ID:

dsi_5955

Coordinate:

3r:10724677-10724804 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-25.8	-25.5	-25.5

Flybase annnotation

exon [3r_10724110_10724676_-]; CDS [3r_10724110_10724676_-]; CDS [3r_10724805_10724859_-]; exon [3r_10724805_10724978_-]; intron [3r_10724677_10724804_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------################################################## TGAAGCTGTAAAAAATGGTAAAAATCGGCACTCGGGGAGCGCTGAAAAAGGCAAGCGACAAATGGCGACTGTCTTATTGGATTGTTTTTTTCTTTCCTTTGCCACTGCAGTGTACAGAGTTGCATTTTCGAGTATTTTGGCGGTTCTAATTTGAATTTGTTCGTCTTGCTCTTTCCAGAAAGTGGCTCCCAACAACGACCTTTGGATGGTGGCGGAGGAGGGGGCGGT ************************************************(((((((((((((((((((.((((....)))).)))..............))))((((...((((.(((.......)))..))))....))))(((......))))))).))).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M023 head	SRR902008 ovaries	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries
.....................................................AGCGACAAATGGCGACTG.............................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................TGGATGGTGGCGGAGGAGGGGGCG..	24	0	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................TTGGATGGTGGCGGAGGAGGGGGCGG.	26	0	1	1.00	1	0	0	0	1	0	0
.....................AAATCGGCACTCGGGGAGCG...........................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
.................GTAAAAATCGGCACTCGGGGA..............................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
.........AAAAAATGGTAAAAATCGGC.......................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
.........................CGGCCCTGGCGGAGCGCTGA.......................................................................................................................................................................................	20	3	3	0.67	2	1	1	0	0	0	0
.........................CGGCCCTGGCGGAGCGCTG........................................................................................................................................................................................	19	3	15	0.27	4	1	3	0	0	0	0
......................................................................GTCTTATTGGATTGATCTT...........................................................................................................................................	19	2	4	0.25	1	0	0	0	0	0	1
......................................................................GTCTTATTGGATTGA...............................................................................................................................................	15	1	7	0.14	1	0	1	0	0	0	0
....................................................................CAGACTTATTGGATTGTT..............................................................................................................................................	18	2	14	0.07	1	1	0	0	0	0	0

Anti-sense strand reads

ACTTCGACATTTTTTACCATTTTTAGCCGTGAGCCCCTCGCGACTTTTTCCGTTCGCTGTTTACCGCTGACAGAATAACCTAACAAAAAAAGAAAGGAAACGGTGACGTCACATGTCTCAACGTAAAAGCTCATAAAACCGCCAAGATTAAACTTAAACAAGCAGAACGAGAAAGGTCTTTCACCGAGGGTTGTTGCTGGAAACCTACCACCGCCTCCTCCCCCGCCA ************************************************(((((((((((((((((((.((((....)))).)))..............))))((((...((((.(((.......)))..))))....))))(((......))))))).))).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR902009 testis
.......................................................................AGAATAACCAAAAAAAGAAAGAAA.....................................................................................................................................	24	3	19	1.21	23	21	0	0	0	0	2	0	0
.............................................................................................AAGGAAACGGTGACG........................................................................................................................	15	0	2	0.50	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................CCAAGCAGAACGAGGAAG.....................................................	18	2	5	0.20	1	0	1	0	0	0	0	0	0
..........................................................TTTTACCGCTGACAAAATAA......................................................................................................................................................	20	2	7	0.14	1	0	0	0	1	0	0	0	0
..........................................................................ACAGCCTGACAAAAAAAGAAA.....................................................................................................................................	21	3	15	0.13	2	0	0	0	0	0	0	1	1
.............................................................................................................CACATGTCTCAAGGAAA......................................................................................................	17	2	9	0.11	1	1	0	0	0	0	0	0	0
....................................................................................AGAAAAAGAAGAGAAACGGTGA..........................................................................................................................	22	3	10	0.10	1	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................AAATCTAGCACTGCCTCCT.........	19	3	16	0.06	1	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................GGAAAGCTACCACCG...............	15	1	18	0.06	1	0	0	0	0	1	0	0	0
..........................................................................ATAAGCTAACAAAAAA..........................................................................................................................................	16	1	20	0.05	1	1	0	0	0	0	0	0	0
...............................................TCCCGTTCGCTGTTTCC....................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0	0

Generated: 04/24/2015 at 10:47 AM