ID:

dsi_5878

 Coordinate:

3l:16200975-16201056 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_16201057_16201483_+]; CDS [3l_16200757_16200974_+]; exon [3l_16201057_16201784_+]; exon [3l_16201057_16201483_+]; CDS [3l_16200757_16200974_+]; CDS [3l_16201057_16201483_+]; exon [3l_16200757_16200974_+]; exon [3l_16200757_16200974_+]; intron [3l_16200975_16201056_+]; intron [3l_16200975_16201056_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------##################################################
TATTTTGCACTAGGCGAAATTGTCTTCCATTCCGAGGAAAAATCATTACAGTGGGTGTCCTGAAAGCGGGAACGAACTTTTCTGCCAGAATCTAGTTTTGATGTATGTTTATTTGTTTTTTTGCATCCATAGGTCTTATCCGACAATTTTGCAAGCCCTTTCCGAAGCAATTGTCAGGGAAT
**************************************************((((((((...(((((((((((((.((.((...((.((...)).))...)).)).)))))..))))))))..))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.....................................................................................................................................TCTTATCCGACAATTTTGCAAGCCCT....................... 26 0 1 1.00 1 1 0 0 0
..............................................................................................GTTTTGATGCATGTTTCTTT.................................................................... 20 2 1 1.00 1 0 1 0 0
.......CACTAGGCGAAATTGTCTTCCATTCCGA................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
..........................CCATTCCGAGGAAAAATCATTACAGTC................................................................................................................................. 27 1 1 1.00 1 0 0 1 0
............................................................................................................................................CGGCAATTTTGGAAGCCC........................ 18 2 5 0.20 1 0 1 0 0
....................................................................................................................TTTTTTGGATCGATAGGCC............................................... 19 3 14 0.07 1 0 0 0 1

Anti-sense strand reads

ATAAAACGTGATCCGCTTTAACAGAAGGTAAGGCTCCTTTTTAGTAATGTCACCCACAGGACTTTCGCCCTTGCTTGAAAAGACGGTCTTAGATCAAAACTACATACAAATAAACAAAAAAACGTAGGTATCCAGAATAGGCTGTTAAAACGTTCGGGAAAGGCTTCGTTAACAGTCCCTTA
**************************************************((((((((...(((((((((((((.((.((...((.((...)).))...)).)).)))))..))))))))..))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body
...................................................................................................................................................AAACGGTCAGGAAAGGTTTCG.............. 21 3 3 4.33 13 10 0 3 0 0 0
.........................................................................................................................................................TCGGGAAAGGCTTCGTTAACA........ 21 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................GAGTAGGCTGTTAAAAAGTT............................ 20 2 3 0.33 1 0 0 0 1 0 0
........................................................................................................TACAAGTAAACAAAAAAACCT......................................................... 21 2 3 0.33 1 0 0 0 0 1 0
.......................................................................................................................................AGTAGGCTGTTAAAAAGTT............................ 19 2 7 0.29 2 0 0 0 2 0 0
.........................................................................................................................................................TCGGGAAAGGCTTTGT............. 16 1 4 0.25 1 0 0 0 0 1 0
......................................................................................................................................GAGTAGGCTGTTAAA................................. 15 1 14 0.14 2 0 0 0 2 0 0
..................................................................GCCCTTGCTTGTACAGA................................................................................................... 17 2 7 0.14 1 0 0 0 0 1 0
.......................................................................................................................................AGTAGGCTGTTAAAAAGT............................. 18 2 15 0.13 2 0 0 0 2 0 0
...............................GGCTCCTCTTTAGGAAT...................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 1 0
.......................................................................................................................................AGTAGGCTGTTAAAAAGTTG........................... 20 3 14 0.07 1 0 0 0 1 0 0
................................................................................................................................................CTAAGACGTTCGGGCAAGG................... 19 3 18 0.06 1 0 0 0 0 0 1
....................................................................................................................................................GACGTAAGGGAAAGGCTTC............... 19 3 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 02:52 AM