ID:dsi_5918 |
Coordinate:3l:8292765-8292824 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
CDS [3l_8292646_8292764_+]; exon [3l_8292599_8292764_+]; CDS [3l_8292825_8293012_+]; exon [3l_8292825_8293012_+]; intron [3l_8292765_8292824_+]
No Repeatable elements found
| ##################################################------------------------------------------------------------################################################## GGCCAGAAGAAGGATCGCCCCCAAAACAATGCTGGCGGTCAGCGCAACAGGTACAATTTAAATCCCATAAATAATATCGTTGTTAACCGGCGTTTTTCGTTGGGCAAAAGTGCTCCACAACAGAAATCCACGCTGCTGGAGACCGAAGTGGGCATTACGG **************************************************.............((((..........(((((.....)))))........))))......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................TACAATTTAAATCCCTTAA.......................................................................................... | 19 | 1 | 1 | 8.00 | 8 | 6 | 2 | 0 | 0 | 0 |
| ...................................................TACAATTTAAATCCCTTA........................................................................................... | 18 | 1 | 1 | 7.00 | 7 | 4 | 1 | 2 | 0 | 0 |
| ..................................................GTACAATCTAAATCCCTTA........................................................................................... | 19 | 2 | 2 | 2.50 | 5 | 0 | 2 | 2 | 1 | 0 |
| ..................................................GTACAATTTAAATCCCTTAA.......................................................................................... | 20 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 |
| ...................................................TACAATTTAAATCCCTTAACGA....................................................................................... | 22 | 3 | 5 | 1.20 | 6 | 3 | 2 | 1 | 0 | 0 |
| ..................................................GTACAATTTAAATCCCTTA........................................................................................... | 19 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..................................................GTACAATGTAAATCCCTTAA.......................................................................................... | 20 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................AGAAATCCACGCTGCTGGA.................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 |
| ..................................................GTACAATTTAAATCCCTTAACGA....................................................................................... | 23 | 3 | 3 | 0.67 | 2 | 0 | 2 | 0 | 0 | 0 |
| ...................................................TACAATCTAAATCCCTTAA.......................................................................................... | 19 | 2 | 6 | 0.33 | 2 | 1 | 0 | 1 | 0 | 0 |
| ..................................................GTACAATTTAAATCCCT............................................................................................. | 17 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 |
| .................................................AGTACAATTTAAATCCCTTA........................................................................................... | 20 | 2 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 |
| ...................................................TACAATTTAAATCCCT............................................................................................. | 16 | 1 | 8 | 0.25 | 2 | 1 | 0 | 0 | 1 | 0 |
| .................................................AGTACAATCTAAATCCCTTA........................................................................................... | 20 | 3 | 12 | 0.25 | 3 | 2 | 0 | 1 | 0 | 0 |
| ...................................................TACAATTTAAATCCCTTAACG........................................................................................ | 21 | 3 | 9 | 0.22 | 2 | 2 | 0 | 0 | 0 | 0 |
| .....................................................CAATTTAAATCCCTTAA.......................................................................................... | 17 | 1 | 5 | 0.20 | 1 | 0 | 0 | 1 | 0 | 0 |
| ...................................................TACAATCTAAATCCCTTA........................................................................................... | 18 | 2 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 |
| .......................................................ATTTAAATCCCTTAA.......................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
| .................................................AGTACAATCTAAATCCCTT............................................................................................ | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................TATCGTTGTTAATCG....................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
|
CCGGTCTTCTTCCTAGCGGGGGTTTTGTTACGACCGCCAGTCGCGTTGTCCATGTTAAATTTAGGGTATTTATTATAGCAACAATTGGCCGCAAAAAGCAACCCGTTTTCACGAGGTGTTGTCTTTAGGTGCGACGACCTCTGGCTTCACCCGTAATGCC
**************************************************.............((((..........(((((.....)))))........))))......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
M023 head |
|---|---|---|---|---|---|---|---|---|---|---|
| ................CGAGGGCTTTGTTACGACTG............................................................................................................................ | 20 | 3 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 |
| .................GGGGGTTTTGTATCGGCCGC........................................................................................................................... | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 |
| ...............................GAACGCCAGTCGCGT.................................................................................................................. | 15 | 1 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 |
| .................................................TCATGTTAGATTTAGGGAATT.......................................................................................... | 21 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................ACCTCTGGCTACACCCT....... | 17 | 2 | 20 | 0.15 | 3 | 0 | 0 | 0 | 3 | 0 |
| ....................................CCAGTCGCATTGTCAATGA......................................................................................................... | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 1 |
| ......................................................................................GGCCGCCAAAAGCAA........................................................... | 15 | 1 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 |
| .............................AGGAACGCCAGTCGCGT.................................................................................................................. | 17 | 2 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTCGGGCTTCACCAGTA..... | 17 | 2 | 17 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..................GGGGTTTGGCTACGACC............................................................................................................................. | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................................................TCAGGAGATGTTGTCT.................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..............................GGAACGCCAGTCGCGT.................................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:48 AM