTCTATTTAAGGGGTCGTCGTTTTGTCATTTGTCGTCTCTATATATACTTTTTTTCCTCTCGAAATTACGGTTGCTAGTTATAAACACGTTGTTTAGTCGTTACTCTCGCCGGACATAGACACTCTATGTCTATGGTAAAAAAGTTGGG
********************************************************..........................(((..((((.......)))))))...*********************************************************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR902009
testis
 M053
female body
 M023
head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
................................................................................................................................................................................................AAAGTATGTCGATCTATCGGTTTCT.................................................................................................................................................................................. 25 3 2 1.50 3 0 0 2 1 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTCTATCTATCGGTTTCT.................................................................................................................................................................................. 23 2 2 1.50 3 1 0 0 1 1 0 0 0 0 0
..................................................................................................................................................................................................ATTATGTCGATCTATCGGATTCC.................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTATGTCTATCCATCGGATTCC.................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GAAATTACGGTTGCTAGTTATAA................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................AAAGTATGTCTATCTATTGGTTTCT.................................................................................................................................................................................. 25 3 2 1.00 2 0 0 0 0 0 1 0 0 1 0
...................................................................................................................................................................................................GTATGTCGATCTTTCGGGTTCC.................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTCTATCTATTGGTTTCC.................................................................................................................................................................................. 23 2 2 1.00 2 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................GTATGTCTATCTATTGGTTTCC.................................................................................................................................................................................. 22 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................TACGGAAGCTAGTTATAAA................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTCTATCTATCGGTTTCA.................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTCTATCTATCGGTTTCT.................................................................................................................................................................................. 22 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................ATTACGGAAGCTAGTTATAA................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TCAGTTGTCGTCTCTCTA.......................................................................................................... 18 2 4 0.75 3 0 0 0 3 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AAATTACGGAAGCTAGTTA.................................................................... 19 2 5 0.60 3 0 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTCTATCTATTGGCTTCT.................................................................................................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTCGATCTATCGGTTTCC.................................................................................................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTCGATCTATCGGTTTCC.................................................................................................................................................................................. 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTCTATCTATTGGTTTGC.................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTCTATCTATGGGTTT.................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAGTATGTCTATCTATTGGTTTT................................................................................................................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTCGATCTATTGGCTTCC.................................................................................................................................................................................. 23 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................AAAGTATGTCGATCTATTGGCTTCT.................................................................................................................................................................................. 25 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................AGTATGTCAATCTATCGGTTTCG.................................................................................................................................................................................. 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGTCGATCTATAGGCTTC................................................................................................................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTCTATCTTTCGGTTTCC.................................................................................................................................................................................. 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATCTCGATCTATCGGTTTCC.................................................................................................................................................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTCTATCTATTGATTTCC.................................................................................................................................................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTATGTCTATCTATTGTTTTCC.................................................................................................................................................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATTATGTCTATCTATCGGTTTCT.................................................................................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTCTATCTATTTGCTTCT.................................................................................................................................................................................. 23 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGTATGTCGATCTCTCGGTTTCC.................................................................................................................................................................................. 23 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTATGTCTATCTATCGGTTTCT.................................................................................................................................................................................. 22 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGTCTGACTATCGGTTTCCTA................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................ATTACGGTTGCTAGTAATT.................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................CGGAGCGTTCGCCGTC............................................................................................................................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................AAGTATGTCCATCTATTG........................................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................AAAACCTTGTTTAGTCGTTAGT............................................ 22 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................GTATGTCTATCTATCAGTTTCT.................................................................................................................................................................................. 22 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TCCTCTCGAAAGTAC................................................................................ 15 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................TTAAGGGGTTGTAGTTTTG............................................................................................................................ 19 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0
........AAAATGAGCACTTGACG.................................................................................................................................................................................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................CTCTAAGTTGCTGTGCAT............................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......GAAAAATGAGCACTTGACG.................................................................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................AGGGTGTCGTTGTTTTGTC.......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................ACATAGATACGCTATGTC.................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:15257216-15257610 - dsi_5999 AA-------TCGACATTTTACACGTGA-GCTGCCTTGGATTTG---------------------------------------C--CCTTATGCACTTCACGTGTAATCGAGAATTAGCTGGGCAAATATGCGA-AGAT--TTTA------CAGCCTCGCAAGTGGC---AGA----GATTAAACGAAACGGAGCAGAG-------CTCCGGAGTAATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAA-TTTCATACAGATA--GA---------------------------------------------------------------------TAGCCGAAGGATACA------------------------------------------CAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------AGCAGCAAA---ACAGTAAACAGC-------AGA-------------------------GATATATAT----------------------------GA--AAAAAAGGAGAGCTTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGTGAGATA--C-AGATACCATTTTT---TCAAC-----------------------C---C
droSec2 scaffold_0:7738450-7738844 - AA-------TCGACATTTTACACGTGA-GCTGCCTTGGATTTG---------------------------------------C--CCTTATGCACTTCACGTGTAATCGAGAATTAGCTGGGCAAATATGCGA-AGAT--TTTA------CAGCCTCGCAAGTGGC---AGA----GATTAAACGAAACGGAGCAGAG-------CTCCGCAGTAATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAA-TTTCATACAGATA--GA---------------------------------------------------------------------TAGCCGAAGGATATA------------------------------------------CAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------AGCAGCAAA---ACAGTAAACAGC-------AGA-------------------------GATATATAT----------------------------GA--AAAAAAGGAGAGCTTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGTGAGATA--C-AGATACCATTTTT---TCAAC-----------------------C---C
dm3 chr3L:15625857-15626251 - AA-------TCGACGTTTTACACGTGA-GCTGCCTTGGATTTG---------------------------------------C--CCTTATGCACTTCACGTGTAATCGAGAATTAGCTGGGCAAATATGCTA-AGAT--TTTA------TAGCCTCGCAAGTGGC---GGA----GATTAAACGAAACGGAGCAGAG-------CTCCGGAGTAATTAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAAATT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGATATA------------------------------------------CAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------AGCAGCAAA---ACAGTAAACAGC-------AGA-------------------------GATATATAT----------------------------GAAAAAAAAAGGAGAGCTTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGTGAGATA--C-AGATACCA--TTT---TCAAC-----------------------C---C
droEre2 scaffold_4784:17883740-17884132 - AA-------TCGACATCTTACACGTGG-GCTGCCTTGGATTTA---------------------------------------G--CCATATGCACTTCACGTGTAATCGAGAATTAGTTGGGCAAATATGCGG-AGCT--TTTA------CAGCCTCCAAAGTGGC---GGA----GATTAAACGAAACGAGGCAGAG-------TTCCAGAGTAATGGC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAA-TT-TATACAGATA--GA---------------------------------------------------------------------TAGCCGAAGGATGTA------------------------------------------GAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GGCAGCAAA---ACAGTAAACAGC-------AAA-------------------------AATAT--------------------------------GAAAAAAAAATCAGAGCTTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGTATCT----------------------ATCTGCGAGATA--C-AGATACAG--TTT---TCAAC-----------------------A----
droYak3 3L:18173993-18174388 - AA-------TCGACATTTTACACGTGG-GCTGCCTTGGATGAG---------------------------------------T--CCATATGCACTTCACGTGTAATTGAGAATTAGCAGGGCAAATATGCGG-AGGT--TTTA------CAGCCTCGAAAGGGGC---GGA----GATTAAACGAAACGGAGCAGAG-------CTCCGGAGTAATGAC----------AAATGT---TTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAA-TT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGATGTA------------------------------------------GAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GCCTGCAAA---ACAGTAAACAGTAAACAGCAGA-------------------------AATATATAT----------------------------G---AAAAAAGGAGAGCCTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGTGAGATA--C-AGATACAA--TTT---TCAAC-----------------------A----
droEug1 scf7180000408844:357983-358382 - AA-------TTGGCAGGTTACACGTGC-ATTGCCTTGGGCTT-----TATGG------------------------------A--CTATATGCACTTCACGTGTAATTGCGAATTAGCCAAGCAAATATGAGG-CGAT--TTTA------CAGCCTCGAAAGTGCC---AGA----GATTAAACGAAACAGAGCAGAGATGTGATCTCT---GGTATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA------------------A-ATTAA-CT-CACACCGACATGGA---------------------------------------------------------------------CAGCCGAAGGAGA---------------------------------------------------TGCATGTGTTT-ATTGCTAAGATAAATTCCCCCA---A----GTCAGCAAA---TCAGCAAACAGT-------AAA-------TA----------------AATATATATAT-------------A------------GTAAGGAGGAGGATAGCTTTAATACCAACGATCAATATTTGTACAACAAATCAGCAATGAGAGCGGG-----CTG-GCA-----------------------------G--------------------------AGCAGCGGC---------ATACTA--TTT---TCAAC-----------------------G----
droBia1 scf7180000302334:758155-758540 + AA-------TTGACAGGCCACACGAGT-GCTGCCTTGGCTTTA---------------------------------------G--CTGTATGCACTTCACGTGTAATCGCGAATTGGCAGGGCAAATACGAG---GGC--TTTG------CAGCCTCAAAAGTGGC---GGA----GATTA-ACGAAACGGAGCAGAG-------CTGCAGAGGCACGAC----------AAATGT--TTTCCCCCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-TT-CACACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGACATAGTA----------------------------TACTATATATAGTATGTGCATACGCTT-ATTGCTAAGATAAATTCCCC----------GCCAGCAAA---ACAGCAAAGAGC-------AAA-------------------------AATATAA------------------------------GG--GAAACAGGAGGGC-TTAATGCCAACGACCAATATTTGAACAACAAATCAGCAATGAGAGCCGC----------------------------------------------------------------------------GATA--C-AGATACAA--TTT---TCAAC-----------------------A----
droTak1 scf7180000415268:21406-21793 - AA-------TTGGCAGGTTGCACGTGT-GTTGCCTTGGATTCA---------------------------------------G--CTATATGCACTTCTCGTGTAATCGAGAATTAGCATGGCAAATATGGGG-AGAT--TTTA------CAGCCTCGAAAGTGGC---GGA----GATTAAACGAAACAGAGCACAG-------CTCCAGAGGCATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-TT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATATAGTA----------------------------T---ATGTATAGTATGTGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GCGAGCAAA---ACAGCAAACAGT-------AAA-------------------------AATATATGG----------------------------G---AAAAAAGGAGAGC-TTAATGCCAACGATCAATATTTGAACAACAAATCAGCAATGAGAGCGAC----------------------------------------------------------------------------GATA--C-AGATACAA--TTT---TCAGA-----------------------A---A
droEle1 scf7180000491000:1041486-1041876 - GA-------TCGGCAGTGCACACGAGT-ACTGTGTTGCCTTCA---------------------------------------G--CAATATGCACTTCACGTGTAATCGCGAATTAGCCGGGCAAATATGAGG-AGAT--TTTA------CAGCCTCGAAAATGGCT--AGA----GATTAAACGAAACAGAGCAGAG-------CTTCAGAGGCATGAC----------AAATTT--GCTCCCCCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------ATGAA-CT-CATACAGATATGGA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------TAGTATGTGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GGCAGCAAA---TCAGCAAACAGC-------AAA-------------------------AA------------------------------------A--AAAAAAGGAGAGCTTTAATACCAACGATCAATATTTGAACAACAAATCAGCAATGAGAGCGGACTGGCC---------------------------------TGT--------------------------ATCTGCGAGATA--CTACATACTA--TTT---TCAAC-----------------------A----
droRho1 scf7180000778197:3719-4105 + AAATGAGGGTCGGCAGGGCACACGAGT-ACTGCCTTC-----T---------------------------------------G--CTATATGCACTTCACGTGTAATCGCGAATTAGCCCGGCAAATATGAGG-AGAT--TTTA------CAGCCTCGAAAGTGGCT--GGA----GATTAAACGAAACAGAGCAGAG-------CTCCAGAGGCATAGC----------AAATTT--GTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------ACGAA-CT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------TACTATGTGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GGCAGCAAA---TCAGCAAACAGT-------AAA-------------------------AATATATAT----------------------------GA--AAAAAAGGAGAGCCTTAATGCCAACGATCAATATTTGAACAGCAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGCGAG---------TTACGA--TTT---TCAAC-----------------------A----
droFic1 scf7180000454065:1685287-1685705 + AA-------TCGACAGGTCACACGTTT-GCTGCCTTGAATTCA---------------------------------------GCTACATATGCACTTCACGTGTAATCGAGAATTAGCCAGGCAAATATGAGG-GGAT--TTTA------CAGCCTCGAAAGTGGC---AGA----GATTAAACGAAACAGAGCAGGG-------CTCCAGAGGCATGAC----------GAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CCGAA-CT-CACACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATG------------------------------------------AAGTATGTGGCCACGTTT-ATTGCTAAGATAAATTCCCC----------GGCAGCAAA---ACAGCAAACAGCGAACAGCAAA-------------------------AATATCTATATGCATGTATGTACTAT-----------GAA-AAAAAAGGAGAGCTTTAATGCCAACGATCAATATTTGAACAACAAATCAGCAATGAGAGCGGC-----C---------------------------------AGT--------------------------ATCTGCGATATATTC-AGCGACTA--TTT---TCAAC-----------------------A----
droKik1 scf7180000302686:1132637-1133069 + AA-TGAGTGTCGTCAGGTCACACGTGGTGCTGCCTTGGAGC-G---------TACATTATATATACTCTATATACACTTCTAT--CTATATGCACTTCACGTGTAATCGAGAATTAGCAGGGCAAACATGCAA-AGAT--TTTA------CAGCCTCGAAAGTGGC---AGA----GATTAAACGAAACAGAGCAGAG-------CC--AG-------------------GAATGT--TTTCCCTTACTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-CT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGA----------------------------------------------------------------TTGCTAAGATAAATTCCCCCCACAA----GACAGCAAA--------AAACAGC-------AAATAAAAAATAAAAAAACCATACAACAAATAT------GAATATAT-----AAAAAAAAAAAGTG---AAAAAAGAAGAGTTTTAATGGCAACGATCAATATTTGAACAACAAATCAGCAATGAGAGCGGC---------------------------------------TGT--------------------------ATCTGCGAG---------ATACAT--TTT---TCTAC-----------------------TGGCC
droAna3 scaffold_13337:11532317-11532680 + ------------------TGCACGTGT-GCTGCCTTGAATT-GCAATTGTGGA-----------------------------GTATTATGTGCACTTCACATGTAATCGGGAATTAGCCAGGCAAATATGATG-AGAT--TTAA------CAGCCTCGAAGGTGGC---AGA----GATTAAACGAAACGGAGCAG----------------------AC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-TT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------C---TTGTGCATACGTTT-ATTGCTCAGATAAATTCCCCCC---TGTGTGGT---AAAAACTCA-TAA----A-------AAA-------------------------AATATATTT----------------------------TT--AAAAAAAGAGTGTTTTTTT-----TAATCAATATTTGAACAACAAATCAGCAATGCGAGCAAG-----C---------------------------------TGT--------------------------ATCTGCGAG---------ATACAC--TTT---TCTAC-----------------------A---A
droBip1 scf7180000396589:2440770-2441130 - ------------------TGCACGTGT-GCTGCCTTGAATT-GCAATTGTAGT-----------------------------ATATTATGTGCACTTCACGTGTAATCGGGAATTAGCCAGGCAAATATGATG-AGAT--TTAA------CAGCCTCGAAGGTGGC---AGA----GATTAAACGAAACGGAGCAG----------------------AC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-TT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------C---TTGTGCATACGTTTTATTGCTCAGATAAATTCCCCCC---AG---GGTGGTAAAAACTCA-TAA------------AAA-------------------------AATATTTAT--------------------------------AAAAAAAGTGTGTTTTTTT------AATCAATATTTGAACAACAAATCAGCAATGCGAGCAGG-----C---------------------------------CGT--------------------------ATCTGCGAG---------ATACAA--TTT---TCTAC-----------------------A---A
dp5 XR_group6:138790-139159 + G-----------ACAGATCGCACGTGC-GCTCCCCTGGCTT----------------------------------------------TTGTGAACCTTAGGTGCCATCGCGAATTAGCGAGGCAAATACACGA-CGAT--ATTG------CTGCCCAG--AGTGGC---AGA----GATTAAGTGAAACAGAGCAAAG-------CGC-AGAGGCATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------ACGAA-TC-CACATACATG--CACACAGGTGCATGTGTACT----------------------TGTAGGTAGATGATATAAA----------TATACGAAGGAGA---------------------------------------------------TGCATACGCTT-TTTGCCCAGAT-------------------------------------------------------------------------------------------------------------------------------------TTAAAGCCAGCGATCAATATTTGAACAACAAATCAGCGGCAATAACAGC-----CGCGG---------------A----------------GTGGGGCTGCGAGCAACAGCAGCGATATCTGGGAG---------C--CAA--CTT---TTAAT---------------------ACA----
droPer2 scaffold_12:823262-823630 + G-----------ACAGATCGCACGTGC-GCTCCCCTGGCTT----------------------------------------------TTGTGAACCTTAGGTGCCATCGCGAATTAGCGAGGCAAATACACGA-CGAT--ATTG------CTGCCCAG--AGTGGC---AGA----GATTAAGTGAAACAGAGCAAAG-------CGC-AGAGGCATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------ACGAA-TC-CACATACATG--CACACAGGTGCATGTGTACT----------------------TGTAGGTAGATGATATAAA----------TATACGAAGGAGA---------------------------------------------------TGCATACGCTT-TTTGCCCAGAT-------------------------------------------------------------------------------------------------------------------------------------TTAAAGCCAGCGATCAATATTTGAACAACAAATCAGCGGCAATAACAGC-----CGCGG---------------A----------------GTGGGGCTGCGAGCAACAGCAGCGATATCTGGGAG---------C--CAA--CTT---TTAAT-----------------------A---C
droWil2 scf2_1100000004540:1722241-1722297 + GA-------TC-------------------TCCTTCAGTT---------------------------------------------TTGTTTGCACTTCACATGTAATCGTAAATGAGGCAAGTAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:22429765-22430229 + ----------------------------------TTGTCCTTA---------------------------------------G--TGA----TTCTTGACGTGTAGCTGACAATTTGAAACTCAAACAGATGA-ACTT--TTTA------TGGCATC--AAGTGGG---AAA----CAGTAAATGAAACAGAGCAAAG-------CACA---AGCACGACCAAAGCTAAGTAACAC--TTCCCTACATTTTTACAGCCT-GAAAAGAAAAAAAAAAAAAACAAATAATATCGACTTGGCAAATAAAATAAAAGCCATATGCCATCAGCTAAAGCAACATC-CAGATAGATA--GA---------------------------------------------------------------------GAGACGAAGCTTG-------------------CGATACGAATATCCCGTGTCCAATACATTATTTAGAAACGTTT-ATTGCTAAGATAAATTCAGT----------A-----------------------------------------------------------------------------------------------------------AGGAGTTTAATAGCCACTATCAATATTTGTACAACAAATAAGCAACGAGAGCGAC-----CGG-GCACAATGCGAGACGGTGTATAATGT----AGT--------------------------ATCTACAAGATA--C-AACCGCAA--TCG-CAGCCACAGCAACAGCAGCAGCAGCAGCAGCAGTC
droMoj3 scaffold_6680:17032396-17032792 + ----------------------------------------------------------------------------------------------CTTGGCATGTAGCTAACAATTGTTAACTCAAACAGAAGAGCACTTTTTTA------TGGCATTGCAGGCAGTAGGAAACGGCAGGTAAATGAAACAGAGCAAGG-------CACG---AGCACGGG----------TAACAC--TTCCATACACTTTTACAGCCC-GAA---------------------CGAAATCAACTTGGCACCTTAA-TAAAA--------------------GC-AGCAC-CATATGGATA--GA---------------------------------------------------------------------GAGATACCG-ATACC----AAGTTCGAGACCGGGCCGCGAATC--ACAAGTCAGATACATCATTTAGAAACGTTT-ATTGCTAAGATAAATTCAGC----------A-----------------------------------------------------------------------------------------------------------AGGAGTTTAATAGCCACTATCAATATTTGTACAACAAATAAGCGACGAGCGCGAC-----CGA-GCTCAATGCGAGGCGGCGTAAAATGT----CGC--------------------------AGCCATAAGATA--G-AGACGAAATCGTAGCAGCAAC-----------------------A----
droGri2 scaffold_15121:130919-131359 + ----------------------------------------------------------------------------------------------CTTGGCATGTAGCTGACAATTGTTAAGTCAAATAGGAGAGAGAT--TTTAATGATGCATTCTCA----TGGG---AGA-GGACCGTAAATGAAACAGAGCAAAG-------CACA---AGCACGACCTAAACTAAGTAACACGATTCTCCATGATTTTATAGCATTGAA-----------------------AAATCAACTTTGCAAATCAA-TAAA---------------------GTCACATA-TATATG------TA--------------TATTTTGTAGACTGTGATTGATGTTTTGTGAGTGAGTGTGGTACAGCTACGGAGAGATACGA--------------------GCCCGAGATATGAATA--CCGAGTCCAATACTTTATTTAGAAACGTTT-ATTGCTAAGATAAATCCACA----------A-----------------------------------------------------------------------------------------------------------AGGAGTTTAATAGCCACTATCAATATTTGTACAACAAATAAGCAACGAGAGCAAC-----CGAGGCACAATGCTAACCGGAGTGCGA-GTACACGGT--------------------------ATCTATAAGATA--C-AGCCGCAA--TCG-CAGCCAC-----------------------A----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AA-------TCGACATTTTACACGTGA-GCTGCCTTGGATTTG---------------------------------------C--CCTTATGCACTTCACGTGTAATCGAGAATTAGCTGGGCAAATATGCGA-AGAT--TTTA------CAGCCTCGCAAGTGGC---AGA----GATTAAACGAAACGGAGCAGAG-------CTCCGGAGTAATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAA-TTTCATACAGATA--GA---------------------------------------------------------------------TAGCCGAAGGATACA------------------------------------------CAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------AGCAGCAAA---ACAGTAAACAGC-------AGA-------------------------GATATATAT----------------------------GA--AAAAAAGGAGAGCTTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGTGAGATA--C-AGATACCATTTTT---TCAAC-----------------------C---CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------AT...............................................................2112.00202000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATC..............................................................2211.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----------------------------GA--AAAAAAGGAGAGC.......................................................................................................................................................................................2111.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCAATATTTGTGCAACA........................................................................................................................................................2011.00100010000000000000
...................................................................................................................AGCTGGGCAAATATGCGA-AG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.......................................................................................................................................................................................................................ATGAC----------AAATGT--TTTCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
droSec2
AA-------TCGACATTTTACACGTGA-GCTGCCTTGGATTTG---------------------------------------C--CCTTATGCACTTCACGTGTAATCGAGAATTAGCTGGGCAAATATGCGA-AGAT--TTTA------CAGCCTCGCAAGTGGC---AGA----GATTAAACGAAACGGAGCAGAG-------CTCCGCAGTAATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAA-TTTCATACAGATA--GA---------------------------------------------------------------------TAGCCGAAGGATATA------------------------------------------CAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------AGCAGCAAA---ACAGTAAACAGC-------AGA-------------------------GATATATAT----------------------------GA--AAAAAAGGAGAGCTTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGTGAGATA--C-AGATACCATTTTT---TCAAC-----------------------C---CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................AATCGAGAATTAGCTGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--AAAAAAGGAGAGCTTTAATG................................................................................................................................................................................2211.0010001
dm3
AA-------TCGACGTTTTACACGTGA-GCTGCCTTGGATTTG---------------------------------------C--CCTTATGCACTTCACGTGTAATCGAGAATTAGCTGGGCAAATATGCTA-AGAT--TTTA------TAGCCTCGCAAGTGGC---GGA----GATTAAACGAAACGGAGCAGAG-------CTCCGGAGTAATTAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAAATT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGATATA------------------------------------------CAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------AGCAGCAAA---ACAGTAAACAGC-------AGA-------------------------GATATATAT----------------------------GAAAAAAAAAGGAGAGCTTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGTGAGATA--C-AGATACCA--TTT---TCAAC-----------------------C---CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................GTGTAATCGAGAATTAGCTGGGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACACGTGA-GCTGCCTTGGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CGTTTTACACGTGA-GCTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................AGCAGAG-------CTCCGGAGTAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATCAATATTTGTGCAACAA.......................................................................................................................................................2411.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AA-------TCGACATCTTACACGTGG-GCTGCCTTGGATTTA---------------------------------------G--CCATATGCACTTCACGTGTAATCGAGAATTAGTTGGGCAAATATGCGG-AGCT--TTTA------CAGCCTCCAAAGTGGC---GGA----GATTAAACGAAACGAGGCAGAG-------TTCCAGAGTAATGGC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAA-TT-TATACAGATA--GA---------------------------------------------------------------------TAGCCGAAGGATGTA------------------------------------------GAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GGCAGCAAA---ACAGTAAACAGC-------AAA-------------------------AATAT--------------------------------GAAAAAAAAATCAGAGCTTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGTATCT----------------------ATCTGCGAGATA--C-AGATACAG--TTT---TCAAC-----------------------A----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGC-------AAA-------------------------AATAT--------------------------------GAAA....................................................................................................................................................................................................1911.0010000010
.................................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------------------------TAGCCGAAGGATGTA------------------------------------------GA.......................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
AA-------TCGACATTTTACACGTGG-GCTGCCTTGGATGAG---------------------------------------T--CCATATGCACTTCACGTGTAATTGAGAATTAGCAGGGCAAATATGCGG-AGGT--TTTA------CAGCCTCGAAAGGGGC---GGA----GATTAAACGAAACGGAGCAGAG-------CTCCGGAGTAATGAC----------AAATGT---TTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA--------------------CTGAA-TT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGATGTA------------------------------------------GAGTATATGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GCCTGCAAA---ACAGTAAACAGTAAACAGCAGA-------------------------AATATATAT----------------------------G---AAAAAAGGAGAGCCTTAATGCCAACGATCAATATTTGTGCAACAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGTGAGATA--C-AGATACAA--TTT---TCAAC-----------------------A----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................AGCAGAG-------CTCCGGAGTAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.50301000020000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGATGTA------------------------------------------GAGTATATGC...............................................................................................................................................................................................................................................................................................................................................2021.00200000020000
............................................................................................................................AATATGCGG-AGGT--TTTA------CAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.00200000020000
..............................................................................................................................................................................................................................................................................................................................................................A--GA---------------------------------------------------------------------CAGCCGAAGGATGTA------------------------------------------GA.......................................................................................................................................................................................................................................................................................................................................................2021.00200000020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCTTAATGCCAACGATCAAT....................................................................................................................................................................2320.50101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAT----------------------------G---AAAAAAGGAGAGC.......................................................................................................................................................................................2120.50100000010000
..............................................................................................................................................................................................................................................................................................................................................................A--GA---------------------------------------------------------------------CAGCCGAAGGATGTA------------------------------------------GAGT.....................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
.....................................GATGAG---------------------------------------T--CCATATGCACTTCACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATA--C-AGATACAA--TTT---TCAA.............................2420.50100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAAGGATGTA------------------------------------------GAGTAT...................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATCAGCAATGAGAGCGGC-----................................................................................................................................2320.50100000010000
.................................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------------------------CAGCCGAAGGATGTA------------------------------------------GAGTAT...................................................................................................................................................................................................................................................................................................................................................2320.50100000010000
................................................................................................................ATTAGCAGGGCAAATATGCGG-AGGT--T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AAAAAAGGAGAGCCTTAATGCCAACGAT........................................................................................................................................................................2920.50100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----------------------------G---AAAAAAGGAGAGCCTTAATGCC..............................................................................................................................................................................2920.50100000010000
......................................................................................................GTAATTGAGAATTAGCAGGGCAAATATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.50100000010000
......................................ATGAG---------------------------------------T--CCATATGCACTTCACGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000010000
.........................................................................................................ATTGAGAATTAGCAGGGCAAATATGCGG-A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.50100000010000
.............................................................................................................................................................................................................................................................................................................................................................TA--GA---------------------------------------------------------------------CAGCCGAAGGATGTA------------------------------------------GA.......................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
..............................................................................................................................................................................................GAGCAGAG-------CTCCGGAGTAATGAC----------AAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAACAAATCAGCAATGAGAGCG.......................................................................................................................................2520.50100000010000
...............................................................................................................................................................................................AGCAGAG-------CTCCGGAGTAATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGT...........................................................2220.50110000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----------------------------G---AAAAAAGGAGAGCCT.....................................................................................................................................................................................2220.50100000010000
................................................................................................................................................................................................................................................................................................................................................A-TT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGATGT....................................................................................................................................................................................................................................................................................................................................................................................................2920.50100000010000
...........................................................................................................................................................................................................................................................................................................................................................GATA--GA---------------------------------------------------------------------CAGCCGAAGGATGT....................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
.......................................................................................................................................................................................................................................................................................................................................................TACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----------------------------G---AAAAAAGGAGAGC.......................................................................................................................................................................................2020.50100000010000
...........................................................................................................................................................................................................................................................................................................................................................GATA--GA---------------------------------------------------------------------CAGCCGAAGGATGTA------------------------------------------GAGT.....................................................................................................................................................................................................................................................................................................................................................2520.50100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGGAGAGCCTTAATGCCAAC...........................................................................................................................................................................2420.50100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCT.............................................................2020.50100000010000
droEug1
AA-------TTGGCAGGTTACACGTGC-ATTGCCTTGGGCTT-----TATGG------------------------------A--CTATATGCACTTCACGTGTAATTGCGAATTAGCCAAGCAAATATGAGG-CGAT--TTTA------CAGCCTCGAAAGTGCC---AGA----GATTAAACGAAACAGAGCAGAGATGTGATCTCT---GGTATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAAA------------------A-ATTAA-CT-CACACCGACATGGA---------------------------------------------------------------------CAGCCGAAGGAGA---------------------------------------------------TGCATGTGTTT-ATTGCTAAGATAAATTCCCCCA---A----GTCAGCAAA---TCAGCAAACAGT-------AAA-------TA----------------AATATATATAT-------------A------------GTAAGGAGGAGGATAGCTTTAATACCAACGATCAATATTTGTACAACAAATCAGCAATGAGAGCGGG-----CTG-GCA-----------------------------G--------------------------AGCAGCGGC---------ATACTA--TTT---TCAAC-----------------------G----SizeHit CountTotal NormTotal
No Reads
droBia1
AA-------TTGACAGGCCACACGAGT-GCTGCCTTGGCTTTA---------------------------------------G--CTGTATGCACTTCACGTGTAATCGCGAATTGGCAGGGCAAATACGAG---GGC--TTTG------CAGCCTCAAAAGTGGC---GGA----GATTA-ACGAAACGGAGCAGAG-------CTGCAGAGGCACGAC----------AAATGT--TTTCCCCCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-TT-CACACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGACATAGTA----------------------------TACTATATATAGTATGTGCATACGCTT-ATTGCTAAGATAAATTCCCC----------GCCAGCAAA---ACAGCAAAGAGC-------AAA-------------------------AATATAA------------------------------GG--GAAACAGGAGGGC-TTAATGCCAACGACCAATATTTGAACAACAAATCAGCAATGAGAGCCGC----------------------------------------------------------------------------GATA--C-AGATACAA--TTT---TCAAC-----------------------A----SizeHit CountTotal NormTotal
No Reads
droTak1
AA-------TTGGCAGGTTGCACGTGT-GTTGCCTTGGATTCA---------------------------------------G--CTATATGCACTTCTCGTGTAATCGAGAATTAGCATGGCAAATATGGGG-AGAT--TTTA------CAGCCTCGAAAGTGGC---GGA----GATTAAACGAAACAGAGCACAG-------CTCCAGAGGCATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-TT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATATAGTA----------------------------T---ATGTATAGTATGTGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GCGAGCAAA---ACAGCAAACAGT-------AAA-------------------------AATATATGG----------------------------G---AAAAAAGGAGAGC-TTAATGCCAACGATCAATATTTGAACAACAAATCAGCAATGAGAGCGAC----------------------------------------------------------------------------GATA--C-AGATACAA--TTT---TCAGA-----------------------A---ASizeHit CountTotal NormTotal
No Reads
droEle1
GA-------TCGGCAGTGCACACGAGT-ACTGTGTTGCCTTCA---------------------------------------G--CAATATGCACTTCACGTGTAATCGCGAATTAGCCGGGCAAATATGAGG-AGAT--TTTA------CAGCCTCGAAAATGGCT--AGA----GATTAAACGAAACAGAGCAGAG-------CTTCAGAGGCATGAC----------AAATTT--GCTCCCCCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------ATGAA-CT-CATACAGATATGGA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------TAGTATGTGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GGCAGCAAA---TCAGCAAACAGC-------AAA-------------------------AA------------------------------------A--AAAAAAGGAGAGCTTTAATACCAACGATCAATATTTGAACAACAAATCAGCAATGAGAGCGGACTGGCC---------------------------------TGT--------------------------ATCTGCGAGATA--CTACATACTA--TTT---TCAAC-----------------------A----SizeHit CountTotal NormTotal
No Reads
droRho1
AAATGAGGGTCGGCAGGGCACACGAGT-ACTGCCTTC-----T---------------------------------------G--CTATATGCACTTCACGTGTAATCGCGAATTAGCCCGGCAAATATGAGG-AGAT--TTTA------CAGCCTCGAAAGTGGCT--GGA----GATTAAACGAAACAGAGCAGAG-------CTCCAGAGGCATAGC----------AAATTT--GTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------ACGAA-CT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------TACTATGTGCATATGTTT-ATTGCTAAGATAAATTCCCC----------GGCAGCAAA---TCAGCAAACAGT-------AAA-------------------------AATATATAT----------------------------GA--AAAAAAGGAGAGCCTTAATGCCAACGATCAATATTTGAACAGCAAATCAGCAATGAGAGCGGC-----C---------------------------------TGT--------------------------ATCTGCGAG---------TTACGA--TTT---TCAAC-----------------------A----SizeHit CountTotal NormTotal
No Reads
droFic1
AA-------TCGACAGGTCACACGTTT-GCTGCCTTGAATTCA---------------------------------------GCTACATATGCACTTCACGTGTAATCGAGAATTAGCCAGGCAAATATGAGG-GGAT--TTTA------CAGCCTCGAAAGTGGC---AGA----GATTAAACGAAACAGAGCAGGG-------CTCCAGAGGCATGAC----------GAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CCGAA-CT-CACACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATG------------------------------------------AAGTATGTGGCCACGTTT-ATTGCTAAGATAAATTCCCC----------GGCAGCAAA---ACAGCAAACAGCGAACAGCAAA-------------------------AATATCTATATGCATGTATGTACTAT-----------GAA-AAAAAAGGAGAGCTTTAATGCCAACGATCAATATTTGAACAACAAATCAGCAATGAGAGCGGC-----C---------------------------------AGT--------------------------ATCTGCGATATATTC-AGCGACTA--TTT---TCAAC-----------------------A----SizeHit CountTotal NormTotal
No Reads
droKik1
AA-TGAGTGTCGTCAGGTCACACGTGGTGCTGCCTTGGAGC-G---------TACATTATATATACTCTATATACACTTCTAT--CTATATGCACTTCACGTGTAATCGAGAATTAGCAGGGCAAACATGCAA-AGAT--TTTA------CAGCCTCGAAAGTGGC---AGA----GATTAAACGAAACAGAGCAGAG-------CC--AG-------------------GAATGT--TTTCCCTTACTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-CT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGA----------------------------------------------------------------TTGCTAAGATAAATTCCCCCCACAA----GACAGCAAA--------AAACAGC-------AAATAAAAAATAAAAAAACCATACAACAAATAT------GAATATAT-----AAAAAAAAAAAGTG---AAAAAAGAAGAGTTTTAATGGCAACGATCAATATTTGAACAACAAATCAGCAATGAGAGCGGC---------------------------------------TGT--------------------------ATCTGCGAG---------ATACAT--TTT---TCTAC-----------------------TGGCCSizeHit CountTotal NormTotal
No Reads
droAna3
------------------TGCACGTGT-GCTGCCTTGAATT-GCAATTGTGGA-----------------------------GTATTATGTGCACTTCACATGTAATCGGGAATTAGCCAGGCAAATATGATG-AGAT--TTAA------CAGCCTCGAAGGTGGC---AGA----GATTAAACGAAACGGAGCAG----------------------AC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-TT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------C---TTGTGCATACGTTT-ATTGCTCAGATAAATTCCCCCC---TGTGTGGT---AAAAACTCA-TAA----A-------AAA-------------------------AATATATTT----------------------------TT--AAAAAAAGAGTGTTTTTTT-----TAATCAATATTTGAACAACAAATCAGCAATGCGAGCAAG-----C---------------------------------TGT--------------------------ATCTGCGAG---------ATACAC--TTT---TCTAC-----------------------A---ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................ATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------C---TTGT.................................................................................................................................................................................................................................................................................................................................................2511.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAATGCGAGCAAG-----C---------------------------------TGT--------------------------A................................................................2211.001000100
........................................................................................................................................................................................GAAACGGAGCAG----------------------AC----------AAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------C---TT...................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATGCGAGCAAG-----C---------------------------------TGT--------------------------.................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................ATA--GA---------------------------------------------------------------------CAGCCGAAGGAGAT....................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGTTTTTTT-----TAATCAAT....................................................................................................................................................................2111.001000010
............................................................................................................................................................................................................................................................................................................................................................ATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------C---TTGTGC...............................................................................................................................................................................................................................................................................................................................................2711.001000010
..........................................................................................................................................................................................................................................GT--TTTCCCTCATTT----------------------------------------CCACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................................................................GTGGC---AGA----GATTAAACGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
........................................................................................................................................................................................GAAACGGAGCAG----------------------AC----------AATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.091010000
droBip1
------------------TGCACGTGT-GCTGCCTTGAATT-GCAATTGTAGT-----------------------------ATATTATGTGCACTTCACGTGTAATCGGGAATTAGCCAGGCAAATATGATG-AGAT--TTAA------CAGCCTCGAAGGTGGC---AGA----GATTAAACGAAACGGAGCAG----------------------AC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------CTGAA-TT-CATACAGATA--GA---------------------------------------------------------------------CAGCCGAAGGAGATA------------------------------------------C---TTGTGCATACGTTTTATTGCTCAGATAAATTCCCCCC---AG---GGTGGTAAAAACTCA-TAA------------AAA-------------------------AATATTTAT--------------------------------AAAAAAAGTGTGTTTTTTT------AATCAATATTTGAACAACAAATCAGCAATGCGAGCAGG-----C---------------------------------CGT--------------------------ATCTGCGAG---------ATACAA--TTT---TCTAC-----------------------A---ASizeHit CountTotal NormTotal
No Reads
dp5
G-----------ACAGATCGCACGTGC-GCTCCCCTGGCTT----------------------------------------------TTGTGAACCTTAGGTGCCATCGCGAATTAGCGAGGCAAATACACGA-CGAT--ATTG------CTGCCCAG--AGTGGC---AGA----GATTAAGTGAAACAGAGCAAAG-------CGC-AGAGGCATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------ACGAA-TC-CACATACATG--CACACAGGTGCATGTGTACT----------------------TGTAGGTAGATGATATAAA----------TATACGAAGGAGA---------------------------------------------------TGCATACGCTT-TTTGCCCAGAT-------------------------------------------------------------------------------------------------------------------------------------TTAAAGCCAGCGATCAATATTTGAACAACAAATCAGCGGCAATAACAGC-----CGCGG---------------A----------------GTGGGGCTGCGAGCAACAGCAGCGATATCTGGGAG---------C--CAA--CTT---TTAAT---------------------ACA----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................TTCCCTCATTT----------------------------------------CCACTTGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAATCAGCGGCAAT...........................................................................................................................................1911.0010000001000
.............CAGATCGCACGTGC-GCTCCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
G-----------ACAGATCGCACGTGC-GCTCCCCTGGCTT----------------------------------------------TTGTGAACCTTAGGTGCCATCGCGAATTAGCGAGGCAAATACACGA-CGAT--ATTG------CTGCCCAG--AGTGGC---AGA----GATTAAGTGAAACAGAGCAAAG-------CGC-AGAGGCATGAC----------AAATGT--TTTCCCTCATTT----------------------------------------CCACTTGGCAAATCAA-TAAA---------------------ACGAA-TC-CACATACATG--CACACAGGTGCATGTGTACT----------------------TGTAGGTAGATGATATAAA----------TATACGAAGGAGA---------------------------------------------------TGCATACGCTT-TTTGCCCAGAT-------------------------------------------------------------------------------------------------------------------------------------TTAAAGCCAGCGATCAATATTTGAACAACAAATCAGCGGCAATAACAGC-----CGCGG---------------A----------------GTGGGGCTGCGAGCAACAGCAGCGATATCTGGGAG---------C--CAA--CTT---TTAAT-----------------------A---CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GA-------TC-------------------TCCTTCAGTT---------------------------------------------TTGTTTGCACTTCACATGTAATCGTAAATGAGGCAAGTAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
----------------------------------TTGTCCTTA---------------------------------------G--TGA----TTCTTGACGTGTAGCTGACAATTTGAAACTCAAACAGATGA-ACTT--TTTA------TGGCATC--AAGTGGG---AAA----CAGTAAATGAAACAGAGCAAAG-------CACA---AGCACGACCAAAGCTAAGTAACAC--TTCCCTACATTTTTACAGCCT-GAAAAGAAAAAAAAAAAAAACAAATAATATCGACTTGGCAAATAAAATAAAAGCCATATGCCATCAGCTAAAGCAACATC-CAGATAGATA--GA---------------------------------------------------------------------GAGACGAAGCTTG-------------------CGATACGAATATCCCGTGTCCAATACATTATTTAGAAACGTTT-ATTGCTAAGATAAATTCAGT----------A-----------------------------------------------------------------------------------------------------------AGGAGTTTAATAGCCACTATCAATATTTGTACAACAAATAAGCAACGAGAGCGAC-----CGG-GCACAATGCGAGACGGTGTATAATGT----AGT--------------------------ATCTACAAGATA--C-AACCGCAA--TCG-CAGCCACAGCAACAGCAGCAGCAGCAGCAGCAGTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGATA--C-AACCGCAA--T......................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAACAAATAAGCAACGAGAGC........................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-----CGG-GCACAATGCGAGACGGTGT.........................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGCTTG-------------------CGATACGAATATCCCGT.................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTG-------------------CGATACGAATATCCCGT.................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................T-GAAAAGAAAAAAAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.251001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAG.....21200.153003000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCAACAGCAGCAGCAGCA.........23140.071000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................AAAAGAAAAAAAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGTC21200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
----------------------------------------------------------------------------------------------CTTGGCATGTAGCTAACAATTGTTAACTCAAACAGAAGAGCACTTTTTTA------TGGCATTGCAGGCAGTAGGAAACGGCAGGTAAATGAAACAGAGCAAGG-------CACG---AGCACGGG----------TAACAC--TTCCATACACTTTTACAGCCC-GAA---------------------CGAAATCAACTTGGCACCTTAA-TAAAA--------------------GC-AGCAC-CATATGGATA--GA---------------------------------------------------------------------GAGATACCG-ATACC----AAGTTCGAGACCGGGCCGCGAATC--ACAAGTCAGATACATCATTTAGAAACGTTT-ATTGCTAAGATAAATTCAGC----------A-----------------------------------------------------------------------------------------------------------AGGAGTTTAATAGCCACTATCAATATTTGTACAACAAATAAGCGACGAGCGCGAC-----CGA-GCTCAATGCGAGGCGGCGTAAAATGT----CGC--------------------------AGCCATAAGATA--G-AGACGAAATCGTAGCAGCAAC-----------------------A----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC--------------------------AGCCATAAGATA--G-AGACGAAAT........................................2511.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--G-AGACGAAATCGTAGC..................................1911.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGATA--G-AGACGAAATCGT.....................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAATAGCCACTATCAATATT.................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGATAAATTCAGC----------A-----------------------------------------------------------------------------------------------------------AGGAGT......................................................................................................................................................................................2411.001100000
....................................................................................................................................................................................AAATGAAACAGAGCAAGG-------CACG---A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATGT----CGC--------------------------AGCCATAAGATA--...................................................2411.001100000
..............................................................................................................................CAGAAGAGCACTTTTTTA------TG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
......................................................................................................................................................................................................................................................................................................................................................ATATGGATA--GA---------------------------------------------------------------------GAGATACCG-........................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGAAACGTTT-ATTGCTAAGATA..........................................................................................................................................................................................................................................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTCAGC----------A-----------------------------------------------------------------------------------------------------------AGGAGTTTA...................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................ATCAACTTGGCACCTTAA-TAAAA--------------------GC-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATGT----CGC--------------------------AGCCATAAGAT......................................................2311.001100000
............................................................................................................................................................................................CAGAGCAAGG-------CACG---AGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC--------------------------AGCCATAAGATA--G-AG...............................................1811.001000001
droGri2
----------------------------------------------------------------------------------------------CTTGGCATGTAGCTGACAATTGTTAAGTCAAATAGGAGAGAGAT--TTTAATGATGCATTCTCA----TGGG---AGA-GGACCGTAAATGAAACAGAGCAAAG-------CACA---AGCACGACCTAAACTAAGTAACACGATTCTCCATGATTTTATAGCATTGAA-----------------------AAATCAACTTTGCAAATCAA-TAAA---------------------GTCACATA-TATATG------TA--------------TATTTTGTAGACTGTGATTGATGTTTTGTGAGTGAGTGTGGTACAGCTACGGAGAGATACGA--------------------GCCCGAGATATGAATA--CCGAGTCCAATACTTTATTTAGAAACGTTT-ATTGCTAAGATAAATCCACA----------A-----------------------------------------------------------------------------------------------------------AGGAGTTTAATAGCCACTATCAATATTTGTACAACAAATAAGCAACGAGAGCAAC-----CGAGGCACAATGCTAACCGGAGTGCGA-GTACACGGT--------------------------ATCTATAAGATA--C-AGCCGCAA--TCG-CAGCCAC-----------------------A----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 04:46 PM