ID:

dsi_5986

Coordinate:

3l:16204421-16204480 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_16204329_16204420_-]; exon [3l_16204253_16204420_-]; CDS [3l_16204481_16204887_-]; exon [3l_16204481_16204887_-]; intron [3l_16204421_16204480_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------################################################## CATGGAGGGGTGTCAGACGTTCAAGGATTGTCTGCAAAACACCAGCATTGGTAAATAGTTTCTTTCTCTGGGTTTGTACATTTTTCTGAAGTTTTTACATTTCTCCGCAGGTAAATGGTTTTATGACGTCAAGGCGTTGGTGGAGAAGAATCGTGGGCAG ************************************************.................(((((..((((.(((((...)))))...)))).....)).)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902009 testis	M024 male body	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
...................TTCAAGGATTGTCTGCAAAACACCAGCAT................................................................................................................	29	0	1	2.00	2	0	1	0	0	1	0
..................GTTCAAGGATTGTCTGCAAAAC........................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0
....................TCAAGGATTGTCTGCAAAACACCAGCA.................................................................................................................	27	0	1	1.00	1	0	0	1	0	0	0
...........................TTGTCTGCAAAACACCAGCAT................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
....................TCAAGGATTGTCTGCAAAACACCAG...................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0
......................................................................................................................TTTTATGACGTCAAGGCGTTGG....................	22	0	1	1.00	1	1	0	0	0	0	0
...........GTCAGACGTTCAAGGATTGTCG...............................................................................................................................	22	1	1	1.00	1	0	0	0	1	0	0
.................................................................................................CATTACTCCGAAGGTAAA.............................................	18	2	3	0.33	1	1	0	0	0	0	0
.............CTGTCGTTCAAGGATGGTCT...............................................................................................................................	20	3	5	0.20	1	0	0	0	1	0	0
...............................................................TTCTCAGGGTTTGTA..................................................................................	15	1	10	0.10	1	0	0	0	0	0	1
............................................................................TTCATTTTTCTGAAGT....................................................................	16	1	11	0.09	1	1	0	0	0	0	0
........................................................................................................CGGCAGGTGAGTGGTTTTA.....................................	19	3	20	0.05	1	0	1	0	0	0	0

Anti-sense strand reads

GTACCTCCCCACAGTCTGCAAGTTCCTAACAGACGTTTTGTGGTCGTAACCATTTATCAAAGAAAGAGACCCAAACATGTAAAAAGACTTCAAAAATGTAAAGAGGCGTCCATTTACCAAAATACTGCAGTTCCGCAACCACCTCTTCTTAGCACCCGTC ************************************************.................(((((..((((.(((((...)))))...)))).....)).)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
.......................................................................................CTTCAAAAATGTGAAGAGGCGT...................................................	22	1	1	2.00	2	2	0	0	0
........CCACAGTCTGCAAGTTCCTA....................................................................................................................................	20	0	1	1.00	1	0	1	0	0
....................................................TTCATCAAAGAAAGAG............................................................................................	16	1	5	0.20	1	0	0	1	0
.....TCCCCACAGTCGCCAAGTC........................................................................................................................................	19	3	20	0.05	1	0	0	0	1

Generated: 04/24/2015 at 02:53 AM