ID:

dsi_590

 Coordinate:

3r:13328248-13328486 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.8 -12.8 -12.7

Flybase annnotation

exon [3r_13328487_13328640_-]; CDS [3r_13328487_13328640_-]; exon [3r_13328008_13328247_-]; CDS [3r_13328008_13328247_-]; intron [3r_13328248_13328486_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGCAAAACACTAACCACACCTGGTAATCTTTTGAACATCGCGAACGTGGTAAGTAAGGTCGATGGGCGGCAGGGTTAACTGACTCTCAATACAGACCGAAAAGTGCCGAAAGTGTAGCACACACCATTTCACTCCAATTGGTTGCACAAAAATCCAGACGGGACTGAACCTGAACTTGAAACAATGTTTCGTCATTGAAACCACACAACACTTAAAACAATCCGGACAGTAGAGCAGACTGCAGGCTTAATTGCAGGCTGTCGATTAAACATTCCCTTGAAATTCAGGCTAGCGACAGCGAAGATTCCATTGACTTGCCTGGGGAGGCGCGTGAAGA
******************************************************************************************************************************************************************************************************************************....((((((........((((((......)))))))))))).....................****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
..................................GAACATCGCGAACGTGGT............................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................CACCTGGTAATCTTTTGAACAT........................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AACAAGGTTTCGTCATTGACAAC....................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CGATTAAACATTCCCTTGAAAT...................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCCGGACAGTAGAGCAGACTGC............................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATTCCATTGACTTGCCTG................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GACAGTAGAGCAGACTGC............................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................CTTGGTAATCTTGTGAACCTC.......................................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGGACAGTAGAGCAGACT................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AATCCGGACAGTAGAGCAGACTGC............................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATCCAGACGGGACTGAACC....................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATTCCATTGACTTGCCTGGGGAGGCGC....... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATCCAGACGGGACTGAACCT...................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAATTAAGGTCGATGGGC.............................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................CCTGGTAATCTTGTGAAACTC.......................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GACTTGCATGGGGAGGACCG...... 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................TCAGGGTTTAGTGACTCTCAA........................................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................GTACATCGGGAACGTTGTA.............................................................................................................................................................................................................................................................................................. 19 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................CTGAACTTGAAACCA......................................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0
......................TGGTAATCTTGTGAA.............................................................................................................................................................................................................................................................................................................. 15 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................TTGCACACCCCATTTCTCTC........................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................TTAAAATAATCTGGACAGTC.......................................................................................................... 20 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGTTTAGTCATGGGAACCA...................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................GAGGAGACTGAACCTGA.................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
....................CTGGGTAATCTTTTGAA.............................................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
......................TGGTAATCTTGTGAAACTC.......................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................TAATGGCGGCAGGGTTAAC.................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................CAAAAATACAGACGGAACTA........................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................CTGGACAGAACCTTAACT................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GTTCGTTTTGTGATTGGTGTGGACCATTAGAAAACTTGTAGCGCTTGCACCATTCATTCCAGCTACCCGCCGTCCCAATTGACTGAGAGTTATGTCTGGCTTTTCACGGCTTTCACATCGTGTGTGGTAAAGTGAGGTTAACCAACGTGTTTTTAGGTCTGCCCTGACTTGGACTTGAACTTTGTTACAAAGCAGTAACTTTGGTGTGTTGTGAATTTTGTTAGGCCTGTCATCTCGTCTGACGTCCGAATTAACGTCCGACAGCTAATTTGTAAGGGAACTTTAAGTCCGATCGCTGTCGCTTCTAAGGTAACTGAACGGACCCCTCCGCGCACTTCT
******************************************************....((((((........((((((......)))))))))))).....................****************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
..........................................................................................................................................................GGGACTGCCCTGACTTGG....................................................................................................................................................................... 18 2 2 1.00 2 0 2 0 0 0 0 0
..........................................................................................................................................................AGGCCTGCACTGACCTGGACTT................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
..........TGATTGGTGTTGACCAT........................................................................................................................................................................................................................................................................................................................ 17 1 2 0.50 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................AGCTAATTTGTAAGGAAA........................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0
.........................................................................CCCAATGGGCTGAGTGTTA....................................................................................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 1 0 0 0
......................................................................................................................................................................................................CTTTGGGGGGTTGTGAAT........................................................................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0
................................................................................................................................AACGTGAGGTTAACCA................................................................................................................................................................................................... 16 1 8 0.13 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................CTTTGGTAGGTTGTGAAT........................................................................................................................... 18 2 9 0.11 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................................TTAGGCCTGACATCTTG...................................................................................................... 17 2 11 0.09 1 0 0 0 0 1 0 0
.........................................................................................................................................................TAGGTCTGGCCTAAGTTGG....................................................................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0 0 0
......................................................................................................................................................................................TGTTACAAAACAGTAA............................................................................................................................................. 16 1 15 0.07 1 0 0 1 0 0 0 0
..........................................................................................................................................................AGGTCTGGCCTAAGTTGGA...................................................................................................................................................................... 19 3 19 0.05 1 0 1 0 0 0 0 0
..................................................................................................GCATTTCACGGCTTGC................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................TTTTTTAGGCCTGTCATGTA....................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1
................................................ACCGTTCATTCCAGGTAGC................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0
..........................................................................................................................TGTGGTAAAGTGTGCTT........................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0
....................................TGCAGGGCTTGCACCA............................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:13328198-13328536 - dsi_590 CAAGCAAAACACTAACCACACCTGGTAATCTTTTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GATGGGC--GGCAG--GGTTA--ACTGACTCTC-----AA-TAC-------------AGACCGA--AAAGT-GCCGAAA-GTGTAGCAC--ACACCAT---TTCACTCCAATTGGT-TGC-ACAA-A---AATCCAGACGGGA-----CTGAACCT-G------AACTT-GAAACAA-TGTTTCG--TC-AT-TGAAAC---CACACA----------------------------------------------------ACACTT-AAAACAATCCGGACAGTAGAGCAGAC--------------------TGC------A--GGCTTAATTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGACTTGC---CTG---GGGAGGC---GCGTGA---AGA
droSec2 scaffold_0:14192600-14192941 - CAAGCAAAACACTAACCACACCTGGTAATCTTTTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GATGGGC--GGCAG--GGTTT--ACTGACTCTC-----AA-TAC-------------AGACCGA--AAAGT-GCGGAAA-GTGTAGCAC--ACACCAT---TTCACTCCAATTGCT-TAC-ACAA-A---AATCCAGACGGGA-----CTGAACCT-G------TACTT-AAAACAA-TGTATCG--TC-AT-TGAAAG---CACACA----------------------------------------------------ACACTT-AAAACAATCCGGACAGTAGAGCAGAC--------------------TGC------A--GGCTTAATTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGACTTGC---CTG---GGGAGGC---GCGTGAAGAAGA
dm3 chr3R:7776684-7777021 + CAAGCAAAACACTAACCACACCTGGTAATCTTTTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GATGGGC--GGCAG--GGTTA--ACTGACTCTC-----AA-TAC-------------GGACAGA--AAAGT-GCCGAAA-GCGTAGCAC--ACACCAT---CTCACACAAATTGGT-TGC-ACAA-----AATTTAGACGGGA-----CTGAAC-C-A------AACTG-AAAACGA-TGTTTCG--TC-GT-TGAAAG---CACACA----------------------------------------------------AAACTTAAAAACAATCCGGACAGTAGAGCAGAC--------------------TGC------A--GGCTTGAGTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGACGTGC---CTG---TGGAGGC---GCGTGG---AGA
droEre2 scaffold_4770:13843160-13843487 - CAAGCAAAACACTAACCACACCTGGTAATCTTTTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GAGGGG-C-GGCAG--GGTTA--ACTGACTCTC-----AA-TAC-------------GGACCGA--AAAGT-GCCGAAA-GTGTAGCAC--ACAT-AT---CACACTCCAATTGGT-TGC-ACAC-A---AACCCCGACGGGA-----CTGAAC-T-A------AACTGCAAAACGA-TGTTCCG--TC-AT-TGGATG---CACACA----------------------------------------------------A-ACCT-AAAACCATTCGGACAGTAGGGCAGAC--------------------TGC------A--GGCTTAAGTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGACGTGC---CTG---GGGAGGC---------------
droYak3 3R:16642473-16642801 - CAAGCCAAACACTAACCACACCTGGTAATCTATTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GAG-GGCC-AGCAGCGTGTTA--ACTGACTCTC-----AG-GAC-------------GTACCGA--AAAGT-GCCGAAT-GTGTGGCAC--ACAT------CTCACTCCAATTGGT-TGC-ACACGA---AACCACGACGAGA-----CTGAAT-T-A------AACTG-CAAACGA-TGTTTTG--TC-AT-TGAAAG---CACACA----------------------------------------------------AACCTT-ACAACAATTCGGACAGTAGGGCAGAC--------------------TGC------A--GGCTTAAGTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATGCAGGCTAGCGACAGCGAAGATTCCATTGACGTGC---CTG---GGGAGGC---------------
droEug1 scf7180000409557:474005-474339 + CAAGCAAAACACTAACACCACCTGTTAATCTATTGAACATCGCGAATGTGGTAAGTAA--G---------GTCA---GGGCG-TGCAG--GGTTA--ACTGACACTC-----AAAAAC-------------AGACTGA--ATAGT-GC-GAAA-GTGTTTTTAAAACAT------CTCACCCCAATTGGT-TGC-TTACAA---AATCCAAACGGGA-----CTAAAC-T-A------AACCG-AAACTAA-GGTTTCG--TT-AT-TAG-TA---AACCCA----------------------------------------------------A-ACTA-AGAACCATACGGACAGTAGAACAGAC--------------------TGC------A--GATAGAAGTGCAGACTGTCT-ATTAAACATTCCCTTGAA---ATTTAGGCTAGCGACAGCGAAGATTCCATTGACCTGC---CTG---GAGAGGG---CCGAGT---GGA
droBia1 scf7180000299102:9490-9818 - CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCGAATGTGGTAAGTAA--G---------GTCA---GGGAG-TGTAG--GGTTA--ACTGACTCTC-----AA-AAC-------------GGACCGA--AAAGT-GCCCAAA-GCAAGGAGC--ACAT------CTCACCCCAATTGGT-TGC-ACACAA---AACCCAGACGGGA-----CTGAACCT-A------AACTG-AA-------GTTTCA--CC-AT-CAA-AG---AACACA----------------------------------------------------A-ACGA-ATGACAATACGGACTGTAGGACAGAC--------------------TGC------A--GATAGAAGTGCAGACTGTCGAATTAAACATACCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGGCTTGC---CTG---GGGAGGT---GCATGG---AGA
droTak1 scf7180000415409:717977-718303 - CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCGAACGTGGTAAGTAA--G---------GTCA---GGGCG-TGTAG--GGTTA--ACTGACTCTC-----AA-AAC-------------GGACCGA--AAAGT-GCCCTAA-GTGCGGCAC--AACT------CTCACCCCAATTGGT-TGT-ACAC-G---------AACGATA-----CTTAAACTGA------AACAG-AAACTGA-TGTTTCG--CC-AT-TAA--G---AACACT----------------------------------------------------T-ACTA-AAAACGCAACGGACTGTAGAGCAGAC--------------------TGC------A--GATAGAAGTGCAGACTGTCG-ATTAAACATACCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGGCTTGC---CTG---TGGAGGC---GCGTGG---AGA
droEle1 scf7180000490967:319067-319374 - CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCAAACGTGGTAAGTAA--G---------GTC-G---GGCA-TGCAG--GGCTA--ACTGACTATC-----AT-TAC-------------GGACCGA--AAAGT-GCCGAAA-GTGTTGCAC--ACAT------C-----TCGATTGGT-TAA-ACAA-T---AACGCTAACAAGACCGAAT----C-G-AAACAGAAACTG-AAACGG--------------A-------------------------------------------------------------------------TT-GAAATGAGACAGACAGTGGGGCAGAC--------------------TGC------A--GATAGAAGTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCCAGCGACAGCGAAGATTCCATTGGCTTGC---CTG---GGGAGGC---GCTAGG---AGA
droRho1 scf7180000780217:7525-7855 - CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-G--GGGCT-TGCAG--GGTTA--ACAGACTCTT-----AA-TAC-------------GGACCGA--AAAGT-GCCGAAA-GTGTTGCAC--ACAT------CTCACCCCAATTGGT-TAA-ACAA-T---AACCCAAACGGGA-----CAGAAC-T-A------AACTG-AAAT-------TGTAGGCG-AAACAA--A---AACCCA----------------------------------------------------A-ACTT-GAAATGAGACAGACAGTAGTGCAGAC--------------------TGC------A--GATAGAAGTGCAGACTGTCT-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGGCTTGC---CTG---GTGAGGAGACGCTTGG---AGA
droFic1 scf7180000453580:6552-6886 - CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCGAACGTGGTAAGTAA--G---------CTCA---GGGCT-TGAAG--GGCTT--ATTGACTCTT-----AA-AAC-------------GGACCGA--AAAGT-GCCAAAA-GTGAGGCAC--AAAG------CTCACCCCAATTGGTTTGC-ACAC-T---AACCCCAACTGGA-----CTGAAC-T-A------AACTG-AAACAGATTGTTTCG--CC-AAAC----GCAAAACACA----------------------------------------------------A-ACTG-AAAACCAGACGGACACTAGTGCAGAC--------------------TGC------C--GATAGAAGCGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCGTCGACTTGC---CTG---GGGAGGC---GCATGG---AGA
droKik1 scf7180000302255:258973-259323 + CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCTCGAACTTGGTAAGTAT--GGGTATGGTGGTCA---GGGCT-TGCAG--GGTTA--ACTGACTCTC-----AA-AAC-------------GGACCGA--AAAAGTGCCTTAA-ACTAGGCGCACACAT------ATCACATCAATTGGT-CGC-TCAC-TCCTCACCCGAACGGGA-----CTGAAC-T-A------AACAG-AATT-------TTAATGAGCAAACAT--A---AACCCA----------------------------------------------------A-ACTG-AAACCGAGACAGACAAAAAAT-------------------------AGTAGCGGAA--GGTTGTTGTGAAGACTTTCG-ATTAAACATGCCCTTGAA---ATTCAGGCCAGCGACAGCGAAGATTCTATTGGCCTGC---CTGCTGGTGTGGCGGCGCAGGA---GCA
droAna3 scaffold_13340:15436932-15437211 - CAAGCAAAACACTAACTACACCTGTTAATCTTTTGAACATCGCAAATGTGGTAAGTAA--G---------GTC-T--GA--T-AACGA--GGCTAATTCTGACTCTC-----AA-TAC-------------GGACGGA--AAAGT-GCCGAAAAGTGGGGCAT--TCAT------TTTACACTAATTGGC-CGC-ATAA-A---ACTCCGAACCGAA-----CTGAA-------------------ACCT-------------------------------------------------------------------------------------------------AGACTCACAAA-----------------------------TTC------A--TACCCAAAACCACTGCCTCC-ATTAAACGTGCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCGTCGGAATGC---CAG---GGGACAC---ACTTGG---AAA
droBip1 scf7180000396708:4594659-4594942 + CAAGCAAAACACTAACTACACCTGTTAATCTTTTGAACATCGCAAATGTGGTAAGTAA--G---------GTC-T--G--CT-AACGA--GGCTAATTCTGACTCTC-----AA-TAC-------------GGACGGA--AAAGT-GCCGAAA-GTCGGGCAT--TCAT------AATACTCCCATTGGC-TGCCATAA-A---ACTCTGAACCGA-----------------------ACTG-AAAC-------TT----------------------------------------------------------------------------------------------TGACAATAAAA-AAAA--------------------TGC------A--TTTCCAAAACCACTGCCTCC-ATTAAACGTGCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGACTCCGTCGGCCTGC---CTG---AGGACAC---ACTTGG---AAA
dp5 2:22533823-22534155 + CTAGCAAATCACTAACAACACCTGTTAATCCATTGAACATCGCGAATGTGGTAAGTAAAAG---------GCAA-A--GGCATGGCCA--GGTTATTATCGACTCTC-----AT-TACCACCCACTACCACCGACCAACAAAAGT-GTTAAAA-GTGCAACAC--ATAC-ATGCGCTACACCCAATTGGT-TGC-ACAC-A---------AACGATA-----CTGAA-----AACCGATACTG-AAAA--------------------------------------------------------------------------------------A-ACTG-ACTAAAAGACAGACAATT----------------------------TGCAAAGGCATGGAATGCTGGGAACACATGAA-ATTTAACATGAACTTGAA--CATTCAGGCCAGCGACAGCGAAGATTCCAATACTGGGG---AGG---AGGAGGCGGCGCACGC---AAA
droPer2 scaffold_3:5312713-5313045 + CTAGCAAATCACTAACAACACCTGTTAATCCATTGAACATCGCGAATGTGGTAAGTAAAAG---------GCAA-A--GGCATGGCCA--GGTTATTATCGACTCTC-----AT-TACCACCCACTACCACCGACCAACAAAAGT-GTTAAAA-GTGCAACAC--ATAC-ATGCGCTACACCCAATTGGT-TGC-ACAC-A---------AACGATA-----CTGAA-----AACCGATACTG-AAAA--------------------------------------------------------------------------------------A-ACTG-ACTAAAAGACAGACAATT----------------------------TGCAAAGGCATGGAATGCTGGGAACACATGAA-ATTTAACATGAACTTGAA--CATTCAGGCCAGCGACAGCGAAGATTCCAATACTGGGG---AGG---AGGAGGCGGCGCACGC---AAA
droWil2 scf2_1100000004943:3273687-3273995 + CTAGCAAAACACTAACAACACCTGTTAATCTCATGAACCTGACAAATGTGGTAAGTAATAA---------ACAA-A--GGCC-AAAATACTGTAA--ACAAAATAGA-----AA------------------------------------------------------------------------------------------AACGAAGACAAAC-----ATAAAC-A-A------AACAA---AAAAA-TGCATCT--TG-T-----------------GCATTGAAATTGGTTGTTTGCTGCACACGTACAAAAAAAAAATATATATATG---------------ACAGACAAAAGATACTAT--------CTAAA---TCGC--AACTGGCAA------------GGTCGTTAG-CATTAACATGAACTTGAA---ATTCAGGCCAGCGACAGCGAAGATTCCCATGAGGAGCTCTCAG---GGAATGC---TCCTGC---CTC
droVir3 scaffold_13047:1685317-1685590 + dvi_15155 CAAGCAAAACACTAACAACATCTGTTAATATCTTGAACATGTCGAACGTGGTAAGTAG--A---------GC-AG---TGTG-TCTCT--GGCTGCATTTGACTCAA-TTTTAA-CTT-------------GTG------CAAGT-GCCA--A-GTGCAACAT------------G-AAATTAAATTGGT-TGC-CCAA-A----------------------------------------------------------------------TG---CACACA----------------------------------------------------A----------------GCAATGTACACCAGACCAAAGGGTCTACG-------------------TAGTTAACAGAACGCCTTGC-AATTAACATGAACTTGAA---ATTCAGGCAAGCGACAGCGAAGATTCAATTGCCGCTC---CTG---AGGAGGC---AGCTCA---TGC
droMoj3 scaffold_6540:5703431-5703691 + CAAGCAAATCACTAACAACACCTGTTAATCTCTTGAACATGTCGAATGTGGTAAGTAG--C---------GA-AGTG-TGTC-TGTGG---GCTGCACTTGACTCGT-TTTTAA-GTT-------------GTGCC------TGT-------------TGC---AAC-A--A---G-AATTTAAACTGGT-TGC-ACTT-G-------------------------------------A----------------------------------------------------------------------------------------------------------------GCACGGCACACCAGACCAAAGTGTCAGCG-------------------TACTAAATCAAACGCTTTGC-CATTAACTTGAATTCGAA---ATTCAGGCAAGCGACAGTGAAGATTCAAATGCTGCCC---CGG---TGGAGGC---CACACT---AGC
droGri2 scaffold_15074:6077375-6077661 - CAAGCAAAACACTAACAACACCTGTTAATCAATTGAACATGTCGAACGTGGTAAGTAG--A---------GA-AG---TGCG-TCTCT--GGCTGCATTTGACTTGAATTTTGA-CTT-------------GT----G--CAAGT-GCCGA---GTGCAATTGCAACA---T---GAA-ACTCAATTGGT-TGC-CCAA-A----------------------------------------------------------------------TG---CACACA----------------------------------------------------A--------AACAAT--GCACAGCAGACCAAAT-----AGTCAGCGTAC----T---A---AACAGAA-----TGC--CCTGCCA-TTTACATATGAACTTGACCACACTCAGGCAAGCGACAGCGAAGATTCAATTGCCGCCA---ATG---AGGAGGCAACGCATG------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAGCAAAACACTAACCACACCTGGTAATCTTTTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GATGGGC--GGCAG--GGTTA--ACTGACTCTC-----AA-TAC-------------AGACCGA--AAAGT-GCCGAAA-GTGTAGCAC--ACACCAT---TTCACTCCAATTGGT-TGC-ACAA-A---AATCCAGACGGGA-----CTGAACCT-G------AACTT-GAAACAA-TGTTTCG--TC-AT-TGAAAC---CACACA----------------------------------------------------ACACTT-AAAACAATCCGGACAGTAGAGCAGAC--------------------TGC------A--GGCTTAATTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGACTTGC---CTG---GGGAGGC---GCGTGA---AGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................GAACATCGCGAACGTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..................CACCTGGTAATCTTTTGAACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CG-ATTAAACATTCCCTTGAA---AT..................................................................2211.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................TCCGGACAGTAGAGCAGAC--------------------TGC------.................................................................................................................2211.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATTGACTTGC---CTG---......................1811.00110000000000000000
................................................................................................................................................................................................................................................................................................................................................................GACAGTAGAGCAGAC--------------------TGC------.................................................................................................................1811.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................CGGACAGTAGAGCAGAC--------------------T.........................................................................................................................1811.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................AATCCGGACAGTAGAGCAGAC--------------------TGC------.................................................................................................................2411.00100100000000000000
.............................................................................................................................................................................................................ATCCAGACGGGA-----CTGAACC........................................................................................................................................................................................................................................................................................1911.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATTGACTTGC---CTG---GGGAGGC---GC..........2711.00101000000000000000
.............................................................................................................................................................................................................ATCCAGACGGGA-----CTGAACCT-......................................................................................................................................................................................................................................................................................2011.00100100000000000000
droSec2
CAAGCAAAACACTAACCACACCTGGTAATCTTTTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GATGGGC--GGCAG--GGTTT--ACTGACTCTC-----AA-TAC-------------AGACCGA--AAAGT-GCGGAAA-GTGTAGCAC--ACACCAT---TTCACTCCAATTGCT-TAC-ACAA-A---AATCCAGACGGGA-----CTGAACCT-G------TACTT-AAAACAA-TGTATCG--TC-AT-TGAAAG---CACACA----------------------------------------------------ACACTT-AAAACAATCCGGACAGTAGAGCAGAC--------------------TGC------A--GGCTTAATTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGACTTGC---CTG---GGGAGGC---GCGTGAAGAAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CAAGCAAAACACTAACCACACCTGGTAATCTTTTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GATGGGC--GGCAG--GGTTA--ACTGACTCTC-----AA-TAC-------------GGACAGA--AAAGT-GCCGAAA-GCGTAGCAC--ACACCAT---CTCACACAAATTGGT-TGC-ACAA-----AATTTAGACGGGA-----CTGAAC-C-A------AACTG-AAAACGA-TGTTTCG--TC-GT-TGAAAG---CACACA----------------------------------------------------AAACTTAAAAACAATCCGGACAGTAGAGCAGAC--------------------TGC------A--GGCTTGAGTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGACGTGC---CTG---TGGAGGC---GCGTGG---AGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................TAATCTTTTGAACATCGCGAACGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGCAGGCTGTCG-ATTA.....................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGTGC---CTG---TGGAG.................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---ATTCAGGCTAGCGACAGCGA................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGTGC---CTG---TGGAGGC---GT..........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................CTGAAC-C-A------AACTG-AAAACGA-T................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................A-TGTTTCG--TC-GT-TGAAAG---CACA.....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................GGTTA--ACTGACTCTC-----AA-TAC-------------G.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGACGTGC---CTG---TGGAG.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTAGACGGGA-----CTGAAC-C-A------AACTG-AAAAC....................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC---CTG---TGGAGGC---GCGTGG---AG.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGC---CTG---TGGAGGC---GCGT........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AGAGCAGAC--------------------TGC------A--GGCTTGAGTGCA..................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAA---ATTCAGGCTAGCGAC.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................ACTG-AAAACGA-TGTTTCG--TC-GT-TGAAAG---.........................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................TGGTAAGTAA--G---------GTC-GATGGGC--AA........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................AGA--AAAGT-GCCGAAA-GCGTA..............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................GTGGTAAGTAA--G---------GTC-GATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ACAGA--AAAGT-GCCGAAA-GCGTA..............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACCACACCTGGTAATCTTTTGAACATCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTGCAGGCTGTCG-ATTAAACA.................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................AGTAA--G---------GTC-GATGGGC--GGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACATTCCCTTGAA---ATTCA...............................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAGTAA--G---------GTC-GATGGGC--GG........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................A------AACTG-AAAACGA-TGTTTCG--TC-GT-TG................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATTGACGTGC---CTG---TGG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGTGC---CTG---TGGAGGC---............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................GTAAGTAA--G---------GTC-GATGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................A------AACTG-AAAACGA-TGTTTCG--T.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AGAGCAGAC--------------------TGC------A--GGCTTG........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................TTTGAACATCGCGAACGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACACTAACCACACCTGGTAATCTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAGCGAAGATTCCATTGACGT.................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................TTTGAACATCGCGAACGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGACAGCGAAGATTCCATTGACG..................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GA-TGTTTCG--TC-GT-TGAAAG---.........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CTAACCACACCTGGTAATCTTTTGAACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CATCGCGAACGTGGTAAGTAA--G---------GT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CACCAT---CTCACACAAATTGAA-..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTAAGTAA--G---------GTC-GATGGGC--G.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGACAGCGAAGATTCCATTGACGT.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACACAAATTGGT-TGC-ACA.......................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................GGACAGTAGAGCAGAC--------------------TG........................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGGCTGTCG-ATTAAACAT................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................GCAG--GGTTA--ACTGACTCTC-----AA-TA........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTGACGTGC---CTG---TGGAGG................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AACAATCCGGACAGTAGAGCAA................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................AGTAGAGCAGAC--------------------TGC------A--GGCT..........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................CGCGAACGTGGTAAGTAA--G---------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
....................................................................................................................................................................................................................................................................................................................................................AAAAACAATCCGGACAGTAG.....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGTGC---CTG---TGGAG.................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TGACTCTC-----AA-TAC-------------GGACAGA--AAAGT-GC.........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AAACAATCCGGACAGTAGAGCAGAC--------------------T.........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AAA-GCGTAGCAC--ACACCAT---C.............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................ATCCGGACAGTAGAGCAGAC--------------------TGC------A--GG............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGTGC---CTG---TGGAGGC---GCGTGG---AGA2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAAGCAAAACACTAACCACACCTGGTAATCTTTTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GAGGGG-C-GGCAG--GGTTA--ACTGACTCTC-----AA-TAC-------------GGACCGA--AAAGT-GCCGAAA-GTGTAGCAC--ACAT-AT---CACACTCCAATTGGT-TGC-ACAC-A---AACCCCGACGGGA-----CTGAAC-T-A------AACTGCAAAACGA-TGTTCCG--TC-AT-TGGATG---CACACA----------------------------------------------------A-ACCT-AAAACCATTCGGACAGTAGGGCAGAC--------------------TGC------A--GGCTTAAGTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGACGTGC---CTG---GGGAGGC---------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACATTCCCTTGAA---ATTCAGGCTA..........................................................2411.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................GC------A--GGCTTAAGTGCAGGCTGTC...........................................................................................2211.0011000000
droYak3
CAAGCCAAACACTAACCACACCTGGTAATCTATTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-GAG-GGCC-AGCAGCGTGTTA--ACTGACTCTC-----AG-GAC-------------GTACCGA--AAAGT-GCCGAAT-GTGTGGCAC--ACAT------CTCACTCCAATTGGT-TGC-ACACGA---AACCACGACGAGA-----CTGAAT-T-A------AACTG-CAAACGA-TGTTTTG--TC-AT-TGAAAG---CACACA----------------------------------------------------AACCTT-ACAACAATTCGGACAGTAGGGCAGAC--------------------TGC------A--GGCTTAAGTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATGCAGGCTAGCGACAGCGAAGATTCCATTGACGTGC---CTG---GGGAGGC---------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................GTGTTA--ACTGACTCTC-----AG-GAC-------------GTACC.....................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.....................................................AGTAA--G---------GTC-GAG-GGCC-AGCAGCGTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEug1
CAAGCAAAACACTAACACCACCTGTTAATCTATTGAACATCGCGAATGTGGTAAGTAA--G---------GTCA---GGGCG-TGCAG--GGTTA--ACTGACACTC-----AAAAAC-------------AGACTGA--ATAGT-GC-GAAA-GTGTTTTTAAAACAT------CTCACCCCAATTGGT-TGC-TTACAA---AATCCAAACGGGA-----CTAAAC-T-A------AACCG-AAACTAA-GGTTTCG--TT-AT-TAG-TA---AACCCA----------------------------------------------------A-ACTA-AGAACCATACGGACAGTAGAACAGAC--------------------TGC------A--GATAGAAGTGCAGACTGTCT-ATTAAACATTCCCTTGAA---ATTTAGGCTAGCGACAGCGAAGATTCCATTGACCTGC---CTG---GAGAGGG---CCGAGT---GGASizeHit CountTotal NormTotal
No Reads
droBia1
CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCGAATGTGGTAAGTAA--G---------GTCA---GGGAG-TGTAG--GGTTA--ACTGACTCTC-----AA-AAC-------------GGACCGA--AAAGT-GCCCAAA-GCAAGGAGC--ACAT------CTCACCCCAATTGGT-TGC-ACACAA---AACCCAGACGGGA-----CTGAACCT-A------AACTG-AA-------GTTTCA--CC-AT-CAA-AG---AACACA----------------------------------------------------A-ACGA-ATGACAATACGGACTGTAGGACAGAC--------------------TGC------A--GATAGAAGTGCAGACTGTCGAATTAAACATACCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGGCTTGC---CTG---GGGAGGT---GCATGG---AGASizeHit CountTotal NormTotal
No Reads
droTak1
CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCGAACGTGGTAAGTAA--G---------GTCA---GGGCG-TGTAG--GGTTA--ACTGACTCTC-----AA-AAC-------------GGACCGA--AAAGT-GCCCTAA-GTGCGGCAC--AACT------CTCACCCCAATTGGT-TGT-ACAC-G---------AACGATA-----CTTAAACTGA------AACAG-AAACTGA-TGTTTCG--CC-AT-TAA--G---AACACT----------------------------------------------------T-ACTA-AAAACGCAACGGACTGTAGAGCAGAC--------------------TGC------A--GATAGAAGTGCAGACTGTCG-ATTAAACATACCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGGCTTGC---CTG---TGGAGGC---GCGTGG---AGASizeHit CountTotal NormTotal
No Reads
droEle1
CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCAAACGTGGTAAGTAA--G---------GTC-G---GGCA-TGCAG--GGCTA--ACTGACTATC-----AT-TAC-------------GGACCGA--AAAGT-GCCGAAA-GTGTTGCAC--ACAT------C-----TCGATTGGT-TAA-ACAA-T---AACGCTAACAAGACCGAAT----C-G-AAACAGAAACTG-AAACGG--------------A-------------------------------------------------------------------------TT-GAAATGAGACAGACAGTGGGGCAGAC--------------------TGC------A--GATAGAAGTGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCCAGCGACAGCGAAGATTCCATTGGCTTGC---CTG---GGGAGGC---GCTAGG---AGASizeHit CountTotal NormTotal
No Reads
droRho1
CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCGAACGTGGTAAGTAA--G---------GTC-G--GGGCT-TGCAG--GGTTA--ACAGACTCTT-----AA-TAC-------------GGACCGA--AAAGT-GCCGAAA-GTGTTGCAC--ACAT------CTCACCCCAATTGGT-TAA-ACAA-T---AACCCAAACGGGA-----CAGAAC-T-A------AACTG-AAAT-------TGTAGGCG-AAACAA--A---AACCCA----------------------------------------------------A-ACTT-GAAATGAGACAGACAGTAGTGCAGAC--------------------TGC------A--GATAGAAGTGCAGACTGTCT-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCATTGGCTTGC---CTG---GTGAGGAGACGCTTGG---AGASizeHit CountTotal NormTotal
No Reads
droFic1
CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCGCGAACGTGGTAAGTAA--G---------CTCA---GGGCT-TGAAG--GGCTT--ATTGACTCTT-----AA-AAC-------------GGACCGA--AAAGT-GCCAAAA-GTGAGGCAC--AAAG------CTCACCCCAATTGGTTTGC-ACAC-T---AACCCCAACTGGA-----CTGAAC-T-A------AACTG-AAACAGATTGTTTCG--CC-AAAC----GCAAAACACA----------------------------------------------------A-ACTG-AAAACCAGACGGACACTAGTGCAGAC--------------------TGC------C--GATAGAAGCGCAGGCTGTCG-ATTAAACATTCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCGTCGACTTGC---CTG---GGGAGGC---GCATGG---AGASizeHit CountTotal NormTotal
No Reads
droKik1
CAAGCAAAACACTAACAACACCTGTTAATCTATTGAACATCTCGAACTTGGTAAGTAT--GGGTATGGTGGTCA---GGGCT-TGCAG--GGTTA--ACTGACTCTC-----AA-AAC-------------GGACCGA--AAAAGTGCCTTAA-ACTAGGCGCACACAT------ATCACATCAATTGGT-CGC-TCAC-TCCTCACCCGAACGGGA-----CTGAAC-T-A------AACAG-AATT-------TTAATGAGCAAACAT--A---AACCCA----------------------------------------------------A-ACTG-AAACCGAGACAGACAAAAAAT-------------------------AGTAGCGGAA--GGTTGTTGTGAAGACTTTCG-ATTAAACATGCCCTTGAA---ATTCAGGCCAGCGACAGCGAAGATTCTATTGGCCTGC---CTGCTGGTGTGGCGGCGCAGGA---GCASizeHit CountTotal NormTotal
No Reads
droAna3
CAAGCAAAACACTAACTACACCTGTTAATCTTTTGAACATCGCAAATGTGGTAAGTAA--G---------GTC-T--GA--T-AACGA--GGCTAATTCTGACTCTC-----AA-TAC-------------GGACGGA--AAAGT-GCCGAAAAGTGGGGCAT--TCAT------TTTACACTAATTGGC-CGC-ATAA-A---ACTCCGAACCGAA-----CTGAA-------------------ACCT-------------------------------------------------------------------------------------------------AGACTCACAAA-----------------------------TTC------A--TACCCAAAACCACTGCCTCC-ATTAAACGTGCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGATTCCGTCGGAATGC---CAG---GGGACAC---ACTTGG---AAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATTCCGTCGGAATGC---CAG---GGT...................2411.001010000
droBip1
CAAGCAAAACACTAACTACACCTGTTAATCTTTTGAACATCGCAAATGTGGTAAGTAA--G---------GTC-T--G--CT-AACGA--GGCTAATTCTGACTCTC-----AA-TAC-------------GGACGGA--AAAGT-GCCGAAA-GTCGGGCAT--TCAT------AATACTCCCATTGGC-TGCCATAA-A---ACTCTGAACCGA-----------------------ACTG-AAAC-------TT----------------------------------------------------------------------------------------------TGACAATAAAA-AAAA--------------------TGC------A--TTTCCAAAACCACTGCCTCC-ATTAAACGTGCCCTTGAA---ATTCAGGCTAGCGACAGCGAAGACTCCGTCGGCCTGC---CTG---AGGACAC---ACTTGG---AAASizeHit CountTotal NormTotal
No Reads
dp5
CTAGCAAATCACTAACAACACCTGTTAATCCATTGAACATCGCGAATGTGGTAAGTAAAAG---------GCAA-A--GGCATGGCCA--GGTTATTATCGACTCTC-----AT-TACCACCCACTACCACCGACCAACAAAAGT-GTTAAAA-GTGCAACAC--ATAC-ATGCGCTACACCCAATTGGT-TGC-ACAC-A---------AACGATA-----CTGAA-----AACCGATACTG-AAAA--------------------------------------------------------------------------------------A-ACTG-ACTAAAAGACAGACAATT----------------------------TGCAAAGGCATGGAATGCTGGGAACACATGAA-ATTTAACATGAACTTGAA--CATTCAGGCCAGCGACAGCGAAGATTCCAATACTGGGG---AGG---AGGAGGCGGCGCACGC---AAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGCCAGCGACAGCGAA...............................................2011.0010000100000
droPer2
CTAGCAAATCACTAACAACACCTGTTAATCCATTGAACATCGCGAATGTGGTAAGTAAAAG---------GCAA-A--GGCATGGCCA--GGTTATTATCGACTCTC-----AT-TACCACCCACTACCACCGACCAACAAAAGT-GTTAAAA-GTGCAACAC--ATAC-ATGCGCTACACCCAATTGGT-TGC-ACAC-A---------AACGATA-----CTGAA-----AACCGATACTG-AAAA--------------------------------------------------------------------------------------A-ACTG-ACTAAAAGACAGACAATT----------------------------TGCAAAGGCATGGAATGCTGGGAACACATGAA-ATTTAACATGAACTTGAA--CATTCAGGCCAGCGACAGCGAAGATTCCAATACTGGGG---AGG---AGGAGGCGGCGCACGC---AAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CTAGCAAAACACTAACAACACCTGTTAATCTCATGAACCTGACAAATGTGGTAAGTAATAA---------ACAA-A--GGCC-AAAATACTGTAA--ACAAAATAGA-----AA------------------------------------------------------------------------------------------AACGAAGACAAAC-----ATAAAC-A-A------AACAA---AAAAA-TGCATCT--TG-T-----------------GCATTGAAATTGGTTGTTTGCTGCACACGTACAAAAAAAAAATATATATATG---------------ACAGACAAAAGATACTAT--------CTAAA---TCGC--AACTGGCAA------------GGTCGTTAG-CATTAACATGAACTTGAA---ATTCAGGCCAGCGACAGCGAAGATTCCCATGAGGAGCTCTCAG---GGAATGC---TCCTGC---CTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAG---GGAATGC---TCCTGC---CT.2112.00202000
............................................................................................................................................................................................................................................................................................ATTGAAATTGGTTGTTTGCTGCACAC.......................................................................................................................................................................................................2611.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACAGCGAAGATTCCC........................................1911.00100010
.....AAAACACTAACAACACCTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCGAAGATTCCCATGAGGAGC...............................2511.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCGAAGATTCCCATGA....................................2011.00100010
.................ACACCTGTTAATCTCATGAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
droVir3
CAAGCAAAACACTAACAACATCTGTTAATATCTTGAACATGTCGAACGTGGTAAGTAG--A---------GC-AG---TGTG-TCTCT--GGCTGCATTTGACTCAA-TTTTAA-CTT-------------GTG------CAAGT-GCCA--A-GTGCAACAT------------G-AAATTAAATTGGT-TGC-CCAA-A----------------------------------------------------------------------TG---CACACA----------------------------------------------------A----------------GCAATGTACACCAGACCAAAGGGTCTACG-------------------TAGTTAACAGAACGCCTTGC-AATTAACATGAACTTGAA---ATTCAGGCAAGCGACAGCGAAGATTCAATTGCCGCTC---CTG---AGGAGGC---AGCTCA---TGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................TAGTTAACAGAACGCCTTGC-A........................................................................................2113.003200000000000000000000000000000000000000000000000000000000100000
...........................ATATCTTGAACATGTCGAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000010000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TACG-------------------TAGTTAACAGAACGCCT.............................................................................................2112.002020000000000000000000000000000000000000000000000000000000000000
............................................................................................................TTTTAA-CTT-------------GTG------CAAGT-GCCA--.....................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000010100000000000000000000000000000000000000000
................................................................................TG-TCTCT--GGCTGCATTTGACT.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAAGATTCAATTGCCG..................................2011.001000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGCAAGCGACAGCGAAGAT............................................2211.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAATTGCCGCTC---CTG---......................2011.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAA---ATTCAGGCAAGCGACA....................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................TTAA-CTT-------------GTG------CAAGT-GCCA--A-G..................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................CTT-------------GTG------CAAGT-GCCA--A-GTGCAT.............................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATTGCCGCTC---CTG---AGGA..................2011.001000000000000000000000000000000000000100000000000000000000000000
................................................................................TG-TCTCT--GGCTGCATTTGACTC....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---ATTCAGGCAAGCGACAGCG.................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACGCCTTGC-AATTAACA.................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................CTCAA-TTTTAA-CTT-------------GTG------CAAG.............................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ACG-------------------TAGTTAACAGAACGCCTT............................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TT-------------GTG------CAAGT-GCCA--A-GTGCAA.............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGCGACAGCGAAGATTCAATT......................................2511.001000000000000000000000000000000000000100000000000000000000000000
..........................AATATCTTGAACATGTCGAACGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
...................ATCTGTTAATATCTTGAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGCCGCTC---CTG---AGGAGG................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAAGATTCAATTGCCGC.................................2111.001000000000000000100000000000000000000000000000000000000000000000
.....................................................................................TCT--GGCTGCATTTGACTCAA-A................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................ACACA----------------------------------------------------A----------------GCAATGTACACCAGAC..............................................................................................................................................2211.001000000000000000000000000000000000100000000000000000000000000000
..........................................................................G---TGTG-TCTCT--GGCTGCATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAACGCCTTGC-AATTAA...................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
....................................................AAGTAG--A---------GC-AG---TGTG-TCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGAACTTGAA---ATTCCC..............................................................20150.071001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAAGCAAATCACTAACAACACCTGTTAATCTCTTGAACATGTCGAATGTGGTAAGTAG--C---------GA-AGTG-TGTC-TGTGG---GCTGCACTTGACTCGT-TTTTAA-GTT-------------GTGCC------TGT-------------TGC---AAC-A--A---G-AATTTAAACTGGT-TGC-ACTT-G-------------------------------------A----------------------------------------------------------------------------------------------------------------GCACGGCACACCAGACCAAAGTGTCAGCG-------------------TACTAAATCAAACGCTTTGC-CATTAACTTGAATTCGAA---ATTCAGGCAAGCGACAGTGAAGATTCAAATGCTGCCC---CGG---TGGAGGC---CACACT---AGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..AGCAAATCACTAACAACACCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..................................................GTAAGTAG--C---------GA-AGTG-TGTC-TGTGG---..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
......................................................................GA-AGTG-TGTC-TGTGG---GCTGCACTT.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................................................................................................................................................................................................T-G-------------------------------------A----------------------------------------------------------------------------------------------------------------GCACGGCACACCAGACC.............................................................................................................................................2011.001001000
droGri2
CAAGCAAAACACTAACAACACCTGTTAATCAATTGAACATGTCGAACGTGGTAAGTAG--A---------GA-AG---TGCG-TCTCT--GGCTGCATTTGACTTGAATTTTGA-CTT-------------GT----G--CAAGT-GCCGA---GTGCAATTGCAACA---T---GAA-ACTCAATTGGT-TGC-CCAA-A----------------------------------------------------------------------TG---CACACA----------------------------------------------------A--------AACAAT--GCACAGCAGACCAAAT-----AGTCAGCGTAC----T---A---AACAGAA-----TGC--CCTGCCA-TTTACATATGAACTTGACCACACTCAGGCAAGCGACAGCGAAGATTCAATTGCCGCCA---ATG---AGGAGGCAACGCATG------CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:50 AM