ID:

dsi_5934

 Coordinate:

3l:7552348-7552417 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.6 -5.2 -4.8

Flybase annnotation

CDS [3l_7552454_7553538_-]; three_prime_UTR [3l_7552363_7552453_-]; exon [3l_7552363_7553538_-]

No Repeatable elements found

Sense Strand Reads

#########################################################################################################-----------------------------------------------------------------
GCGATGCGGAATAGTGTAGTCTCATCATGTGTAAACCATTTCATTGTGTTGTATGTCCCAGAGCATTTTTTATTGTTTGACAATTATATAGCAAATCTAAGTACACCTCTTATCGTTTAGTTGATAGCAGACCAGCGATTCGTTGAACCTAAGTAGGACAAACACTCAGC
**************************************************...((((...(((((........)))))))))......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M024
male body		 M053
female body
 M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
............................................................................................................................TAGCAGAACAGCGATTCGTTGAACC..................... 25 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.................................................................................................................................GACCAGCGATTCGTTGAACCTAAG................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................TAGCAGAACAGCGATTCGTTGAACCTA................... 27 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0
....TGCGGAATAGTGTAGTCTCATCA............................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................AAGTACACCTCTTATCGTTTA................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................AGCAGAACAGCGATTCGTTGA........................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........TAGTGTAGTCTCATCATGTGTAAACCA.................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........AATAGTGTAGTCTCATCAT.............................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.CGATGCGGAATAGTGTAGTCTCATC................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................TTGATAGCAGAACAGCGATTCGTTGAACC..................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................CTAAGTACACCTCTTATCGTTTAGTTGAT............................................. 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................TCGTTTAGTTGATAGCAGAACAGCGAT............................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................GATTCGTTGAACCTAAGTAGG............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................CAGACCAGCGATTCGTTGAAC...................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................CTAAGTAGGACAAACACTCAG. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................TTATCGTTTATTTGATAGT.......................................... 19 2 4 0.50 2 0 1 0 0 0 1 0 0 0 0
.............................................................................................................TTATCGTTTATTTGATA............................................ 17 1 7 0.43 3 0 0 0 0 0 0 0 0 3 0
............................................................................................................GTTATCGTTTATTTGATAG........................................... 19 2 6 0.33 2 0 0 0 0 2 0 0 0 0 0
..........................................................................................................CAGTTATCGTTTATTTGATAG........................................... 21 3 7 0.29 2 0 0 0 0 1 0 1 0 0 0
.............................................................................................................TTATCGTTTATTTGAT............................................. 16 1 20 0.25 5 0 0 0 0 0 0 0 0 0 5
...................................................TATGTACGAGAGCATTTTTTT.................................................................................................. 21 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................CCTCTTATCGTTAAG.................................................. 15 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TATCGTTTATTTGATAGT.......................................... 18 2 16 0.13 2 0 0 0 0 1 1 0 0 0 0
.........................................................................................................AGTCTTATCGTTCAGTTGAT............................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................ATCACTTATCGTTTATTTGA.............................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................GTTATCGTTTATTTGATAGT.......................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................TTTGACAATTGTATAGG.............................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.........................................CAGTGTGTTGTATGTTC................................................................................................................ 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
....................................................ATGTCCCAGGGCATTTA..................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................ATCGTTTATTTGATAGT.......................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGCTACGCCTTATCACATCAGAGTAGTACACATTTGGTAAAGTAACACAACATACAGGGTCTCGTAAAAAATAACAAACTGTTAATATATCGTTTAGATTCATGTGGAGAATAGCAAATCAACTATCGTCTGGTCGCTAAGCAACTTGGATTCATCCTGTTTGTGAGTCG
**************************************************...((((...(((((........)))))))))......................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
.............................................................................................................................TCGTCTGGTCGCTAAGCA........................... 18 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................CTATCGTCTGGTCGCTAAGCAA.......................... 22 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................CTGGTCGCTAAGCAACTT....................... 18 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................CTGGTCGCTAAGCAACTTGGA.................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................TTCGTTTAGGTTCATGTGGAGA............................................................ 22 2 1 1.00 1 0 1 0 0 0 0
............TCACATCAGAGTAGTACACAT......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.................CCAGAGTAGTACACATTTG...................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................TTGTCGCTAAGCAACTTGGAT................... 21 1 1 1.00 1 0 0 0 0 1 0
..................................................................................................................CAAATCAACTATCGTCTGG..................................... 19 0 1 1.00 1 0 0 0 1 0 0
.........................................GTAACGCAACATACAGGGTC............................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 1
....................................................TACTGGGTCTCGTAA....................................................................................................... 15 1 8 0.25 2 0 2 0 0 0 0
...............................................................................................AGATTCGTGAGGAGAATTG........................................................ 19 3 18 0.06 1 0 0 1 0 0 0

Generated: 04/24/2015 at 10:22 AM