ID:

dsi_5893

Coordinate:

3r:4162291-4162440 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-3.5	-3.4	-3.4

Flybase annnotation

CDS [3r_4162441_4162563_+]; exon [3r_4162441_4162563_+]; intron [3r_4152129_4162440_+]

Repeatable elements

Name	Class	Family	Strand
(CTA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TACAGTTTACTACTTACCTACTCTGCTCCCACTAAAAACCTTACTGCTTTCTACTACTAATACTGCTACTACTACCACCACCACTTCTATAACTACTACTACTACTATTTTTTCCTACTTCTATGTGTTCTGTGTTCAACGACCATCTAATTTGCGATTTGCATTAATTGAATTTTTATTTGTGCTTTTAAAATAATCATGTCCCCCAGACTTTTGCAAGGGCCGTGAGACTTTACAGAATCTCTGCGAC ************************************************..........................................................................(((.((.((.....)))).)))..............((((.(((.........))).))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	O002 Head	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries
..........................................................................................AACTACTACTACTACTATTT............................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0
.............................................................................................................TTTTCCTACTTCTATGTGTTC........................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................ACTACTCTTATTGTTTCCTACT...................................................................................................................................	22	3	2	0.50	1	0	0	1	0	0	0
............................................................................................................................................................................................................CTCAAATTTTTGCAAGGGC...........................	19	3	20	0.15	3	0	0	2	0	0	1
...............................................CTTCTACTACTAATGCTGC........................................................................................................................................................................................	19	2	8	0.13	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................AAGGGCAGTGAGATTTTAAA.............	20	3	10	0.10	1	0	0	0	0	1	0

Anti-sense strand reads

ATGTCAAATGATGAATGGATGAGACGAGGGTGATTTTTGGAATGACGAAAGATGATGATTATGACGATGATGATGGTGGTGGTGAAGATATTGATGATGATGATGATAAAAAAGGATGAAGATACACAAGACACAAGTTGCTGGTAGATTAAACGCTAAACGTAATTAACTTAAAAATAAACACGAAAATTTTATTAGTACAGGGGGTCTGAAAACGTTCCCGGCACTCTGAAATGTCTTAGAGACGCTG ************************************************..........................................................................(((.((.((.....)))).)))..............((((.(((.........))).))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M024 male body
.......................................................................................................................................AGTTGCTGGTAGATTAAACGCTA............................................................................................	23	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................TAGATTAAACGCTATACGCA......................................................................................	20	2	2	0.50	1	0	0	1	0	0
...............................................................ACGACGATGATGGTGG...........................................................................................................................................................................	16	1	8	0.25	2	0	2	0	0	0
....................................................................................................................................................................................................................AAAAGTTCCCGGCATTCT....................	18	2	4	0.25	1	0	0	0	1	0
............................................................................TGGTGGTGTAGAGATTGA............................................................................................................................................................	18	2	10	0.20	2	0	2	0	0	0
..........................................................................GGTGGTGGTGTAGAGATTG.............................................................................................................................................................	19	2	6	0.17	1	0	1	0	0	0
.................................................................GATGATGATGGTGGT..........................................................................................................................................................................	15	0	7	0.14	1	0	1	0	0	0
.............................................................TGACGATGATGGTGG..............................................................................................................................................................................	15	1	14	0.07	1	0	1	0	0	0
......................................................................................................................................AAGTTGCTGGAAGATGCAA.................................................................................................	19	3	18	0.06	1	0	1	0	0	0
.............................................................................GGTGGTGTAGAGATTGA............................................................................................................................................................	17	2	19	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................GGGCTGAAAAAGTTCCCGC..........................	19	3	20	0.05	1	0	0	0	0	1

Generated: 04/23/2015 at 09:20 PM