ID:

dsi_592

 Coordinate:

3l:8151103-8151168 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.7 -9.3 -9.3 -9.3

Flybase annnotation

CDS [3l_8150216_8151102_-]; exon [3l_8149985_8151102_-]; CDS [3l_8151169_8151873_-]; exon [3l_8151169_8151873_-]; intron [3l_8151103_8151168_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------##################################################
ACACGTACAGACGATGGCCCAGCGAATGCTCCTCGCCACGGCTATTTGTGGTAGGTCGAGAGTTCCCCCAATCCCGCCCTGCAGTCGCTAACTTACCCACAGAGTCCCACTTGCAGGCACTGCAGGCACGTCTCTCCCGGCAGCAAAGGAGTCAGGGCAGCAGCGG
**************************************************............................((((..............................))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
 GSM343915
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
............................................................................................................................................CAGCAAATGATTCAGGGC........ 18 2 5 2.00 10 6 0 0 0 0 0 4 0 0 0
..................................................................................AGTCGCTAACTTACCCACAGAGTCCCACT....................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGCAGGCACTGCAGGCACGTCTCT............................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................TGCAGGCACTGCAGGCACGTCTCTC.............................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................GTCTATTTGTGGAAGATCGAGA......................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................AATTCCACCAGTCCCGCCCTGC.................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..................................................GTAGGTCGCGAGTTC..................................................................................................... 15 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
............................................TTTGTTGTGGGTCGAGAGTT...................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................AGCCCCGTCTCTCGCGGCA........................ 19 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0
....................................................AGGTCGAGAGTTCGCCT................................................................................................. 17 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0
..............................................TGTCGTAGGTCGAGA......................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1
....................................................AGATCGAGAGTTCCCC.................................................................................................. 16 1 9 0.11 1 0 0 0 0 0 0 0 0 0 1
....................AGCGAAGGCTCCTCGT.................................................................................................................................. 16 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..................................................GGAGGTCGAGAGTTC..................................................................................................... 15 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0
....................AGCGAAGGCTCCTCGTC................................................................................................................................. 17 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0
.................................................TATAGGTCGAGAGTTC..................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.....................................................GGTCGAGAGTTCGCGC................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTGCATGTCTGCTACCGGGTCGCTTACGAGGAGCGGTGCCGATAAACACCATCCAGCTCTCAAGGGGGTTAGGGCGGGACGTCAGCGATTGAATGGGTGTCTCAGGGTGAACGTCCGTGACGTCCGTGCAGAGAGGGCCGTCGTTTCCTCAGTCCCGTCGTCGCC
**************************************************............................((((..............................))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 GSM343915
embryo
..................................................................................................TGGCTCAGGGTCAACGTCC................................................. 19 2 3 0.33 1 1 0 0
...............................................................AGAGGGTTAGTTCGGGACG.................................................................................... 19 3 20 0.05 1 0 0 1
...........................................................................................................GTCAACGGCCGTGACGTC......................................... 18 2 20 0.05 1 0 1 0

Generated: 04/24/2015 at 10:43 AM